NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MIS_1001013

Scaffold MIS_1001013


Overview

Basic Information
Taxon OID3300001765 Open in IMG/M
Scaffold IDMIS_1001013 Open in IMG/M
Source Dataset NameSinkhole freshwater microbial communities from Lake Huron, USA - combined 2007-2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91901
Total Scaffold Genes200 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (12.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Source Dataset Sampling Location
Location NameMiddle Island Sinkhole, Lake Huron Michigan, USA
CoordinatesLat. (o)45.19843Long. (o)-83.32721Alt. (m)Depth (m)23
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F092108Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
MIS_100101381F092108N/AMGILRISAKCSDLCWTEYTDAKGNKTESDGYVPEGIGISSDGDCGDYVSLDIDMQTGQIQNWKPVSDARVIKAQKSA*
MIS_10010139F011397N/AMKDFELLKRTYPVSHYERFCDGFDFIRKNSSEEERLEWGINLNDLQRVIKIGEKYIYQVAKEGKEFKTMCLCFKNYEIIRKNIFKLDDE*

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