| Basic Information | |
|---|---|
| Family ID | F105807 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 100 |
| Average Sequence Length | 47 residues |
| Representative Sequence | ARAAGITQITALASSDNPAALALLRRTANVTDVRFEGPELSIRAAIA |
| Number of Associated Samples | 93 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 1.00 % |
| % of genes from short scaffolds (< 2000 bps) | 1.00 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.70 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (99.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (30.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (47.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 13.33% β-sheet: 29.33% Coil/Unstructured: 57.33% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.70 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF00202 | Aminotran_3 | 69.00 |
| PF00027 | cNMP_binding | 3.00 |
| PF00682 | HMGL-like | 2.00 |
| PF05402 | PqqD | 1.00 |
| PF06224 | HTH_42 | 1.00 |
| PF02417 | Chromate_transp | 1.00 |
| PF09836 | DUF2063 | 1.00 |
| PF13378 | MR_MLE_C | 1.00 |
| PF00211 | Guanylate_cyc | 1.00 |
| PF02423 | OCD_Mu_crystall | 1.00 |
| PF00890 | FAD_binding_2 | 1.00 |
| PF03992 | ABM | 1.00 |
| PF13439 | Glyco_transf_4 | 1.00 |
| PF13411 | MerR_1 | 1.00 |
| PF00528 | BPD_transp_1 | 1.00 |
| PF00753 | Lactamase_B | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG2059 | Chromate transport protein ChrA | Inorganic ion transport and metabolism [P] | 1.00 |
| COG2114 | Adenylate cyclase, class 3 | Signal transduction mechanisms [T] | 1.00 |
| COG2423 | Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family | Amino acid transport and metabolism [E] | 1.00 |
| COG3214 | DNA glycosylase YcaQ, repair of DNA interstrand crosslinks | Replication, recombination and repair [L] | 1.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 99.00 % |
| All Organisms | root | All Organisms | 1.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300032828|Ga0335080_10249267 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1940 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 12.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 10.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 7.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 7.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 5.00% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.00% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 4.00% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 3.00% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 3.00% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 3.00% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.00% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 2.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 2.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 2.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 2.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 2.00% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 1.00% |
| Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 1.00% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 1.00% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 1.00% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.00% |
| Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 1.00% |
| Sandy Soil | Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 1.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.00% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 1.00% |
| Soil | Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil | 1.00% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2228664022 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300004153 | Grasslands soil microbial communities from Hopland, California, USA (version 2) | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300004643 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Environmental | Open in IMG/M |
