Metagenome / Metatranscriptome Family F089269

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089269
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	99 residues
Representative Sequence	IFYSVEPECNSGFSFLTFAASHEFAEALTDNVPTPGSNPDFPQAWNDSAGFEVGDKCGGSGTLTSKKGSWTVTQYYLNSLHGCSTGNYTSP
Number of Associated Samples	89
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	96.33 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.064 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (9.174 % of family members)
Environment Ontology (ENVO)	Unclassified (36.697 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.881 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.97% β-sheet: 18.49% Coil/Unstructured: 65.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01061	ABC2_membrane	2.75
PF07732	Cu-oxidase_3	2.75
PF00583	Acetyltransf_1	2.75
PF02482	Ribosomal_S30AE	2.75
PF07310	PAS_5	1.83
PF09955	DUF2189	1.83
PF00313	CSD	0.92
PF13692	Glyco_trans_1_4	0.92
PF13549	ATP-grasp_5	0.92
PF12698	ABC2_membrane_3	0.92
PF07690	MFS_1	0.92
PF12706	Lactamase_B_2	0.92
PF05016	ParE_toxin	0.92
PF14542	Acetyltransf_CG	0.92
PF13488	Gly-zipper_Omp	0.92
PF01425	Amidase	0.92
PF01035	DNA_binding_1	0.92
PF02518	HATPase_c	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1544	Ribosome-associated translation inhibitor RaiA	Translation, ribosomal structure and biogenesis [J]	2.75
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	2.75
COG5388	Uncharacterized conserved protein	Function unknown [S]	1.83
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.92
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.92
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.06 %
Unclassified	root	N/A	22.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.06 %
Unclassified	root	N/A	22.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.06 %
Unclassified	root	N/A	22.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	72.48 %
Unclassified	root	N/A	22.94 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	55.05 %
Unclassified	root	N/A	22.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	55.05 %
Unclassified	root	N/A	22.94 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	3.67 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.92 %

Name	Rank	Taxonomy	Distribution
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	54.13 %
Unclassified	root	N/A	22.94 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	3.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %
Crenotrichaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Crenotrichaceae	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %

Name	Rank	Taxonomy	Distribution
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	54.13 %
Unclassified	root	N/A	22.94 %
unclassified Caulobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae	3.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.92 %
Crenothrix	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Crenotrichaceae → Crenothrix	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %

Name	Rank	Taxonomy	Distribution
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	54.13 %
Unclassified	root	N/A	22.94 %
Caulobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	3.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Paraburkholderia aromaticivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aromaticivorans	0.92 %
Crenothrix polyspora	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Crenotrichaceae → Crenothrix → Crenothrix polyspora	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001565\|A35518A_1090771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1517	Open in IMG/M
3300002568\|C688J35102_119196518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	653	Open in IMG/M
3300002568\|C688J35102_119945999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300003792\|Ga0055540_1021462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	1676	Open in IMG/M
3300004092\|Ga0062389_101191025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	947	Open in IMG/M
3300005176\|Ga0066679_10286574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	1068	Open in IMG/M
3300005177\|Ga0066690_10795561	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300005184\|Ga0066671_10873755	Not Available	571	Open in IMG/M
3300005238\|Ga0073692_1065085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	572	Open in IMG/M
3300005329\|Ga0070683_101036629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	788	Open in IMG/M
3300005337\|Ga0070682_101857485	Not Available	527	Open in IMG/M
3300005355\|Ga0070671_100173644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1823	Open in IMG/M
3300005355\|Ga0070671_100741793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	853	Open in IMG/M
3300005435\|Ga0070714_101570647	Not Available	643	Open in IMG/M
3300005439\|Ga0070711_101453162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	597	Open in IMG/M
3300005451\|Ga0066681_10843840	Not Available	551	Open in IMG/M
3300005454\|Ga0066687_10760809	Not Available	576	Open in IMG/M
3300005526\|Ga0073909_10273302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	759	Open in IMG/M
3300005526\|Ga0073909_10654077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	523	Open in IMG/M
3300005530\|Ga0070679_101563060	Not Available	607	Open in IMG/M
3300005535\|Ga0070684_101352774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	670	Open in IMG/M
3300005546\|Ga0070696_100760895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	794	Open in IMG/M
3300005547\|Ga0070693_101536935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	521	Open in IMG/M
3300005548\|Ga0070665_101889810	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005561\|Ga0066699_10807786	Not Available	660	Open in IMG/M
3300005598\|Ga0066706_10115437	All Organisms → cellular organisms → Bacteria	1974	Open in IMG/M
3300005614\|Ga0068856_100880962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	914	Open in IMG/M
3300005615\|Ga0070702_100838072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aromaticivorans	714	Open in IMG/M
3300005616\|Ga0068852_102088012	Not Available	588	Open in IMG/M
3300005764\|Ga0066903_104126014	Not Available	778	Open in IMG/M
3300005834\|Ga0068851_10612866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	663	Open in IMG/M
3300006046\|Ga0066652_101586794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	602	Open in IMG/M
3300006175\|Ga0070712_100518163	Not Available	1001	Open in IMG/M
3300006175\|Ga0070712_100967411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	736	Open in IMG/M
3300006237\|Ga0097621_100239909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	1584	Open in IMG/M
3300006237\|Ga0097621_100576384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1026	Open in IMG/M
3300006237\|Ga0097621_101152100	Not Available	729	Open in IMG/M
3300006237\|Ga0097621_101586435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	622	Open in IMG/M
3300006800\|Ga0066660_10422500	Not Available	1107	Open in IMG/M
3300006914\|Ga0075436_100994815	Not Available	629	Open in IMG/M
3300009101\|Ga0105247_10137201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1599	Open in IMG/M
3300009101\|Ga0105247_11124766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	621	Open in IMG/M
3300009174\|Ga0105241_10068056	All Organisms → cellular organisms → Bacteria	2758	Open in IMG/M
3300009174\|Ga0105241_10618729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	980	Open in IMG/M
3300009174\|Ga0105241_11866231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	588	Open in IMG/M
3300009177\|Ga0105248_11999879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	658	Open in IMG/M
3300009545\|Ga0105237_10841729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	924	Open in IMG/M
3300009551\|Ga0105238_11090701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	821	Open in IMG/M
3300009551\|Ga0105238_12052740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	606	Open in IMG/M
3300010152\|Ga0126318_11031150	Not Available	695	Open in IMG/M
3300010303\|Ga0134082_10290590	Not Available	683	Open in IMG/M
3300010320\|Ga0134109_10462609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	517	Open in IMG/M
3300010337\|Ga0134062_10307182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	753	Open in IMG/M
3300010359\|Ga0126376_12884607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	530	Open in IMG/M
3300010371\|Ga0134125_12748494	Not Available	535	Open in IMG/M
3300010375\|Ga0105239_10000437	All Organisms → cellular organisms → Bacteria → Proteobacteria	60907	Open in IMG/M
3300010375\|Ga0105239_12617790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	588	Open in IMG/M
3300010399\|Ga0134127_13443542	Not Available	518	Open in IMG/M
3300010401\|Ga0134121_12505096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	558	Open in IMG/M
3300011119\|Ga0105246_11772506	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300011270\|Ga0137391_11511679	Not Available	516	Open in IMG/M
3300012212\|Ga0150985_108814041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	561	Open in IMG/M
3300012212\|Ga0150985_111926319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	784	Open in IMG/M
3300012469\|Ga0150984_120765036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	501	Open in IMG/M
3300012469\|Ga0150984_123413039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	1065	Open in IMG/M
3300012989\|Ga0164305_12059932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	522	Open in IMG/M
3300013105\|Ga0157369_10408173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	1409	Open in IMG/M
3300013105\|Ga0157369_12384916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	536	Open in IMG/M
3300013307\|Ga0157372_10015635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8137	Open in IMG/M
3300014969\|Ga0157376_12733568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	533	Open in IMG/M
3300015374\|Ga0132255_105420782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	540	Open in IMG/M
3300018433\|Ga0066667_11958580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	537	Open in IMG/M
3300018482\|Ga0066669_10474590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	1079	Open in IMG/M
3300021384\|Ga0213876_10510826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	639	Open in IMG/M
3300021445\|Ga0182009_10197498	Not Available	978	Open in IMG/M
3300021478\|Ga0210402_10278795	Not Available	1546	Open in IMG/M
3300025504\|Ga0208356_1105700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	531	Open in IMG/M
3300025898\|Ga0207692_10204829	Not Available	1162	Open in IMG/M
3300025914\|Ga0207671_10559614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	912	Open in IMG/M
3300025916\|Ga0207663_10915680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	701	Open in IMG/M
3300025924\|Ga0207694_11358996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	601	Open in IMG/M
3300025928\|Ga0207700_11312649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	644	Open in IMG/M
3300025929\|Ga0207664_10896390	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300025929\|Ga0207664_11841619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	528	Open in IMG/M
3300025931\|Ga0207644_10704638	All Organisms → cellular organisms → Bacteria → Proteobacteria	842	Open in IMG/M
3300025931\|Ga0207644_11203253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	637	Open in IMG/M
3300025941\|Ga0207711_11722782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	570	Open in IMG/M
3300025944\|Ga0207661_11061850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	746	Open in IMG/M
3300026078\|Ga0207702_10413108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	1303	Open in IMG/M
3300026078\|Ga0207702_12035965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	564	Open in IMG/M
3300026142\|Ga0207698_10506104	Not Available	1176	Open in IMG/M
3300026142\|Ga0207698_12252380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	557	Open in IMG/M
3300027787\|Ga0209074_10338562	Not Available	613	Open in IMG/M
3300028379\|Ga0268266_11956358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	560	Open in IMG/M
3300028824\|Ga0307310_10448835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	645	Open in IMG/M
3300029957\|Ga0265324_10320436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	528	Open in IMG/M
3300029987\|Ga0311334_10878756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Crenotrichaceae → Crenothrix → Crenothrix polyspora	741	Open in IMG/M
3300031235\|Ga0265330_10184082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	884	Open in IMG/M
3300031344\|Ga0265316_11093259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	553	Open in IMG/M
3300031711\|Ga0265314_10652553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	536	Open in IMG/M
3300031753\|Ga0307477_10222744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	1309	Open in IMG/M
3300031939\|Ga0308174_11411282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	596	Open in IMG/M
3300031944\|Ga0310884_10944506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	534	Open in IMG/M
3300032008\|Ga0318562_10910123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	502	Open in IMG/M
3300032074\|Ga0308173_11524277	Not Available	628	Open in IMG/M
3300032074\|Ga0308173_11618346	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300032770\|Ga0335085_10073438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	4515	Open in IMG/M
3300032782\|Ga0335082_11649082	Not Available	515	Open in IMG/M
3300032954\|Ga0335083_11430815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	527	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.96%
Host-Associated	Host-Associated	44.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.13%
Plants	Host-Associated → Plants	44.04%
Aquatic	Environmental → Aquatic	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.17%
Roots	Host-Associated → Plants → Roots	5.50%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Peat	Environmental → Terrestrial → Peat	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.11%
Loam	Environmental → Terrestrial → Soil → Loam	18.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.35%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.01%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.42%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Endophytes	Host-Associated → Plants → Roots → Endophytes	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.59%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	3.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	0.92%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001565	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-5cm-18A)- 1 week illumina new	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003792	Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2	Host-Associated	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005238	Microbial communities on the surface of aged kaolinite enhanced biochar from soil in Sydney, Australia	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300029957	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG	Host-Associated	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A35518A_10907714	3300001565	Permafrost	RLSLVGSEMCIRDRCNSGYDYLTFAASHEFAEATTDNVPTPLVNPDYPQAWNDSTGYEIGDKCSGSGTLTSLAGSWEVTQYYLNSLHGCSVQTTYTSP*
C688J35102_1191965182	3300002568	Soil	LISCQSFGAYHFSTNQAKIAKKSNVFYSVEPECNSGFGFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSAGYEIGDKCGGSGTLTAQSGSWEVTQYYLNSLHGCSTGNYSSP*
C688J35102_1199459993	3300002568	Soil	VPTPGSNPDFPQAWNDDLGFEIGDKCSGRGTLTSTGGSWSVTQYYLNSKHGCSTQSTYTSP*
Ga0055540_10214622	3300003792	Arabidopsis Root	KQQIRAGVLPPHDLNTLYMIYFPVDVTITLDGITSCVDFGAYHFATNDLEMKKNNIFYTVEPDCHSSMASIEFAASHEFAEATTDNIPTPGSNPDFPQAWNDANGFEVADICGGSGQLTRGGKSYTVTQFFLNSTNACSTGNYTSP*
Ga0062389_1011910251	3300004092	Bog Forest Soil	RQTATNIFYAVEPDCGSGFNFITFAASHEFAEATTDNIPTPGSNPKFPQAWNTSDGYEIADLCSSSGNMTDATRSYEVTQVFLDTTNACSTGNYTSP*
Ga0066679_102865742	3300005176	Soil	GLTSCQSFGAYHFASKDFRRAKAHNILYSVEPECNSGFGFLTFAASHEFAEATTDNVPTPGSNPDFPQAWNDAAGFEVGDKCSSSGTLSTSSDSWEVTQYYLNSLHGCSTGNYHSP*
Ga0066690_107955611	3300005177	Soil	VFGAYHFAKNDSKWAKKRNIFYSVEPECNSGFAYLTFAASHEFAEATADNVPTPGVAPNYPQAWNDATGNEIGDKCSTNGTLTSSDGSWNVTQVYLNSLHGCSTGDYTSP*
Ga0066671_108737551	3300005184	Soil	FAYLTFAASHEFAEATTDNVPTPGVAPNYPQAWNDATGNEIGDKCSTNGTLTSSDGSWNVTQVYLNSLHGCSTGDYTSP*
Ga0073692_10650851	3300005238	Soil	YMIYFPSNITILLDGQASCVVFGAYHFATIDTRRSKPHNILYSVEPECNSGFDYLTFAASHEFAEAMTDNIPTPLVNPDYPQAWNDSTGYEIGDKCSTGGTLTSLAGSWSVTQYYLNSLHGCSTTANYTSP*
Ga0070683_1010366291	3300005329	Corn Rhizosphere	NITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEVGDKCGGSGTLTSGSGHWVVTQYYLNSKTGCSTGNYTSP*
Ga0070682_1018574851	3300005337	Corn Rhizosphere	FAEATTDNVPTPGSFPDFPQAWNDENGFEIGDLCGNSGQLTAGSSHWTVTQYMLNSTGNCSTGNYTSP*
Ga0070671_1001736444	3300005355	Switchgrass Rhizosphere	SHEYAEATTDNVPTPGSNPDFPQAWNDSAGFEIGDKCGGQGTLTSSGGSWTVTQYYLNSLHGCSTGNYTSP*
Ga0070671_1007417932	3300005355	Switchgrass Rhizosphere	SGYDYLTFAASHEFAEAMSDNVPTPGVIPDYPQAWNDSTGYETADKCSTSGTLTGTAGSWEVTQVYLNSLHGCSTGDYTSP*
Ga0070714_1015706471	3300005435	Agricultural Soil	YTVEPECNSGLDYLTYAASHEFAEAVTDNVPTPGNAPDYPQAWNDTGGAEIGDLCPFEGTLSDGTNSWMVTQVYLNSLKGCSTGDYTSP*
Ga0070711_1014531621	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	IFYSVEPECNSGFSFLTFAASHEFAEALTDNVPTPGSNPDFPQAWNDSAGFEVGDKCGGSGTLTSKKGSWTVTQYYLNSLHGCSTGNYTSP*
Ga0066681_108438402	3300005451	Soil	SDNLFYAVEPECNSGFDYLTYAASHEFAEAVTDNIPTPGNIPDFPQAWNDTSGAEAADLCPFEGTLTDGKNTWTVTQYYLNSILGCSMGNYQSP*
Ga0066687_107608092	3300005454	Soil	NDLKLSKRNLFYSVEPGCHYALNNITFAASHEYAEATSDNVPTPGSFPDFPQAWNDANGFEIGDKCGGSATLTSASGHWVVTQYYLNSKNGCSTGNYTSP*
Ga0073909_102733021	3300005526	Surface Soil	GAYHFATIDTKMAKKRNVFYAVEPECNSGFSFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDVNGFEIGDKCSGRGTLTSTGGSWTVTQYYLNSVHGCSTETQYTSP*
Ga0073909_106540771	3300005526	Surface Soil	VLPPRDPNTLYMIYFPSNISINLDGLISCQSYGAYHFSTNQAKIAKRSNIFYSVEPECNSGFSFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSAGFEIGDKCGGQGTLSSSGGSWTVTQYYLNSLHGCSTGNYTSP*
Ga0070679_1015630601	3300005530	Corn Rhizosphere	DDDVQAELKYQIRKGNLPARDKNTLYMIYFPVTVSISLDGLQSCVDFGAYHFASIDTKLARRKNIFYAVEPDCHSSINSITFAASHEYAEATTDNVPTPGSFPDFPQAWNDSNGFEIGDLCGSSGQLTAGSSHWTVTQYMLNSTSHCSTGNYTSP*
Ga0070684_1013527741	3300005535	Corn Rhizosphere	VEPECNSGYDYLTFAASHEFAEATTDNVPTPLVNPDYPQAWNDSTGYEIGDKCSTSGTLAGIAGSWEVTQVYLNTLHDCSTGDYTSP*
Ga0070696_1007608951	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	IVIDGQASCVVFGAYHFATNDAKRARRHNIFYSVEPECGSGFDYLTFAASHEFVEAVTDNVPTPLVNPDYPQAWNDQTGMETADKCSGSGTLTSVGGSWNVTQYYLNSLHGCSTATTYTSP*
Ga0070693_1015369351	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	ITITLDGLVSCQSFGAYHFATNDLKLSKKNLFYSVEPSCHYSLTNITFAASHEYAEATTDNVPTPGSFPDFPQAWNDANGAEIGDKCGGSGTLTAGSGHWIVTQYYLNSKNGCSTGNYTSP*
Ga0070665_1018898102	3300005548	Switchgrass Rhizosphere	QMKKSNIFYTVEPDCGGSINGITFAASHEFAEAATDNIPTPGSNPAFPQAWNDANGFEVADICGGSGQLTKGSKTYTVTQYFLNSRNACSTGNYTSP*
Ga0066699_108077862	3300005561	Soil	NDSKWARKHNIFYSVEPECNSGFAFLTFAASHEFAEAVTDNVPTPGVTPDYPQAWNDATGMEIGDKCSTRGKLESSTGAWRVTQVYLNSLHGCSRTKVYASP*
Ga0066706_101154373	3300005598	Soil	NIFYSVEPECNSGFDYLTFAASHEFAEATTDNVPTPGVLPDYPQAWNDANGFEIGDKCSGNGTLSSSDGSWNVTQVYLNSLHGCSTTANYTSP*
Ga0068856_1008809621	3300005614	Corn Rhizosphere	SGFGFLTFAASHEYAEATTDNVPTPGSNPDYPQAWNDAQGFEIGDKCGGSGTLTSAGGSWTVTQYWLNSRSGCSTGNYTSP*
Ga0070702_1008380722	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	NVTITIDNLTSCVDFGAYHFATNDLEMVKSNIFYTVEPDCRSGFSSITFAASHEFAEATTDNIPTPGSNPAFPQAWNTSGGFEIADLCGGSGTLTAGSNHYNVTQYFLNSTGRCSTGNYTSP*
Ga0068852_1020880122	3300005616	Corn Rhizosphere	FYSVEPECNSGFDSLTIAASHEFAEATTDNIPTPGSSPDFPQAWNDVHGFEIADLCNSVGTLTDGVNTFQVTQYYLNSVTGCSTGNYQSP*
Ga0066903_1041260141	3300005764	Tropical Forest Soil	ATNDLKLARGNIFYAVEPDCHSGIASITFAASHEYAEATTDNVPTPGSFPDFPQAWNDANGFEIGDKCGGSGQLTAGASHWTVTQYYLNSKHACSTGNYTSP*
Ga0068851_106128661	3300005834	Corn Rhizosphere	INNITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEVGDKCGGSGTLTSGSGHWVVTQYYLNSKTGCSTGNYTSP*
Ga0066652_1015867942	3300006046	Soil	FYSVEPECNSGFSFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSSGFEIGDRCGNSGTLTAATGSWTVTQYYLNSRHGCSTGNYTSP*
Ga0070712_1005181631	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	NVPTPGSIPDFPQAWNDVHGEEAGDLCGDAGTLSDGTHSWTVTQYYLNTIEACSTGNYQSP*
Ga0070712_1009674111	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	CNYGLNTITFIAAHEFAEATTDNVPTPGSNPDFPQAWNDAQGFEIGDKCSTSGQLSDGTKSFTVTQVYLNSTGHCSTGNYHSP*
Ga0097621_1002399091	3300006237	Miscanthus Rhizosphere	DFGAYHFATDDTTLSRRNVFYTVEPDCHSSISSVTFAASHEFAEATTDNVPTPGSFPDFPQAWNDADGFEVGDKCGGSGQLTKGSNHWTVTQYWLTTNNSGNGGCSTGNYTAP*
Ga0097621_1005763841	3300006237	Miscanthus Rhizosphere	NVPTPGSNPDFPQAWNDVNGFEIGDKCSGRGTLTSTGGSWTVTQYYLNSLHGCSTQATYTSP*
Ga0097621_1011521001	3300006237	Miscanthus Rhizosphere	SHEFAEATTDNIPTPGSTPDFPQAWNDVRGHEIADLCNSVGALTDGVHTYQVTQYYLNSIRGCSTGNYQSP*
Ga0097621_1015864351	3300006237	Miscanthus Rhizosphere	GAYHFATNDAKRAKKSNIFYSVEPECDSGYDYLTFAASHEFAEAMSDNVPTPGVIPDYPQAWNDSTGYETADKCSTSGTLTGTAGSWEVTQVYLNSLHGCSTGDYTSP*
Ga0066660_104225002	3300006800	Soil	NYLTYAASHEFAEAVTDNVPTPGNAPDYPQAWNDTGGAEIGDLCPFEGTLSDGTNSWIVTQVYLNSLKGCSTGDYTSP*
Ga0075436_1009948152	3300006914	Populus Rhizosphere	YLTFAASHEFAEAMTDNVPTPLVHPAYPQAWNDDQAFEIGDKCSTSGRLTSLAGHWQVTQVYLNSLHGCSTTKNYTSP*
Ga0105247_101372014	3300009101	Switchgrass Rhizosphere	EATTDNIPTPGSSPDFPQAWNDVHGFEIADLCNSVGTLTDGVNTFQVTQYYLNSVTGCSTGNYQSP*
Ga0105247_111247662	3300009101	Switchgrass Rhizosphere	QSFGAYHFATNDLKLSKRNLFYAVEPGCHYTINNITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEVGDKCGGSGTLTSGSGHWVVTQYYLNSKTGCSTGNYTSP*
Ga0105241_100680561	3300009174	Corn Rhizosphere	LFYAVEPGCHYSLNNITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEVGDKCGGSGTLTSGSGHWVVTQYYLNSKTGCSTGNYTSP*
Ga0105241_106187292	3300009174	Corn Rhizosphere	YHFATNDLKLSKRNLFYAVEPSCHYSINNITFAASHEYAEATTDNVPTPGNFPDFPQAWNDANGAEIGDKCGGSGTLTAGSGHWVVTQYYLNSKNGCSTGNYTSP*
Ga0105241_118662311	3300009174	Corn Rhizosphere	DPNTLYMIYFPSNISINLDGLISCQSYGAYHFSSNQVKIARKSNVFYSVEPECNSGFSFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSAGFEIGDKCGGQGTLTSSGGSWTVTQYYLNSLHGCSTGNYTSP*
Ga0105248_119998791	3300009177	Switchgrass Rhizosphere	LPAHDLDTLYMIYFPQNVTITLDGITSCIDFGAYHFATNDTEMRKNNIFYSVEPDCNSSINSITFAASHEFAEATTDNIPTPGSNPDFPQAWNDANGFEVADICGGSGTLTRGSKSYTVTQFFLNSTNSCSTGNYTSP*
Ga0105237_108417291	3300009545	Corn Rhizosphere	DFGAYHFATIDTKLAKKRNVFYAVEPDCHSSINSITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEIGDKCGGSGQLTAGSSHWTVTQFYLLTNACSTGNYTSP*
Ga0105238_110907011	3300009551	Corn Rhizosphere	DGITITLDGLVSCQSFGAYHFATNDLKLSRNNLFYSVEPSCHYSLTNITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEIGDKCGGSGQLTAGASHWTVTQYYLNTKSGCSTGNYTSP*
Ga0105238_120527401	3300009551	Corn Rhizosphere	KKSNIFYTVEPDCGGSINGITFAASHEFAEAATDNIPTPGSNPAFPQAWNDANGFEVADICGGSGQLTKGSKTYTVTQYFLNSRNACSTGNYTSP*
Ga0126318_110311501	3300010152	Soil	YHFASNDKTWAKKKNIFYSVEPECNSGYDYLTFAASHEFAEATTDNVPTALVNPDYPQAWNDTTGYEIGDKCSGSGTLTGTAGSWEVTQVYLNTLHGCSTGDYTSP*
Ga0134082_102905901	3300010303	Grasslands Soil	RDFGAYHFAKRTGGLRSDNLFYAVEPECNSGFDYLTYAASHEFAEAVTDNIPTPGNIPDFPQAWNDTSGAEAADLCPFEGTLTDGKNTWTVTQYYLNSILGCSMGNYQSP*
Ga0134109_104626091	3300010320	Grasslands Soil	EPECNSGFDYLTYAASHEFAEAVTDNIPTPGNVPDFPQAWNDTSGAEAADLCPFEGTLTDGKNTWTVTQYYLNSILGCSMGNYQSP*
Ga0134062_103071822	3300010337	Grasslands Soil	TGGLRDNNLFYTVEPECNSGFDYLTYAASHEFAEAVTDNIPTPGNVPDFPQAWNDTSGAEAADLCPFEGTLTDGKNTWTVTQYYLNSILGCSMGNYQSP*
Ga0126376_128846071	3300010359	Tropical Forest Soil	TVEPDCHSSMASIEFAASHEFAEATTDNIPTPGSNPDFPQAWNDANGSEIGDKCGGSGTLTASSGHWVVTQYYLNSKNGCSTGNYTSP*
Ga0134125_127484941	3300010371	Terrestrial Soil	KRNLFYAVEPSCHYSINNITFAASHEYAEATTDNVPTPGSFPDFPQAWNDANGAEIGDKCGGSGTLTSGSGHWVVTQYYLNTKNGCSTGNYTSP*
Ga0105239_100004371	3300010375	Corn Rhizosphere	FAEATTDNIPTPGSSPDFPQAWNDIHGFEVADLCNSVGTLTDGVNTFQVTQYYLNSVTGCSTGNYQSP*
Ga0105239_126177902	3300010375	Corn Rhizosphere	STVTITLDGLTSCQDFGAYHFATDDTTLSRRNVFYTVEPDCHSSISSVTFAASHEFAEATTDNVPTPGSFPDFPQAWNDADGFEVGDKCGGSGQLTKGSNHWTVTQYWLTTNNSGNGGCSTGNYTAP*
Ga0134127_134435421	3300010399	Terrestrial Soil	LGSKSCQAFGAYHFASHGKRIARKRNFFYSVEPECGSGFSFLTFAASHEFAEATTDNVPTPGSQPDYPQAWNDTAGFEVGDKCGGSGTLTSDAGHWTVTQFYQNTIHGCSTGSYTSP*
Ga0134121_125050961	3300010401	Terrestrial Soil	NSGFDYLTFAASHEFAEATTDNVPTPLVNPDYPQAWNDSTGYEIGDKCSGSGTLTSLAGSWEVTQYYLNSLHDCSVTATYTSP*
Ga0105246_117725062	3300011119	Miscanthus Rhizosphere	HEYAEATTDNVPTPGSFPDFPQAWNDADGFEVGDKCGGSGTLTSGSGHWVVTQYYLNSKTGCSTGNYTSP*
Ga0137391_115116792	3300011270	Vadose Zone Soil	PDGITITLDGLVSCQSFGAYHFATNDLALSKKNLFYSVEPSCHYALGNITFAASHEFAEATTDNVPTPGSFPDFPQAWNDADGFEIGDKCGGSGQLTAGASHWTVTQYYLNTKNGCSTGNYTSP*
Ga0150985_1088140412	3300012212	Avena Fatua Rhizosphere	FYAVEPECNSGFSFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDALGFEIGDKCSGRATLTSTGGSWSVTQYYLNSLHGCSTETQYTSP*
Ga0150985_1119263191	3300012212	Avena Fatua Rhizosphere	DNVPTPGSNPDFPQAWNDAQGFEIGDKCSGRATLTSTGGSWSVTQYYLNSLHGCSTQSAYTSP*
Ga0150984_1207650362	3300012469	Avena Fatua Rhizosphere	VEPACNYSFNSITFIAAHEFAEATTDNVPTPGSFPDFPQAWNDENGFEIGDLCSPSGQLTAGSSHWTVTQVMLNSTGHCSTGNYTSP*
Ga0150984_1234130391	3300012469	Avena Fatua Rhizosphere	DGLISCQSFGAYHFSTNQAKIAKKSNVFYSVEPECNSGFGFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSAGYEIGDKCGGSGTLTAQSGSWEVTQYYLNSLHGCSTGNYSSP*
Ga0164305_120599322	3300012989	Soil	TNQAKIAKKSNVFYSVEPECNSGFSFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSAGFEIGDKCSGQGTLTSSGGSWTVTQYYLNSLHGCSTGNYSSP*
Ga0157369_104081731	3300013105	Corn Rhizosphere	TIDTKLAKKRNVFYAVEPDCHSSINSITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEIGDKCGGSGQLTAGSSHWTVTQFYLLTNACSTGNYTSP*
Ga0157369_123849161	3300013105	Corn Rhizosphere	KLHATNVFYTVEPECNSGFSYLTYAASHEFAEAVTDNIPTPGNVPDYPQAWNDINGGEAADLCPFDGTLSDGANTWTVTQYYLNSILGCSTGDYQSP*
Ga0157372_1001563511	3300013307	Corn Rhizosphere	DTRLARRSNVFYSVEPECNSGFDYLTYAASHEFAEAVTDNVPTPGNVPDFPQAWNDANGAEVADLCPFEGTLSDDAHSWTVTQIYLNSLLGCSVGNYTSP*
Ga0157376_127335681	3300014969	Miscanthus Rhizosphere	ITDGVLPPRDPNTLYMIYFPSNITINLDGLISCQSYGAYHFSSNQQKIARKSNVFYSVEPECNSGFSFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSAGFEIGDKCGGQGTLSSSGGSWTVTQYYLNSLHGCSTGNYTSP*
Ga0132255_1054207822	3300015374	Arabidopsis Rhizosphere	DLNTLYMIYFPQNVTITLDGLTSCFDFGAYHFATNDTEMRKNNIFYSVEPDCRSSFSSITFAASHEFAEATTDNIPTPGSNPDFPQAWNDANGFEVADICGGSGTLTRGSKSYTVTQFFLNSTNSCSTGNYTSP*
Ga0066667_119585801	3300018433	Grasslands Soil	LISCQSFGAYHFATNDSRIARRTNIFYSVEPECNSGFNFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSSGFEIGDKCGNSGTLTAATGSWTVTQYYLNSRHGCSTGNYTSP
Ga0066669_104745901	3300018482	Grasslands Soil	TNAAKIARRRNIFYSVEPECNSGFNFLTFAASHEFAEATTDNVPTPGSNPDFPQAWNDAQGFEVGDKCGGSGTLTSAAGHWNVTQYYLNSKHGCSTGNYTSP
Ga0213876_105108262	3300021384	Plant Roots	NVTITLDGLTSCVDFGAYHFATVDDALSKKNVFYTVEPDCHSSIGSITFAASHEFMEATTDNVPTPGSFPDFPQAWNDSNGFEVADLCGGSGQLTAGASHWTVTQYFLNSTMKCSVGNYTSP
Ga0182009_101974983	3300021445	Soil	LVNPDYPQAWNDDQGFEIGDKCSTSGKLTSLAGTWQVTQVYLNSLHGCGTTKVYSSP
Ga0210402_102787951	3300021478	Soil	FATIDTKIARRRNIFYAVEPECNSGFNYLTYAASHEFAEAVTDNVPTPGNSPDYPQAWNDTSGSEVGDLCPFEATLTDGTNTWTVTQFYLNSLKGCSTGNYTSP
Ga0208356_11057002	3300025504	Arctic Peat Soil	TFAASHEFAEATTDNIPTPGSVPDFPQAWNDVQGHEVGDLCTGFLGTLTDGTNTYEVTQYYLNSTHACSTANYQSP
Ga0207692_102048291	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	NLFYSVEPSCHYSINNITFAASHEYAEATTDNVPTPGNFPDFPQAWNDAQGFEIGDKCSTSGQLSDGTKSFTVTQVYLNSTGHCSTGNYHSP
Ga0207671_105596141	3300025914	Corn Rhizosphere	FYSVEPECNSGFDSLTIAASHEFAEATTDNIPTPGSSPDFPQAWNDIHGFEVADLCNSVGTLTDGVNTFQVTQYYLNSVTGCSTGNYQSP
Ga0207663_109156801	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	IFYSVEPECNSGFSFLTFAASHEFAEALTDNVPTPGSNPDFPQAWNDSAGFEVGDKCGGSGTLTSKKGSWTVTQYYLNSLHGCSTGNYTSP
Ga0207694_113589962	3300025924	Corn Rhizosphere	DGITITLDGLVSCQSFGAYHFATNDLKLSRNNLFYSVEPSCHYSLTNITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEIGDKCGGSGQLTAGASHWTVTQYYLNTKSGCSTGNYTSP
Ga0207700_113126491	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DGITITLDGLVSCQSFGAYHFATNDLKLSKRNLFYAVEPSCHYSINNITFAASHEYAEPTTDNVPTPGNFPDFPQAWNDANGSEIGDKCGGSGTLTAGSGHWVVTQYYLNSKNGCSTGNYTSP
Ga0207664_108963901	3300025929	Agricultural Soil	VEPECDSGMDYLTYAASHEFAEAVTDNVPTPGNAPDYPQAWNDTGGAEIGDLCPFEGTLSDGTNSWMVTQVYLNSLKGCSTGDYTSP
Ga0207664_118416191	3300025929	Agricultural Soil	YFPSDITINLDGALSCQSFGAYHFATNDSKRARKTNIFYSVEPECNSGFGFLTFAASHEFMEAVTDNVPTPGSNPNYPQAWNDASGYEVGDKCGNSGTLSTKKDSWTVTQYYLNSLHNCSTGNYTSP
Ga0207644_107046383	3300025931	Switchgrass Rhizosphere	ATTDNVPTPGSNPDFPQAWNDAQGFEIGDKCGGQAKLNSTGGSWTVTQYYLNSTHACSTQSTYTSP
Ga0207644_112032531	3300025931	Switchgrass Rhizosphere	LDGLISCQSYGAYHFSSNQQKIARKSNVFYSVEPECNSGFSFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDSAGFEIGDKCGGQGTLTSSGGSWTVTQYYLNSLHGCSTGNYTSP
Ga0207711_117227821	3300025941	Switchgrass Rhizosphere	DFGAYHFATNDTEMRKNNIFYSVEPDCNSSINSITFAASHEFAEATTDNIPTPGSNPDFPQAWNDANGFEVADICGGSGTLTRGSKSYTVTQFFLNSTNSCSTGNYTSP
Ga0207661_110618501	3300025944	Corn Rhizosphere	YSLNNITFAASHEYAEATTDNVPTPGSFPDFPQAWNDADGFEVGDKCGGSGTLTSGSGHWVVTQYYLNSKTGCSTGNYTSP
Ga0207702_104131082	3300026078	Corn Rhizosphere	SGFGFLTFAASHEYAEATTDNVPTPGSNPDYPQAWNDAQGFEIGDKCGGSGTLTSAGGSWTVTQYWLNSRSGCSTGNYTSP
Ga0207702_120359651	3300026078	Corn Rhizosphere	NFAPAVHGALKEAFGAYHFATNDHKLAAKNTFYAVEPECNSGFQFLTFAASHEYAEATTDNVPTPGSNPDFPQAWNDAAGFEIGDKCSGRATLTSDAGSWTVTQYYLNSLHGCSTQTSYTSP
Ga0207698_105061041	3300026142	Corn Rhizosphere	FYSVEPECNSGFDSLTIAASHEFAEATTDNIPTPGSSPDFPQAWNDVHGFEIADLCNSVGTLTDGVNTFQVTQYYLNSVTGCSTGNYQSP
Ga0207698_122523802	3300026142	Corn Rhizosphere	NDLEMAQNNIFYSVEPDCGGSFANITFAASHEFIEATTDNIPTPGSNPAFPQAWNTSDGFETADLCGGSGTLTKGSKQYTVTQYFLNTTGRCSTGNYTSP
Ga0209074_103385622	3300027787	Agricultural Soil	FGAYHFATNDAKIAPRRNIFYTVEPECDSGFDYLTYAASHEFAEAVTDNVPTPGNAPDYPQAWNDTSGSEVGDLCPFEGTLSDGTHTWTVTQFYLNSIKGCSMGNYTSP
Ga0268266_119563581	3300028379	Switchgrass Rhizosphere	QMKKSNIFYTVEPDCGGSINGITFAASHEFAEAATDNIPTPGSNPAFPQAWNDANGFEVADICGGSGQLTKGSKTYTVTQYFLNSRNACSTGNYTSP
Ga0307310_104488351	3300028824	Soil	VVFGAYHFATNDSKRAKKSNIFYSVEPECDSGYDYLTFAASHEFAEAMSDNVPTPGVIPDYPQAWNDSTGYETADKCSTSGTLTGTAGSWEVTQIYLNSLHDCSTGNYTSP
Ga0265324_103204361	3300029957	Rhizosphere	DFGAYHFAVNDTKLSKKNLFYAVEPDCQSGIGFITFAASHEFMEATTDNVPTPGSFPDFPQAWNDSQGFEVADLCGTSGTLTAGSASFEVTQYFLNSTHACSKGNYTSP
Ga0311334_108787562	3300029987	Fen	SNIFYAVEPDCGYNFDTITFIAGHEFAEAMTDNIPTPGSNPAFPQAWNTSDGYEIADLCGGSGKLVAGAKTYSVSQYYLNTTGKCSTGNYTSP
Ga0265330_101840821	3300031235	Rhizosphere	VEPDCQSGIGFITFAASHEFMEATTDNVPTPGSFPDFPQAWNDSQGFEVADLCGTSGTLTAGSASFEVTQYFLNSTHACSKGNYTSP
Ga0265316_110932591	3300031344	Rhizosphere	TLYMIYFPTTVSITLDGLVSCQDFGAYHFAVNDTKLSKKNLFYAVEPDCQSGIGFITFAASHEFMEATTDNVPTPGSFPDFPQAWNDSQGFEVADLCGTSGTLTAGSASFEVTQYFLNSTHACSKGNYTSP
Ga0265314_106525531	3300031711	Rhizosphere	SITLDGLVSCQDFGAYHFAVNDTKLSKKNLFYAVEPDCQSGIGFITFAASHEFMEATTDNVPTPGSFPDFPQAWNDSQGFEVADLCGTSGTLTAGSASFEVTQYFLNSTHACSKGNYTSP
Ga0307477_102227441	3300031753	Hardwood Forest Soil	FYSVEPECNAGFGFLTFAASHEFAEAVTDNVPTPGSNPNWPQAWNDSAGFEVGDKCSGSGTLTAANGSWEVTQYYLNSLHGCSTGNYTSP
Ga0308174_114112822	3300031939	Soil	DAKIAKKTNIFYSVEPECNGGFGFLTFAASHEFAEATTDNVPTPGSNPDFPQAWNDSAGFEIGDKCGGSGTLNGVGGSWEVTQYYLNSKHACSTGNYTSP
Ga0310884_109445062	3300031944	Soil	VEPDCGGSINGITFAASHEFAEAATDNIPTPGSNPAFPQAWNDANGFEVADICGGSGQLTKGSKTYTVTQYFLNSRNACSTGNYTSP
Ga0318562_109101231	3300032008	Soil	NDLKMKASNVFYTVEPDCHSSLASITFAASHEFAEATTDNIPTPGSNPAFPQAWNTSDGFEIGDLCGTSGTLSGNGKSFTVTQYFLNSTGRCSTGNYTSP
Ga0308173_115242771	3300032074	Soil	HEFAEATTDNVPTPGSNPDFPQAWNDASGFEIGDKCGGSGTLNGVGGSWEVTQYYLNSKHACSTGNYTSP
Ga0308173_116183461	3300032074	Soil	CNSGFSFLTFAAAHEYAEATTDNVPTPGSNPDFPQAWNDAQGFEVGDKCSGSGTLTSTAGSWSVTQYYLNSKHGCSTGNYTSP
Ga0335085_100734385	3300032770	Soil	FPQNITIELDGLTSCVDFGAYHFATVDDALSKKNLFYAVEPDCGSSINSITFAASHEYAEATTDNVPTPGSNPDFPQAWNDADGFEIGDKCGTSGTLTAGSSHWTVTQYFLNSTGKCSVGGYTSP
Ga0335082_116490822	3300032782	Soil	EPECGSGFDYLTFAASHEFAEATTDNVPTPLVNPDYPQAWNDSTGMEIGDKCSGNGTLTSLAGSWEVTQYYLNSLHGCSTTATYTSP
Ga0335083_114308152	3300032954	Soil	EPECNAGFDFLTFAASHEYAEATTDNIPTPGSNPKFPQAWNTSDGYEIADLCGSSGTLTAGSAQYTVTQVFLDTTNNCSTGNYTSP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089269

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences