NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F106049

Metagenome / Metatranscriptome Family F106049

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F106049
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 51 residues
Representative Sequence MPPTVQVGAILMKEWPGMTQLLGLESEPCSGEWSLLKVLDGFALDRKIHAA
Number of Associated Samples 87
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 93.81 %
% of genes near scaffold ends (potentially truncated) 97.00 %
% of genes from short scaffolds (< 2000 bps) 91.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (93.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil
(13.000 % of family members)
Environment Ontology (ENVO) Unclassified
(28.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(63.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.99%    β-sheet: 18.99%    Coil/Unstructured: 62.03%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00027cNMP_binding 39.00
PF13545HTH_Crp_2 23.00
PF07589PEP-CTERM 8.00
PF11752DUF3309 1.00
PF03814KdpA 1.00
PF01569PAP2 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2060K+-transporting ATPase, KdpA subunitInorganic ion transport and metabolism [P] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.00 %
UnclassifiedrootN/A7.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001083|JGI12678J13193_1003821All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300001593|JGI12635J15846_10257349All Organisms → cellular organisms → Bacteria1116Open in IMG/M
3300002245|JGIcombinedJ26739_101391607All Organisms → cellular organisms → Bacteria → Acidobacteria594Open in IMG/M
3300003368|JGI26340J50214_10176094All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium531Open in IMG/M
3300004080|Ga0062385_11021454All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300004607|Ga0068948_1274900All Organisms → cellular organisms → Bacteria1340Open in IMG/M
3300005187|Ga0066675_10389736All Organisms → cellular organisms → Bacteria1027Open in IMG/M
3300005336|Ga0070680_101540493All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300005434|Ga0070709_10026861All Organisms → cellular organisms → Bacteria3416Open in IMG/M
3300005434|Ga0070709_10352364All Organisms → cellular organisms → Bacteria1088Open in IMG/M
3300005436|Ga0070713_102226104All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300005439|Ga0070711_100658978All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300005555|Ga0066692_10420487All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium849Open in IMG/M
3300005574|Ga0066694_10583587All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300005576|Ga0066708_10540627All Organisms → cellular organisms → Bacteria → Acidobacteria751Open in IMG/M
3300005586|Ga0066691_10433086All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium784Open in IMG/M
3300005591|Ga0070761_10478561All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300005602|Ga0070762_10020918All Organisms → cellular organisms → Bacteria3415Open in IMG/M
3300006050|Ga0075028_100208212All Organisms → cellular organisms → Bacteria1059Open in IMG/M
3300009137|Ga0066709_100365682All Organisms → cellular organisms → Bacteria1988Open in IMG/M
3300009522|Ga0116218_1036000All Organisms → cellular organisms → Bacteria → Acidobacteria2230Open in IMG/M
3300009524|Ga0116225_1260369All Organisms → cellular organisms → Bacteria777Open in IMG/M
3300009643|Ga0116110_1284077All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium527Open in IMG/M
3300009672|Ga0116215_1308833All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300009672|Ga0116215_1358168All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300009683|Ga0116224_10252726All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300009683|Ga0116224_10459860All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300009698|Ga0116216_10991315All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium502Open in IMG/M
3300010401|Ga0134121_12387473All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300011075|Ga0138555_1068237All Organisms → cellular organisms → Bacteria1372Open in IMG/M
3300011120|Ga0150983_10947871All Organisms → cellular organisms → Bacteria902Open in IMG/M
3300012532|Ga0137373_11196920All Organisms → cellular organisms → Bacteria → Acidobacteria537Open in IMG/M
3300012958|Ga0164299_11205328Not Available573Open in IMG/M
3300012984|Ga0164309_10846291Not Available741Open in IMG/M
3300014169|Ga0181531_10196079All Organisms → cellular organisms → Bacteria1226Open in IMG/M
3300014654|Ga0181525_10861358All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300014657|Ga0181522_10875438All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300017924|Ga0187820_1142703All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300017943|Ga0187819_10816761All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300017955|Ga0187817_10490312All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300018002|Ga0187868_1282529All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium552Open in IMG/M
3300018006|Ga0187804_10488827All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300018007|Ga0187805_10577877All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300018017|Ga0187872_10344481All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300018018|Ga0187886_1339464All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300018043|Ga0187887_10434508All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300018043|Ga0187887_10681789All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300018044|Ga0187890_10692844All Organisms → cellular organisms → Bacteria → Acidobacteria575Open in IMG/M
3300018433|Ga0066667_10226339All Organisms → cellular organisms → Bacteria1397Open in IMG/M
3300019879|Ga0193723_1162186All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300021181|Ga0210388_11807914All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300021404|Ga0210389_11030888All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300021405|Ga0210387_10792385All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium837Open in IMG/M
3300021407|Ga0210383_10588776All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium959Open in IMG/M
3300021407|Ga0210383_11366750All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300021433|Ga0210391_10350005All Organisms → cellular organisms → Bacteria1159Open in IMG/M
3300021433|Ga0210391_10402103All Organisms → cellular organisms → Bacteria1075Open in IMG/M
3300021475|Ga0210392_11440316All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300022510|Ga0242652_1013825All Organisms → cellular organisms → Bacteria802Open in IMG/M
3300024323|Ga0247666_1028393All Organisms → cellular organisms → Bacteria1176Open in IMG/M
3300025414|Ga0208935_1060591All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium509Open in IMG/M
3300025434|Ga0208690_1002533All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5050Open in IMG/M
3300025457|Ga0208850_1052108All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium677Open in IMG/M
3300027505|Ga0209218_1017871All Organisms → cellular organisms → Bacteria1303Open in IMG/M
3300027545|Ga0209008_1144079All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300027565|Ga0209219_1113643All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300027591|Ga0209733_1151087All Organisms → cellular organisms → Bacteria → Acidobacteria564Open in IMG/M
3300027648|Ga0209420_1064662All Organisms → cellular organisms → Bacteria1075Open in IMG/M
3300027681|Ga0208991_1228118All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium533Open in IMG/M
3300027768|Ga0209772_10057018All Organisms → cellular organisms → Bacteria1169Open in IMG/M
3300027821|Ga0209811_10140398All Organisms → cellular organisms → Bacteria891Open in IMG/M
3300027855|Ga0209693_10111949All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1351Open in IMG/M
3300027855|Ga0209693_10241740Not Available885Open in IMG/M
3300027855|Ga0209693_10309905All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300027855|Ga0209693_10638010All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium500Open in IMG/M
3300027879|Ga0209169_10079594All Organisms → cellular organisms → Bacteria1692Open in IMG/M
3300027889|Ga0209380_10113146All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1575Open in IMG/M
3300027889|Ga0209380_10488195All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300027895|Ga0209624_10054679All Organisms → cellular organisms → Bacteria2559Open in IMG/M
3300027895|Ga0209624_10654231All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300027905|Ga0209415_10038440All Organisms → cellular organisms → Bacteria6565Open in IMG/M
3300027986|Ga0209168_10202056All Organisms → cellular organisms → Bacteria994Open in IMG/M
3300028047|Ga0209526_10764355All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium602Open in IMG/M
3300028718|Ga0307307_10239072All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium579Open in IMG/M
3300028800|Ga0265338_10243803All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1329Open in IMG/M
3300030053|Ga0302177_10151887All Organisms → cellular organisms → Bacteria1304Open in IMG/M
3300030707|Ga0310038_10406313All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300030884|Ga0265758_103071All Organisms → cellular organisms → Bacteria → Acidobacteria742Open in IMG/M
3300031231|Ga0170824_102732798All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300031241|Ga0265325_10406878All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300031525|Ga0302326_10961520All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1205Open in IMG/M
3300031708|Ga0310686_103984177All Organisms → cellular organisms → Bacteria825Open in IMG/M
3300031708|Ga0310686_110474331All Organisms → cellular organisms → Bacteria1125Open in IMG/M
3300031715|Ga0307476_10560511All Organisms → cellular organisms → Bacteria847Open in IMG/M
3300031902|Ga0302322_103931529Not Available507Open in IMG/M
3300031962|Ga0307479_11439856All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300034125|Ga0370484_0225410All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium516Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil13.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil11.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil9.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog3.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland3.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere2.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.00%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.00%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001083Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003368Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004607Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009643Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40EnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011075Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018002Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018018Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019879Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2EnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300022510Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024323Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07EnvironmentalOpen in IMG/M
3300025414Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025434Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025457Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300027505Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027648Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300030884Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031241Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaGHost-AssociatedOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300034125Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12678J13193_100382123300001083Forest SoilMLSTVEVGTILMKEWPGMTQLLGLESEPCSGEWGRLKVLDGFALDRKIHAAGW
JGI12635J15846_1025734923300001593Forest SoilMPATVQVGSILMKKWPVTMQSLGLESEPCSGSWSLVKVLDGFILDRRIHAAGWNFF
JGIcombinedJ26739_10139160723300002245Forest SoilMTVQVGTILMKEWPGKPQLLGLESEPCSGEWRQLKLLDGFAVDRKIHAAGWNFFFMATQF
JGI26340J50214_1017609413300003368Bog Forest SoilMPPTVQVGTILMKEWPEMTRLLGLETGPCSGEWSLLKVLDGFALDRKIHAAGW
Ga0062385_1102145413300004080Bog Forest SoilMPLPVQVGTILVKEWPGMHQLFGIESEPCSGEWGMVKAADDLTLDRKVHAA
Ga0068948_127490013300004607Peatlands SoilMIQVGAILMKEWPGITQLLGLESEPCSGEWSLLQVLDSFAFDRKIHAAGWNFFFM
Ga0066675_1038973613300005187SoilMPPTVEVGAILMKDWSRMKKLLGLESEAYSGEWSVLKALDVCALDRKIHAAGWNFFFMAT
Ga0070680_10154049313300005336Corn RhizosphereMPQTVQVGAILMKDWPGIKKLIGLESEPYSGQWTLLKVLDVAALDRKIHAAGWNFFFM
Ga0070709_1002686153300005434Corn, Switchgrass And Miscanthus RhizosphereMTQAVQVGTILMKEWPEMTQRLNLESEPCSGEWSLLKVLDGFA
Ga0070709_1035236423300005434Corn, Switchgrass And Miscanthus RhizosphereMPQSVEVGTILVKGWLGMPHLPGFETEPCFGDWSIVKVTDAFALDRTIHAAGWNFFFMAT
Ga0070713_10222610413300005436Corn, Switchgrass And Miscanthus RhizosphereMPQSVEVGTILVKGWLGMPHLPGFETEPCFGDWSIVKVTDAFALDRTIHAAGWNF
Ga0070711_10065897823300005439Corn, Switchgrass And Miscanthus RhizosphereLHLEIDRAMPSTIQVGTILMKECPGMPELLGLETEPCFEDGSWVTVLDGVALDRKIHVAG
Ga0066692_1042048733300005555SoilMPPTVQVGTILMKEWPRMTELLGLENEPYAGNWSTVTALDGFALERKIH
Ga0066670_1099072213300005560SoilMPPAVQVGAILVQEWPMTTQLLKPESEPYSGTWRLIKALDGLALDRKIHAA
Ga0066694_1058358713300005574SoilMPPTVEVGAILMKDWSRMKKLLGLESEAYSGEWTVLKALDVCALDRKIHAAGW
Ga0066708_1054062713300005576SoilMPPAVQVGAILVQEWPMTTQLLKPESEPYSGTWRLIKALDGLALDRKIHAAGWN
Ga0066691_1043308613300005586SoilMPPTFRVGTILMNEWPGMTQSLGLKSEPCSGTWSSIKVLDGYALERKIHAAGWNFFFMAA
Ga0070761_1047856113300005591SoilMSTAVQVGTILMKQWSGMAQLSQLESEPCLGNWSQVK
Ga0070762_1002091853300005602SoilMPSKVQVGSILMKEWPGKPQLLGLESEPCSGEWSL
Ga0075028_10020821213300006050WatershedsMSSTVQVGSILVKEWPPMAHLLGLESEPCSGEWGLLKVLDTPD
Ga0066709_10036568233300009137Grasslands SoilMTPTIQVGTILMKEWPGMPQPLGLDSEPCSGAWSLVKSLDSF
Ga0116218_103600013300009522Peatlands SoilMPPTVQVGTILMKEWPGMTQLVNLESEPCSGEWSLLKLLDGVALDRK
Ga0116225_126036923300009524Peatlands SoilMPPTVQVGAILMKEWPGMTQLLGLESEPCSGEWSLLKVLDGFALDRKIHAA
Ga0116110_128407713300009643PeatlandMPTTVQVGTILMTEWPGITQSLGLESEPCSGNWSMIKALDSFA
Ga0116215_130883313300009672Peatlands SoilMPPTVQVGTILMKEWPGMNHLLGTESEPCSGEWSLLKVLDGFALDRKIHAAGWNFFFM
Ga0116215_135816813300009672Peatlands SoilMPSTVQVGTILMKEWPGMKQLLGLESEPCSEEWSLLKVLDGFSLDRKIHT
Ga0116224_1025272613300009683Peatlands SoilMPPTVQVGTILMKEWPGMNHLLGTESEPCSGEWSLLKVLDGFALDRKIHAAGWNFF
Ga0116224_1045986023300009683Peatlands SoilMPPTVQLGAILMKEWPGMTQLLGLESEPCSGEWSLLKVLDGFALD
Ga0116216_1099131513300009698Peatlands SoilMPSTVQVGTILMKEWPGMKQLLGLESEPCSGEWSLLKVLDGFSLDRKIHTAGWNFF
Ga0134121_1238747313300010401Terrestrial SoilMAETIQVGTILMKEWPGMTQLLNLESEPCSGEWSLLKVLDGFA
Ga0138555_106823723300011075Peatlands SoilMIQVGAILMKEWPGITQLLGLESEPCSGEWSLLQVLDSFAFDRKIHAAGWNFFFMATE
Ga0150983_1094787113300011120Forest SoilMTVQVGTILMKEWPGKPQLLGLESEPCSGEWRQLKLLDG
Ga0137373_1119692023300012532Vadose Zone SoilMLPAVQVGAILIKEWPLMTQRSGLESEPYSGNLSLVKVLDGCALDRKIRASGWNFLFHGSRSKSDVLWCRWSE
Ga0164299_1120532813300012958SoilMPSTVQVGTILMKEWPGMQQLLGLEIEPCLGDWSLVKVLDGLAVDRKVHAAGWNFFFMA
Ga0164309_1084629113300012984SoilMPSTVQVGTILMKEWPGMQQLLGLEIEPCLGDWSLVKVLDGLAVDRKVHAAGWNFFFM
Ga0181531_1019607913300014169BogMSSPVEVGTILMKDWPGMTQPFRLESEPCSGNWSLVQTLDGDTLDRKIHAAGWNFF
Ga0181525_1086135823300014654BogMPTTVHVGTVLMKEWAGMPQHFGLEIEPCSGDWSSIKALDGFALDRKIHAAGWNFFFMA
Ga0181522_1087543813300014657BogMSATLQVGAILMKEWPRMTQLLNLETEPCSGEWRLLKVLNGYAVDRKIHAAG
Ga0187820_114270313300017924Freshwater SedimentMPPTVQVGTILMKEWPGMSQLLGLESEPCSGEWSLLNVLD
Ga0187819_1074868413300017943Freshwater SedimentMKEWPGMPQLVGFEVESGWGEWSMVKVPDAFTFDRKIHAAGWNFFFM
Ga0187819_1081676113300017943Freshwater SedimentMPSTVQVGTILMKEWPGMTQVHGLESEPCSGEWSLLKVLDSFALDRKIHA
Ga0187817_1049031223300017955Freshwater SedimentMPPTVQVGSILIEDQSQVAQVLGLESEPCSGNWSLLKVLDGFALDRK
Ga0187816_1051974423300017995Freshwater SedimentMKEWPGMPQLVGFEVESGWGEWSMVKVPDAFTFDRKIHAAGWNFFFMAAEVK
Ga0187868_128252913300018002PeatlandMPTTVQVGTILMTEWPGITQSLGLESEPCSGNWSMIKALDSFALD
Ga0187804_1048882723300018006Freshwater SedimentMRSTIQVGTILMKEWPGMPQVFGFETEPGLGEWSVVKVPDAFTLDRKIHAAGWNFFFM
Ga0187805_1057787723300018007Freshwater SedimentMPSTVQVGTILMKEWPGMTQLLGLESEPCSGEWSLLNVLD
Ga0187872_1034448113300018017PeatlandMKEWPGITQPLGLESEPCSGEWSLLKILDGFTLDRKIHAAGWSFFFMAAEVK
Ga0187886_133946423300018018PeatlandMPPTVQVGTILMKDWPGMTQLLGLESEPCSGEWSLLKVLDGFTLDRKIHATGWNFFFMA
Ga0187887_1043450823300018043PeatlandMPPTIQVGAILMNNWPGVTPPLNLETEPCSGGWSLLKVLDGFALDR
Ga0187887_1068178913300018043PeatlandMPPTVQVGTILMKEWPGMTQLLGLESEPCSGEWSRLKVLDG
Ga0187890_1069284413300018044PeatlandMPPAIQVGSILIGKLPTIAQVLGLESEPYCGSWSLVKVPDGFAIDRKIHAAGWNFFFMA
Ga0066667_1022633933300018433Grasslands SoilMPPTVEVGAILMKDWSRMKKLLGLESEAYSGEWSVLKALDVCALDRKIHAAGWNFFFMATEVKV
Ga0193723_116218633300019879SoilMPSTVQVGTILMKKWPMMTELLGLESEPCSGNWSQLKALDGFGFDR
Ga0210388_1180791423300021181SoilMAESVQVGTILMKEWPGMAQLLQLESEPCSGNWSLIKTLDGVS
Ga0210389_1103088813300021404SoilMSAATVQVGTILMKEWPGMAQLLELESEPCSGSWSVIKTLDGVSLDRKILAAGWNFFF
Ga0210387_1079238523300021405SoilMPTTVKVGSILMKEWPGMTQLLEIESEPCSGEWNLLKVQDVP
Ga0210383_1058877613300021407SoilMPPTIEVGAILMKDWPAMTQPLNLESEPCSGQWSLLKVLDGS
Ga0210383_1136675013300021407SoilMPSPVQVGTILMKEWPGMNQLLGIESEPCSGEWNMVKALDS
Ga0210391_1035000513300021433SoilMTVQVGTILMKEWPGKPQLLGLESEPCSGEWRQLKLLDGFAVDRKIHAAGWNFFFMATQFKATFF
Ga0210391_1040210313300021433SoilMPSNVQVGSILMKEWPGKPQLLGLESEPCSGEWSVLKIIDGFT
Ga0210392_1144031623300021475SoilMPPIVQVGTILMKEWPGMTQLLGLESEPCSGEWSLLKVLDGFTLDRKI
Ga0242652_101382513300022510SoilMPATVQVGTILMKEWPGMTQLLGLESEPCSGEWSLLKLLDGVALDRKIHAA
Ga0247666_102839323300024323SoilLHLEIDRAMPSTIQVGTILMKECPGMPELLGLETEPCFEDGSWVTVLDGVALDR
Ga0208935_106059113300025414PeatlandMPPTVQVGTILMKDWPGMTQLLGLESEPCSGEWSLLKVLDGFTLDRKIHATGWNFFF
Ga0208690_100253313300025434PeatlandMPPTVQVGTILMKDWPGMTQLLGLESEPCSGEWSLLKVLDGFTLDRKIHATGWN
Ga0208850_105210813300025457Arctic Peat SoilMPPTIQVGTILMKDWPGMTQPLGLESEPCSGSWSVLKVLDSFALDRKIHAAGWNF
Ga0209218_101787113300027505Forest SoilMTVQVGTILMKEWPGMTQLLEIESEPCSGEWNLLKVQDVPALDRKIHAAGWNLFFMAGEV
Ga0209008_114407923300027545Forest SoilMPATVQVGSILMKKWPVTMQSLGLESEPCSGSWSLVKVLDGFVLDRKIHAA
Ga0209219_111364313300027565Forest SoilMLSTVEVGTILMKEWPGMTQLLGLESEPCSGEWGRLKVLDGFALDRKIRAAGWNF
Ga0209733_115108713300027591Forest SoilMLSTVEVGTILMKEWPGMTRLLGLESEPCSGEWSRLKVLDGFALDRKIHAAGWNFFFMATEVK
Ga0209420_106466233300027648Forest SoilMSATVQVGTILLQEWPGMAQHFQLESEPCSGTWSLVKTLDGV
Ga0208991_122811813300027681Forest SoilMPPTVQVGTILMKEWPRMTELLGLENEPYSGNWSTVTVLDGFALDRKIHAVGWN
Ga0209772_1005701813300027768Bog Forest SoilMSTVQVGAILMKDWPGVTQFLQLKSEPYSGSWSQVKTLDGVSLDRKIHAAGWNFFFMAA
Ga0209811_1014039823300027821Surface SoilLHLEIDRAMPSTIQVGTILMKECPGMPELLGLETEPCFEDGSWVTVLDG
Ga0209693_1011194913300027855SoilMPPTVQVGAILMKDWPAMNQVLGIESEPCSGEWSLLKALDGFTLDRKIHAAGWNFFYM
Ga0209693_1024174013300027855SoilMPSKVQVGSILMKEWPGKPQLLGLESEPCSGEWSLLKIMDGFT
Ga0209693_1030990523300027855SoilMTVQVGTILMKEWPGKPQLLGLESEPCSGEWRQLKLLDGFA
Ga0209693_1063801013300027855SoilMPTTVKVGSILMKEWPGMTQLLEIESEPCSGEWNLLKVQDVPAL
Ga0209169_1007959443300027879SoilMPPTVQVGAILMKDWPAMNQVLGIESEPCSGNGAC
Ga0209380_1011314633300027889SoilMPPTLQVGSILMKDWPMKDWQGMKQLPGIESEPCSGEWSLLKALDGFALDRQIHAAGWNFFFMAA
Ga0209380_1048819523300027889SoilMSSTFQVGTILMKEWPGMAQLFQLETEPCLENWSLIKTLDGISLD
Ga0209624_1005467943300027895Forest SoilMTVQVGTILMKEWPGKPQLLGLESEPCSGEWRQLKLLDGFAVDRKIHAAGWNFFFMATQFKA
Ga0209624_1065423113300027895Forest SoilMPATVQVGSILMKKWPVTMQSLGLESEPCSGSWSLVRVLDGFVLDRKIHAAGWNF
Ga0209415_1003844013300027905Peatlands SoilMTTAVQVGTILMKEWPGMNQLLGTESEPCSADWSLLKALDGFAFDRKIHAAGWNFFFMAD
Ga0209168_1020205613300027986Surface SoilMPATIQAGAILMKDWPGMTQPLNLETEPCTGEWSL
Ga0209526_1076435513300028047Forest SoilMPPTVQVGTILMKEWPRMTELLGLENEPYSGNWSTVTVLDGF
Ga0307307_1023907213300028718SoilMPPTIQVGTILMKDWPLMTQLLGLESESCSGNWSLVKALDGFALDRKIHAAGWNFFIHGG
Ga0265338_1024380333300028800RhizosphereMPPTIQVGTILMKDWPGMTQPLGLESEPCSGSWSVLKVLDSFALDR
Ga0302177_1015188713300030053PalsaMPSKVQVGSILMKEWPGKPQLLGLESEPCSGEWSLLKIVDGSTLDRKIHAAGWNFFFMAP
Ga0310038_1040631323300030707Peatlands SoilMPSTVQVGTILMKEWPGMKQLLGLESEPCSGEWSLLKVLDGFSLDRKIHT
Ga0265758_10307113300030884SoilMTVQVGTILMKDWPGKPQLLELESEPCSGQWRLLKVIDSFALDRKIHAAG
Ga0170824_10273279813300031231Forest SoilMPPTIQVGTILMNDWSGTTQPLNLESEPCSGNWSVLKVLDSFALDRKIHAAGWNF
Ga0265325_1040687813300031241RhizosphereMKDWPGKPQLLGLDIEPWFAGWSLLKVLDAFALDDKIHAAGWNFFFMANETK
Ga0302326_1096152033300031525PalsaMAATVQVGSILMKDWPGMKTLPGIESEPCSGEWSLLKAQD
Ga0310686_10398417713300031708SoilMPPTVQVGTILMKEWPGMNQLLGLESEPCSGEWSLLKVLDGFTLDRKVHAAGWNFF
Ga0310686_11047433143300031708SoilMPQEVQVGTILMKEWPLTTQFFGLESEPCSGNWSLVKGLDGFVLVRKIQAA
Ga0307476_1056051123300031715Hardwood Forest SoilMAQTVQAGTILIREWPGMTKLLGLESEPCSAGWSQLKALDSFALDR
Ga0302322_10393152913300031902FenMPQNIEVGTILMKMKDWVGMPQLPGLETEPCFGEWSVVKVTDAFALDREVHAAGW
Ga0307479_1143985613300031962Hardwood Forest SoilMAQNVKVGTILMKEWPGMPQLIGFETEPCFGQWSTVKALDPFALDRKIHAAGWNLFFMAT
Ga0370484_0225410_2_1603300034125Untreated Peat SoilMPPTIQVGTILMKDWPGMTQPLGLESEPCSGSWSVLKVLDSFALDRKIHAAGW


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