| 3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
| 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Environmental | Open in IMG/M |
| 3300005556 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 | Environmental | Open in IMG/M |
| 3300005560 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119 | Environmental | Open in IMG/M |
| 3300005561 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 | Environmental | Open in IMG/M |
| 3300005566 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 | Environmental | Open in IMG/M |
| 3300005568 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 | Environmental | Open in IMG/M |
| 3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
| 3300005576 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006172 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 | Environmental | Open in IMG/M |
| 3300006354 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 | Environmental | Open in IMG/M |
| 3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300006914 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
| 3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300010039 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56 | Environmental | Open in IMG/M |
| 3300010229 | Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1 | Engineered | Open in IMG/M |
| 3300010301 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015 | Environmental | Open in IMG/M |
| 3300010321 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010877 | Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011269 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG | Environmental | Open in IMG/M |
| 3300012010 | Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M | Environmental | Open in IMG/M |
| 3300012011 | Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012353 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012931 | Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300012972 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
| 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Host-Associated | Open in IMG/M |
| 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014058 | Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M | Environmental | Open in IMG/M |
| 3300015197 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary) | Environmental | Open in IMG/M |
| 3300015356 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300017944 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG | Environmental | Open in IMG/M |
| 3300017966 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG | Environmental | Open in IMG/M |
| 3300018089 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
| 3300019888 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2 | Environmental | Open in IMG/M |
| 3300020078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300024254 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02 | Environmental | Open in IMG/M |
| 3300024286 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28 | Environmental | Open in IMG/M |
| 3300025893 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026550 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes) | Environmental | Open in IMG/M |
| 3300027903 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028654 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG | Host-Associated | Open in IMG/M |
| 3300028802 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S | Environmental | Open in IMG/M |
| 3300031197 (restricted) | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1 | Environmental | Open in IMG/M |
| 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Host-Associated | Open in IMG/M |
| 3300031672 | Soil microbial communities from Risofladan, Vaasa, Finland - OX-2 | Environmental | Open in IMG/M |
| 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Host-Associated | Open in IMG/M |
| 3300032008 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 | Environmental | Open in IMG/M |
| 3300032052 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033233 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom | Environmental | Open in IMG/M |
| 3300033805 | Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| INPgaii200_11367772 | 2228664022 | Soil | GITEITALASSDNRAAVALIQRIASVRDVTLEGPELSIRAAIA |
| Ga0063455_1014932952 | 3300004153 | Soil | DARLAGITEITALTSPDNPAAIALVRRIAKVVDVCFEGPELSIRAAIA* |
| Ga0062595_1010596082 | 3300004479 | Soil | CDARAAGIAEITALASSDNPAALALLRRTAKVLDVSLEGPELSIRAAIA* |
| Ga0062591_1016424733 | 3300004643 | Soil | GITEITALVSSDNPSAVAVLRRIAGALDVRFEGRELSIRAAIA* |
| Ga0066388_1078838772 | 3300005332 | Tropical Forest Soil | ITEITAQASGENRAALALIRRSARVLDIRLEGPEQTIRAAIA* |
| Ga0070660_1008184292 | 3300005339 | Corn Rhizosphere | AGITEITALAASDNRAAVALLRRISHVLDVRLEGPELSIRAAIA* |
| Ga0070709_107205301 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | ALASELLVDARAAGITQITALASSDNPAALALLRRTTNVTDIRLEGPELSIRAAIA* |
| Ga0070681_106249502 | 3300005458 | Corn Rhizosphere | RAAGITQVTALASSDNPAALALLRRTTNVTDIRLEGPELSIRAAIA* |
| Ga0070731_107910832 | 3300005538 | Surface Soil | GITEITAQAATDNRAALALIRRTACITDIRLDGPEQSIRAAIA* |
| Ga0070704_1007516652 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | GELVAEARAEGVKEITALVSADNPAAVSLLRRIANVLSVRFEGSDLSIRAAIA* |
| Ga0066707_109070562 | 3300005556 | Soil | ARAAGITQITALASSDNPAALALLRRTANVTDVRFEGPELSIRAAIA* |
| Ga0066670_108539791 | 3300005560 | Soil | MLLDDARAAGITEISALASGDNRAALALIRRSASVLEVRLEGPEQAIRAAIA* |
| Ga0066699_110381792 | 3300005561 | Soil | MLLDDARAAGITEISALASGDNRAALALIRRSACILEVRLEGPEQSIRAAIA* |
| Ga0066693_101013411 | 3300005566 | Soil | LAAELLADARAAGITQITALAASDNPAALALLRRTANVTDVRFEGPELSIRAAIA* |
| Ga0066703_102549641 | 3300005568 | Soil | TALAASDNPAALALLLRTANVTDVRFEGAELSIRAAIA* |
| Ga0066705_109765551 | 3300005569 | Soil | ASGDNRAALALIRRSACILEVRLEGPEQAIRAAIA* |
| Ga0066708_104885262 | 3300005576 | Soil | MLLDDARAAGITEISALASGDNRAALALIRRSACILEVRLEGPEQAIRAAIA* |
| Ga0066903_1015628252 | 3300005764 | Tropical Forest Soil | TALVSADNPVAVALLRRIASVLDIRHSGPELSIRAAIA* |
| Ga0070717_107302462 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | HELIADARAAGVTEITALVSGDNRAAVALLRRVAGALEIRFEGPALSIRARLPEAA* |
| Ga0075018_104450452 | 3300006172 | Watersheds | TEITALASSDNPATLALLRRTSDVVDVHFEGPELSIRAAIA* |
| Ga0075021_102359121 | 3300006354 | Watersheds | VDARAAGVTEITALVSSDNPAAVAVLRRIVNALAVSFEGPELWIRAAIA* |
| Ga0079222_101007261 | 3300006755 | Agricultural Soil | VTALASSDNPAALRLLRRTANVLDVHLEGPELSIRAAIA* |
| Ga0066659_102178762 | 3300006797 | Soil | ALASSDNPAALALLRRTANVVDVRLEGPELSIRAAIA* |
| Ga0075436_1015556451 | 3300006914 | Populus Rhizosphere | ITEISALASGDNRAALALIRRSACVLEVRLEGPEQAIRAAIA* |
| Ga0079219_112680931 | 3300006954 | Agricultural Soil | RMLLDDARAAGITEITAQASGENRAALALIRRSARVLEISLDGPEQSIRAAIA* |
| Ga0066710_1046874851 | 3300009012 | Grasslands Soil | ITALTGSDNRATLALLRGIARVLDVRLEGTETSIRAAIA |
| Ga0099829_104197791 | 3300009038 | Vadose Zone Soil | VASDNPAALALLRRIVNVFDISLDGPEVSIRAAIA* |
| Ga0099828_110743861 | 3300009089 | Vadose Zone Soil | ELLADARAAGIAEITALAGSDNPAALALIRRTANVIDVHFEGPELSIRAAIA* |
| Ga0105242_103950443 | 3300009176 | Miscanthus Rhizosphere | RAAGITEITALVASDNPAALALLRRILTVLDVRFDGPELWIRAALR* |
| Ga0126374_117015041 | 3300009792 | Tropical Forest Soil | ITALVSADNPVAVALLRRIASVLDIRHSGPELSIRAAIA* |
| Ga0126309_113057322 | 3300010039 | Serpentine Soil | AGELVADARAGGITEITALVSSDNPPAVRVLRRIAGALDIRSEGPDLSIRVSLA* |
| Ga0136218_10072124 | 3300010229 | Soil | XALVSSDNPAAVALLRRVLSRLDIRHEGPELTIRARAEPRF* |
| Ga0134070_104252461 | 3300010301 | Grasslands Soil | ALASSDNPAALALLRRTAKVVDVRLEGPELSIRAAIA* |
| Ga0134067_103947781 | 3300010321 | Grasslands Soil | QHRGIGSALTGMLLDDARAAVITEISALASGDNRAALALIRRSAFILEVRLEGPEQAIRAAIA* |
| Ga0134067_104049641 | 3300010321 | Grasslands Soil | TALASSDNPAALALLRRTANVVDVRFEGPELSIRAAIA* |
| Ga0126376_114360341 | 3300010359 | Tropical Forest Soil | LADARAAGIRQVTALASSDNRAALALLRRTARVLDIRFEGAELSVRAAIA* |
| Ga0134125_115829082 | 3300010371 | Terrestrial Soil | LVAGDNSAAVTLLRRVARRLQITYEGTELSIRAAI* |
| Ga0105239_134792201 | 3300010375 | Corn Rhizosphere | TALASSDNPAAVALLRRTAKVLDVRLEGPELSIRAAIA* |
| Ga0134126_107262441 | 3300010396 | Terrestrial Soil | TALASSDNPAALALLRRTTNVTDIRLEGPELSIRAAIA* |
| Ga0126356_111902802 | 3300010877 | Boreal Forest Soil | LASGDNPAALALIRRTACILEVRLEGPEQAIRAAIA* |
| Ga0137392_115802342 | 3300011269 | Vadose Zone Soil | ASNDNPAVLALLRRSADVVDVRFEGPELSIRAAIA* |
| Ga0120118_11194801 | 3300012010 | Permafrost | ELIADARAAGITEITALVSSSNPAAVALLRRIANVLDIRLEGPELSIRAAIA* |
| Ga0120118_11585402 | 3300012010 | Permafrost | RAAGITEITALASSDNPATLALLRRTTDVVDVHFEGPELSIRAAIA* |
| Ga0120152_10745731 | 3300012011 | Permafrost | ITEITALASSDNPAVLALLRRSADLLDVRFEGPELSIRAAIA* |
| Ga0137363_110777592 | 3300012202 | Vadose Zone Soil | AAGITQITALASSDNPAALALLRSTANVTDVRFEGPELSIRAAIA* |
| Ga0137380_107300362 | 3300012206 | Vadose Zone Soil | ELVADARAAGIAEISALVRTDNPNALAVVKRIACVTDVHYEGPELSIRAAIA* |
| Ga0137376_111983751 | 3300012208 | Vadose Zone Soil | ELLADARAAGITQITALASSDNRAALALLRRTANVTDVRFEGPELSIRAAIA* |
| Ga0137376_113924222 | 3300012208 | Vadose Zone Soil | ADARAAGITQITALASSDNPAALALLRRTANVTDVRFEGPELSIRAAIA* |
| Ga0137376_117680542 | 3300012208 | Vadose Zone Soil | ALARELLADARAAGISGITALTGSDNRATLALLRRIARVLDVRLEGTEIWIRAAIA* |
| Ga0137367_110954821 | 3300012353 | Vadose Zone Soil | KLIADARTAGITEITALVANDNPAALALLRRTLSALDIRLEGPELWIRAALA* |
| Ga0137384_114456221 | 3300012357 | Vadose Zone Soil | AELIADARAAGITEITALASSDNPAALALLRRTAHVLDVCFEGPQLSIRAAIA* |
| Ga0137407_115876801 | 3300012930 | Vadose Zone Soil | IREITALASSDNPAAVALLRRTSKVLDIRLEGPELSIRAAIA* |
| Ga0153915_117727522 | 3300012931 | Freshwater Wetlands | AGITEITALVSSDNHAALALVRRIANVLDIRLEGPELSIRAAIA* |
| Ga0164300_108204862 | 3300012951 | Soil | AGEFGTNARAPGITEITALATSDNRAAVALLRRIAQVRDITFEGPELSIRAAIA* |
| Ga0164298_104603132 | 3300012955 | Soil | SGIRVITALASSDNPAAVALLRRTAKVLDVRLEGPELSIRAAIA* |
| Ga0164298_107904701 | 3300012955 | Soil | DARAAGITEITALATSDNRAAVALLSRIAQVRDITFEGPELSIRAAIA* |
| Ga0134077_104364391 | 3300012972 | Grasslands Soil | AGIIEITALASSDNPAAVALLRRISNVLDVQLEGPELSIRAAIA* |
| Ga0164309_102297661 | 3300012984 | Soil | ITEITALASSDNPAAVALIRRIARVRDITLEGPELSIRAAIA* |
| Ga0157371_111831381 | 3300013102 | Corn Rhizosphere | ITEITALTSSDTPAALALVRRIAKVVDVCFEGPELSIRAAIA* |
| Ga0157370_107789772 | 3300013104 | Corn Rhizosphere | VDARAAGITQVTALASSDNPAALALLRRTTNVTDIRLEGPELSIRAAIA* |
| Ga0120149_10608031 | 3300014058 | Permafrost | YEHRGIGSALAGELLADERAAGITQITALASSDNPAALALLRRTANVTDVRFEGPELSIRAAIA* |
| Ga0167638_10373111 | 3300015197 | Glacier Forefield Soil | SDNPAAVALLRRIANALEIRLEGPELSIRAAIAS* |
| Ga0134073_103844611 | 3300015356 | Grasslands Soil | ARAAGITEISALASGDNRAALALIRRSACILEVRLEGPEQAIRAAIA* |
| Ga0132256_1032155441 | 3300015372 | Arabidopsis Rhizosphere | ELLVDARAAGITEITALAAGDNPAALRLLRRTSNVVDVHFEGPELSIRAAIA* |
| Ga0132257_1019022321 | 3300015373 | Arabidopsis Rhizosphere | DARAACITEITALAASDNRAAVALLRRISKVLDVRLEGPELSIRAAIA* |
| Ga0187786_104904952 | 3300017944 | Tropical Peatland | LDDARAAGITEITALASGDNRAALALLRRVARILEVRLEGPEQSIRAAIA |
| Ga0187776_107865591 | 3300017966 | Tropical Peatland | ARELIADARAAGVTEISALTAADNQAALALIRRCAKVRRVAFEGPELSISAAIA |
| Ga0187774_106100181 | 3300018089 | Tropical Peatland | ADARAEGVSEITALVASDNRAAVAVLRRTARLLDVRFEGPELSIRAAIV |
| Ga0066667_122731622 | 3300018433 | Grasslands Soil | AAELLADARAAGITQITALASSDNPAALALLRRTANVVDVRFEGPELSIRAAIA |
| Ga0193751_11581141 | 3300019888 | Soil | AAELLGDARAAGITQITALASSDNPAALALLRRTANVTDVRFEGPELSIRAAIA |
| Ga0193751_11897521 | 3300019888 | Soil | LDDARAAGITEISALASGDNRAALALIRRTACILEVRLEGPEQAIRAAIA |
| Ga0206352_107800882 | 3300020078 | Corn, Switchgrass And Miscanthus Rhizosphere | LVADARLAGITEITALTTPDNPAALALVKRIARVVDVCFEGPELSIRAAIA |
| Ga0206353_106657421 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | SGIGAALAAELVADARMAGITEITALTSSDNPAALALVRRIAKVVDVCFEGPELSIRAAI |
| Ga0247661_10327812 | 3300024254 | Soil | RAAGVTEITALVSRDNPTALALLRRIANVRDIRFDGPDLSIRAALA |
| Ga0247687_10783091 | 3300024286 | Soil | LAGELVAEARAEGVKEITALVSADNPAAVSLLRRIANVLSVRFEGSDLSIRAAIA |
| Ga0207682_104925321 | 3300025893 | Miscanthus Rhizosphere | VTEITALVANDNPAALALLRRILDVLDIRFEGPELSVRAAL |
| Ga0207699_103890062 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | ALASELLVDARAAGITQITALASSDNPAALALLRRTTNVTDIRLEGPELSIRAAIA |
| Ga0207693_107857142 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MTHQAPSPTLASSDNPAALALLRRTANVTDVRFEGPELSIRAAIA |
| Ga0207663_102218951 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | LIADARAAGVTEITALVSGDNRAAVALLRRVAGALEIRFEGPALSIRARLPEAA |
| Ga0207649_103346002 | 3300025920 | Corn Rhizosphere | IGSALASELLADARAAGITEITAVASSTNSAAVALLRRTANVLDVRLEGPELSIRAAIA |
| Ga0207652_104561601 | 3300025921 | Corn Rhizosphere | ALTTPDNPAALALVKRIARVVDVCFEGSELSIRAAIA |
| Ga0207652_110247722 | 3300025921 | Corn Rhizosphere | AAGITQITALASSDNPAALALLRRTTNVTDIRLEGPELSIRAAIA |
| Ga0207665_104195691 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | RAAGITEITAQASGENRAALALIRRSARVLDIRLEGPEQTIRAAIA |
| Ga0207661_114831342 | 3300025944 | Corn Rhizosphere | RMAGITEITALTSSDNPAALALVRRIAKVVDVCFEGPELSIRAAIA |
| Ga0209474_104679321 | 3300026550 | Soil | ARAAGITEISALASGDNRAALALIRRSACILEVRLEGPEQAIRAAIA |
| Ga0209488_102825641 | 3300027903 | Vadose Zone Soil | TRAAGITEIVALASNDNPAVLALLRRSADVVDVRFEGPELSIRAAIA |
| Ga0265322_100312492 | 3300028654 | Rhizosphere | ALAGELLADARAAGITVVTALAGADNRAALALMRRCATVLDLRLEGPEIAIRAAIA |
| Ga0307503_100584773 | 3300028802 | Soil | EITALVASDNPAALALLRRILNVLDVRLEGPELWIRAALR |
| (restricted) Ga0255310_100778142 | 3300031197 | Sandy Soil | ELIADARASGIREITALAASDNPAAVALLRRTAKVLDIRLEGPELSIRAAIS |
| Ga0265332_102642611 | 3300031238 | Rhizosphere | ITALATGDNRAALALIRRVASISEIRLEGPEQSIRAAIA |
| Ga0307373_106341501 | 3300031672 | Soil | DARAAGITEITALASSDNPAALALLRRTAHVHDVHFEGPELSIRACIA |
| Ga0265314_102180611 | 3300031711 | Rhizosphere | TRLLLDDARASGITEITALATGDNRAALALIRRVASISEIRLEGPEQSIRAAIA |
| Ga0318562_108047361 | 3300032008 | Soil | SALTAELIADARASGVTEITALVSTDNPAALALVRRLLSALDIRIDGPELSIRAAIA |
| Ga0318506_102063792 | 3300032052 | Soil | TEITALVSSDNPAALAVIRPLLRAIDIRFEGPELSIRAAIA |
| Ga0306920_1015350541 | 3300032261 | Soil | LIADARAAGITEITALASSGNSAAVKLLRRTANVLDVRFEGSDLSIRAAIA |
| Ga0335080_102492673 | 3300032828 | Soil | HRGIGSALTRILLDDARVAGIKEITALATGDNRAAVALIRRIADVLEIRLEGPEQSIRAAIA |
| Ga0335069_100037501 | 3300032893 | Soil | AAGITEITALVSSNNPAAVALIRRIAGVLAISFEGRELAIRAAIT |
| Ga0335077_109315523 | 3300033158 | Soil | TALVSSDNPAAVAVLRRIANALDISLEGPELWIRAAIA |
| Ga0334722_103840341 | 3300033233 | Sediment | GIGSTLAAELIADARASGIREITALASSDNPAAVALLRRTARVLDIRLEGPELSIRAAIA |
| Ga0314864_0154955_2_160 | 3300033805 | Peatland | ELLADARAAGITEITALVTSGNAAALALLRRVARVLEVTFEGPQLAVRAAIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |