NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12421J11937_10000109

Scaffold JGI12421J11937_10000109


Overview

Basic Information
Taxon OID3300000756 Open in IMG/M
Scaffold IDJGI12421J11937_10000109 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27541
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (92.16%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F019997Metagenome / Metatranscriptome226Y
F030064Metagenome186Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
JGI12421J11937_1000010936F019997AGGAGMDINTLKAAGATWLRASLAAVAALYMSGISDPKTLANAFVAGLLGPAAKFVNPKDPSYGFGSKK*
JGI12421J11937_1000010937F030064AGGAGVTNKFMTLGIVAGALISVGVLLSPIYKRVKRWAQWMERFMRDWEGEEEAPGRARVSGVMERLNNVDGELSQNGGFTTVKDRVDRLYENQVLIMDAFDELSERLINIENCLMNNQTEDEK*
JGI12421J11937_1000010941F016389N/AMPVIRKFAVQGHAIPSIVHEPRGPFPPEVLAEPEMTIDPSHSDSLHVGLDNIRFFKCRHCDAILVQEDLDDHICEE*
JGI12421J11937_1000010944F012098GAGGMPKVHNIGPKHFVQLIDLPVIWGKKFVVRGWTQEIEEPFRTSEPFLVRLPKYKALAFGKWTGFKTEEDALKSALNTREVTYDDFTEEAGWTAPDSDREASLKDINARLDSVDGAVHVHDWQTYYRMAEESQQKSS*
JGI12421J11937_1000010945F084140GGAGMYTIGKLITEWQKSHNKNLLDEVVLGTEVFNAIAKELKKRA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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