Metagenome / Metatranscriptome Family F073973

Basic Information
Family ID	F073973
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	42 residues
Representative Sequence	MLRRRRLLRTAAVGGVAYAAGHHSATKSAEQQQTDAQQNA
Number of Associated Samples	107
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	1.67 %
% of genes from short scaffolds (< 2000 bps)	1.67 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Most Common Taxonomy
Group	Unclassified (98.333 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (21.667 % of family members)
Environment Ontology (ENVO)	Unclassified (45.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.167 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.88% β-sheet: 0.00% Coil/Unstructured: 44.12%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02627	CMD	4.17
PF00069	Pkinase	2.50
PF06897	DUF1269	1.67
PF01594	AI-2E_transport	1.67
PF00931	NB-ARC	0.83
PF13396	PLDc_N	0.83
PF13360	PQQ_2	0.83
PF11139	SfLAP	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	10.00
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	4.17
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	4.17
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.67
COG4803	Uncharacterized membrane protein	Function unknown [S]	1.67

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.33 %
All Organisms	root	All Organisms	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.33 %
cellular organisms	root	All Organisms → cellular organisms	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.33 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Scaffold	Taxonomy	Length	IMG/M Link
3300012917\|Ga0137395_10193684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1412	Open in IMG/M
3300031819\|Ga0318568_11049699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.17%
Aquatic	Environmental → Aquatic	10.00%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.50%
Freshwater	Environmental → Aquatic → Freshwater	6.67%
Sediment	Environmental → Aquatic → Sediment	3.33%
Peat	Environmental → Terrestrial → Peat	0.83%
Cave	Environmental → Terrestrial → Cave	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.83%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.50%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	21.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.33%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.33%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.67%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.83%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010061	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010074	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010076	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010085	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010087	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010101	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010105	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010116	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010122	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010126	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010134	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010136	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010139	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012224	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012381	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012384	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012395	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012409	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25389J43894_10287031	3300002916	Grasslands Soil	MLRRRVVGRAVVRTAAVGGVAYAAGHHVATKSAQQTQMDAQQNAQIDD
Ga0058897_105268721	3300004139	Forest Soil	MLMRRRLLRTAAVGGVAYAAGHHVANKSAQQQQTDAQQNAQIADVQDQ
Ga0066672_107391471	3300005167	Soil	MLGRRMVARRVVGRRVVRTAVVGGVAYGVGHHMATKSAQQQQMDAQQNA
Ga0066688_109483631	3300005178	Soil	MLRRRRPLLRAAAVGGVAYAAGHHVATKSAEQQYTDAQQSAQIED
Ga0066675_103878361	3300005187	Soil	MFRAGMARRMVRRRAIVRTAAVGGLAYAAGHHAASKSAQQQYMDEQQDAQIA
Ga0070713_1019090922	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFRRRRRPLLRAAAVGGVAYAAGHHVATKSAEQQYTDEQQNAQ
Ga0070706_1000185305	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLRRRRLLRTAAVGGVAYAAGHHSATKSAEQQQTDAQQNA
Ga0070697_1021425381	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLRRRVVGRAVVRTAAVGGVAYAAGHHVAAKSAQQQQMDAQQNAQISD
Ga0066702_100179334	3300005575	Soil	VVGRAVVRTAAVGGVAYAAGHHMATKSAQQAQTALLS*
Ga0066654_107486482	3300005587	Soil	MLRRRVVRRAVVRTAVVGGTAYAVGHHAATKSAEQQQMDAQQNA
Ga0070717_113794782	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLIRRRPLLRAAAVGGVAYAAGHHSATKSAEQQQMDD
Ga0066656_103417821	3300006034	Soil	MLRRRVVGRAVVRTAVVGGTAYAVGHHAATKSAQQQQMD
Ga0066656_103615252	3300006034	Soil	MFRRRRRPLLRTAAVGGVAYAAGHHGGKKSAEQQY
Ga0066652_1020280261	3300006046	Soil	MLRRRVVRRAVVRTAVVGGTAYAVGHHAATKSAQQQQM
Ga0075028_1004565972	3300006050	Watersheds	MMRRRMVGRRLVRTAAVGGVAYAAGHHTAKKSAEQQ
Ga0075017_1010451241	3300006059	Watersheds	MLRRRVVRRAVVRTAVVGGTAYAVGHHAANKSAQQQQTDAQQDAQIAD
Ga0075018_103674381	3300006172	Watersheds	MMRRRMVGRRLVRTAAVGGVAYAAGHHTAKKSAEQQQTDAQQ
Ga0066658_107915022	3300006794	Soil	MFRPGAIVRRRVVGRAVVRTAVVGGEADGVGHHMATKSAQQAQMDAQQN
Ga0066665_103163813	3300006796	Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQYTDAQQSAQ
Ga0066660_108394992	3300006800	Soil	MIGRRMIRRRVVGRAVVRTAAVGGVAYAAGHHMATKSAEQQY
Ga0066660_113280462	3300006800	Soil	MLRRRVVRRAVVRTAVVGGTAYAVGHHAATKSAQQQQ
Ga0066660_116592762	3300006800	Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQSTDAQQ
Ga0066710_1032858312	3300009012	Grasslands Soil	MLRRRVVGRAVVRTAVVGGTAYAVGHHAATKSAQQQQMDAQQNAQIED
Ga0099828_113768921	3300009089	Vadose Zone Soil	MMRRRIRRRAIVGTAAVAGGAYAVGHHHATKSAEQQQTDAQQNAQI
Ga0066709_1015723352	3300009137	Grasslands Soil	MLRRRVVGRAVVRTAVVGGTAYAVGHHAATKSAQQQQMDAQ
Ga0116221_11602081	3300009523	Peatlands Soil	VRTAVVGGTAYAVGHHSATKSAEQQQMDAQQNAQIADVQDQQA
Ga0116215_13441361	3300009672	Peatlands Soil	MRRAVVRTAVVGGTAYAVGHHSATKSAEQQQMDAQQNAQIA
Ga0127462_1297992	3300010061	Grasslands Soil	MRRRAIVGTAVVGGAAYAAGHHMATKSAEQQQMDAQQNAQIADVQDQ
Ga0127439_1327862	3300010074	Grasslands Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQYTDAQQSA
Ga0127430_1519372	3300010076	Grasslands Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQYTDAQQS
Ga0127445_10673911	3300010085	Grasslands Soil	MLRRRRPLLRAAAVGGVAYAAGHHMATKAAEQQSMDAQQSAQID
Ga0127492_10275022	3300010087	Grasslands Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQYTD
Ga0127481_10139631	3300010101	Grasslands Soil	MLRRRPLLRAAAVGGVAYSAGHHMATKSAEQQNTDAQ
Ga0127470_10214102	3300010105	Grasslands Soil	MMARRMVRRRVVGRAVVRTAVVGGTAYAVGHHAATKSAQQ
Ga0127458_10603812	3300010112	Grasslands Soil	MMRRRMRRRAIVGTAVVGGAAYAAGHHSATKSAEQQQ
Ga0127466_11483362	3300010116	Grasslands Soil	MLRRRRPLLRTAAVGGVAYAAGHHMATKSAAQQQQEA
Ga0127488_10470492	3300010122	Grasslands Soil	MRRRAIVGTAVVGGAAYAAGHHMATKSAEQQQMDAQQNAQTLTCRISKQ
Ga0127482_10135671	3300010126	Grasslands Soil	MLRRRRPLLRAAAVGGVAYSAGHHMATKAAEQQSM
Ga0127484_10919532	3300010134	Grasslands Soil	MRRRAIVGTAVVGGAAYAAGHHRATKSAEQQQPDAQQDAQIADVQD
Ga0127447_11322911	3300010136	Grasslands Soil	MRRRAIVGTAVVGGAAYAAGHHSATKAAEQQQMDAQ
Ga0127464_10237692	3300010139	Grasslands Soil	MRRAVVRTAVVGGTAYAVGHHAATKSAQQQQTDAQQN
Ga0127464_10687661	3300010139	Grasslands Soil	VVRTAVVGGVAYGVGHHMATKSAQQQQMDAQQNAQID
Ga0134070_102373153	3300010301	Grasslands Soil	MLRRRPLLRAAAVGGVAYSAGHHMATKSAEQQYTDAQQ
Ga0134086_102103781	3300010323	Grasslands Soil	MLRRRPLLRAAAVGGVAYSAGHHMATKSAEQQYTDAQQSAQIE
Ga0134063_103472422	3300010335	Grasslands Soil	MRRAVVRTAVVGGTAYAVGHHAATKSAQQQQTDAQQNAQIADVQ
Ga0126370_121447852	3300010358	Tropical Forest Soil	MVARRAVGRAVVRTAVVGGTAYAVGHHAATKSAEQQYM
Ga0126372_100997921	3300010360	Tropical Forest Soil	MVARRVVGRSVVRTAAVGGVAYAAGHHMAKKSAEQQYMD
Ga0126383_121317342	3300010398	Tropical Forest Soil	MVRRRVVGRAVVRTAVVGGTAYAVGHHAATKSAEQQYTDAQQNAQIED
Ga0150983_155705901	3300011120	Forest Soil	MRRAVVRTAVVGGTAYAVGHHAATKSAEQQQMDAQQNA
Ga0137364_102916213	3300012198	Vadose Zone Soil	MMMRRRMRRRAIVGTAVVGGTAYAVGHHSATKSAEQQ
Ga0137364_105024303	3300012198	Vadose Zone Soil	MFRRRRPLLRAAAVGGVAYAAGHHVATKSAEQQYTDAQQNA
Ga0137364_106360921	3300012198	Vadose Zone Soil	MRRRAIVGTAVVGGAAYAAGHHSATKSAEQQQMDAQ
Ga0137383_106568851	3300012199	Vadose Zone Soil	MMRRRAIVGTAVVGGAAYAAGHHSATKSAEQQQMDA
Ga0137382_101149781	3300012200	Vadose Zone Soil	MFRRRRPLLRAGAGGGVVYAAGHHVAKKSAEQQNTDAQQNAQI
Ga0137365_101635215	3300012201	Vadose Zone Soil	MLRRRRPLLRTAAVGGVAYAAGHHMATKSAQQQQMDAQQN
Ga0137380_107347892	3300012206	Vadose Zone Soil	MRRRAIVGTAVVGGAAYAAGHHSATKSAEQQQTDAQ
Ga0137381_106912853	3300012207	Vadose Zone Soil	MRRRAIVGTAVVGGAAYAAGHHSATKSAEQQQTDAQQNAQIADVQD
Ga0137381_110678102	3300012207	Vadose Zone Soil	MFRRRRPLLRAAAVGGVAYAAGHHVATKSAEQQNTDAQQNAQ
Ga0137379_109119992	3300012209	Vadose Zone Soil	MLRRRVVGRAVVRTAAVGGVAYAAGHHVATKSAEQQYTDAQ
Ga0134028_10334983	3300012224	Grasslands Soil	MLRRRPLLRAAAVGGVAYSAGHHMATKSAEQQSTDAQQS
Ga0137387_107422351	3300012349	Vadose Zone Soil	MLRRRRLLRTAAVGGVAYAAGHHKATKSAEQQQQE
Ga0137384_113380921	3300012357	Vadose Zone Soil	MMRRRMRRRAIVGTAVVGGAAYAAGHHSATKSAEQQ
Ga0137385_104071981	3300012359	Vadose Zone Soil	MLRRRRPLLRTAAVGGVAYAAGHHMATKSAAQQQQEADQNAQIADL
Ga0137361_109246142	3300012362	Vadose Zone Soil	MFRRRRPILRTAVVGGAAYMAGSHVAGKSAEQAQQEA
Ga0137390_104939333	3300012363	Vadose Zone Soil	MMRRRVMRRAVVRTAVVGGTAYAVGHHAATKSAQQQQTDAQQNA
Ga0134037_10226993	3300012372	Grasslands Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQYTDAQQ
Ga0134026_10086772	3300012381	Grasslands Soil	MLRRRVVGRAVVRTAAVGGVAYAAGHHVATKSAQQTQMDAQQNA
Ga0134036_10590881	3300012384	Grasslands Soil	MRRRAIVGTAVVGGAAYAAGHHSASKSAEQQQMDAQQN
Ga0134044_13225822	3300012395	Grasslands Soil	MLRRRVVGRAVVRTAAVGGVAYAAGHHVATKSAQQTQMDAQQN
Ga0134051_12659271	3300012398	Grasslands Soil	MRRRAIVGIAVVGGAAYAAGHHMATKSAEQQQMDAQQNAQI
Ga0134041_10374071	3300012405	Grasslands Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQYTDAQQSAQI
Ga0134045_11317852	3300012409	Grasslands Soil	MRRRAIVGTAVVGGAAYAAGHHMATKSAEQQQMDA
Ga0137395_101936841	3300012917	Vadose Zone Soil	MLRRRVVRRAVVRTAVVGGTAYAVGHHAATKSAQQQQTD
Ga0126369_112420741	3300012971	Tropical Forest Soil	MMARRMVARRAVGRSVVRTAVVGGTAYAVGHHAATKS
Ga0182033_116234312	3300016319	Soil	MMARRMVRRRVVGRAVVRTAVVGGTAYAVGHHAATKSAEQQQMDAQQNA
Ga0187812_11495501	3300017821	Freshwater Sediment	MFRRRLLRTAVVGGVAYGVGHHMATKSAQQQQTDAQQNAQI
Ga0187818_102942582	3300017823	Freshwater Sediment	MLRRRRPLLRTAVVGGVAYAAGSHVASKSAEQAQMEAQQNAQIADLQQQAAAA
Ga0187818_104883302	3300017823	Freshwater Sediment	MMRRRVMRRAVVRTAVVGGTAYAVGHHSATKSAEQQQMD
Ga0187806_12094811	3300017928	Freshwater Sediment	MFRRRRPLLRTAAVGGVAYAAGHHGGKKSAEQQNTDAQQNAQISD
Ga0187814_104344492	3300017932	Freshwater Sediment	MFRRRRRPLLRTAAVGGVAYAAGHHGGKKSAEQQNTDAQQ
Ga0187817_109257021	3300017955	Freshwater Sediment	MFRRRRPLLRTAAVGGVAYAAGHHGGKKSAEQQNTDAQQNAQISDLQQQ
Ga0187778_112960312	3300017961	Tropical Peatland	MMRRRRPLLRTAALAGGAAAVGHHMGKKSEQRQEQE
Ga0187815_104006932	3300018001	Freshwater Sediment	MFMRRRMRRRAIVGTAVVGGAAYAAGHHTATKSAQQQQTDAQQNAQIAD
Ga0066655_110418951	3300018431	Grasslands Soil	MFRRRRPLLRAAAVGGVAYAAGHHVATKSAEQQYTDEQQNAQISD
Ga0066667_122441991	3300018433	Grasslands Soil	MLRRRVVGRAVVRTAVVGGTAYAVGHHAATKSAQQQQMDAQQNAQI
Ga0066662_108716001	3300018468	Grasslands Soil	MVGRRMVRRRVVGRAVVRTAAVGGVAYAAGHHMATKSA
Ga0066662_129536751	3300018468	Grasslands Soil	MFRRRRPLLRAAAVGGVAYAAGHHVATKSAEQQYTD
Ga0066669_108397401	3300018482	Grasslands Soil	MFRRRRPLLRAAAVGGVAYAAGHHVATKSAEQQYTDAQ
Ga0197907_103180912	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MFRRRPILRTAMVGGVAYAAGSHGARKSAEQDQLEAQQNA
Ga0210408_108280032	3300021178	Soil	MFRRRRRPLLRTAAVGGLAYAAGHHGGTKSAEQQYTDEQQNAQI
Ga0187846_100559631	3300021476	Biofilm	MLARRMVRRRVVGRAVVRTAAVGGVAYAAGHHVAKKSAEQQYMDEQQNAQIADMQQQ
Ga0210409_109162671	3300021559	Soil	MFRRRRRPLLRTAAVGGLAYAAGHHGGTKSAEQQYTDEQQNAQIA
Ga0210409_110598772	3300021559	Soil	MLRRRVMRRAVVRTAVVGGTAYAVGHHAATKSAEQQQMDAQQNAQIADV
Ga0242662_101599702	3300022533	Soil	MLRRRVVRRAVVRTAVVGGTAYAVGHHSATKSAQQQQ
Ga0207700_117213512	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLARRMVRRRVVGRAVVRTAAVGGVAYAAGHHMATKSAEQQQMD
Ga0207698_121137841	3300026142	Corn Rhizosphere	MRMRPRVGRRLVRTAAVGGAAYMVGSHAATKSAEQQQQEA
Ga0209238_10361011	3300026301	Grasslands Soil	MLRRRVVGRAVVRTAAVGGVAYAAGHHVATKSAQQT
Ga0209238_10420663	3300026301	Grasslands Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQSTDAQQSAQ
Ga0209265_11273652	3300026308	Soil	MVGRRMVRRRVVGRAVVRTAAVGGVAYAAGHHMATKSAEQAQMDAQQSAQIE
Ga0209473_12093521	3300026330	Soil	MLRRRRPLLRAAAVGGVAYAAGHHSATKSAEQQYTDAQQSAQIADLQQQ
Ga0209267_10379373	3300026331	Soil	MLRRRRPLLRAAAVGGVAYAAGHHVATKSAEQQYT
Ga0209161_104181862	3300026548	Soil	MLRRRVVGRAVVRTAAVGGVAYAAGHHVATKSAQQ
Ga0209577_104076682	3300026552	Soil	MMRRRMRRRAIVGTAVVGGAAYAAGHHSATKSAEQQQMDAQQ
Ga0209577_105925111	3300026552	Soil	MIGRRMIRRRVVGRAVVRTAAVGGVAYAAGHHMATKSAEQ
Ga0209283_109412991	3300027875	Vadose Zone Soil	MMRRRIRRRAIVGTAAVAGGAYAVGHHHATKSAEQQQTDAQQN
Ga0209048_105088361	3300027902	Freshwater Lake Sediment	MMMRRRIRRRAIVGTAVVGGAAYAAGHHSASKSAQQQQTD
Ga0209069_104877511	3300027915	Watersheds	MMRRRIRRRAIVGTAVVAGGAYAVGHHSATKSAEQQQTDAQQNAQIADVQD
Ga0222749_102002271	3300029636	Soil	MMRRRVMRRAVVRTAVVGGTAYAVGHHAATKSAEQQQMDAQQNAQIADVQDQQ
Ga0222749_107643612	3300029636	Soil	MRRAVVRTAVVGGTAYAVGHHAATKSAEQQQMDAQQNAQIADVQDQQ
Ga0265462_114534622	3300030738	Soil	MMRRRIRRRAIVGTAVVAGGAYAVGHHSATKSAQQQQTDAQQNAQIADVQDQ
Ga0170824_1215461982	3300031231	Forest Soil	MLRRRVMRRAVVRTAVVGGTAYAVGHHAAKKSAQQQQ
Ga0318574_101751553	3300031680	Soil	MFRRRRPLLRAAAVGGTAYVAGKHMANKQAEQQYTDEDQEAR
Ga0318535_100994323	3300031764	Soil	MFRRRRPLLRAAAVGGTAYVAGKHMANKQAEQQYTDEDQEARLSALE
Ga0318509_105024462	3300031768	Soil	MFARRRPLLRAAAVGGTAYVAGKHMANKQAEQQYTDEDQEARLS
Ga0318546_109788842	3300031771	Soil	MFARRRPLLRAAAVGGTAYVAGRHMANKQAEQQYTDEDQEAR
Ga0318568_110496991	3300031819	Soil	MFRRRRPLLRAAAVGGTAYVAGKHMANKQAEQQYTDEDQE
Ga0318531_101934913	3300031981	Soil	MFARRRPLLRAAAVGGTAYVAGRHMANKQAEQQYTDEDQEARLSALE
Ga0335085_107964022	3300032770	Soil	MFMRRRMRRRAIVGAAVVGGTAYAAGHHVAKKSAEQQQTDAQQNAQIADVQQQ
Ga0326726_110550812	3300033433	Peat Soil	MLRRRRPLLRTAAVGGVAYAAGHHMATKSAAQQQQEADQNAQI
Ga0314865_194867_3_137	3300033806	Peatland	MLLRRRMRRRAIIGTAIVGGTAYAAGHHMATKSAEQQSTDAQQNA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073973

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign