Metagenome / Metatranscriptome Family F070275

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070275
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	119 residues
Representative Sequence	MRSWNAPLVFVVAMAVAVAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYD
Number of Associated Samples	103
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.21 %
% of genes near scaffold ends (potentially truncated)	91.06 %
% of genes from short scaffolds (< 2000 bps)	83.74 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.033 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.634 % of family members)
Environment Ontology (ENVO)	Unclassified (32.520 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.033 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 18.88% β-sheet: 16.08% Coil/Unstructured: 65.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF00069	Pkinase	4.88
PF13646	HEAT_2	4.07
PF01546	Peptidase_M20	3.25
PF12867	DinB_2	3.25
PF03551	PadR	1.63
PF00005	ABC_tran	1.63
PF01075	Glyco_transf_9	1.63
PF08281	Sigma70_r4_2	0.81
PF00155	Aminotran_1_2	0.81
PF00535	Glycos_transf_2	0.81
PF13565	HTH_32	0.81
PF11075	DUF2780	0.81
PF00355	Rieske	0.81
PF01408	GFO_IDH_MocA	0.81
PF13692	Glyco_trans_1_4	0.81
PF01212	Beta_elim_lyase	0.81
PF08662	eIF2A	0.81
PF07676	PD40	0.81
PF13450	NAD_binding_8	0.81
PF00753	Lactamase_B	0.81
PF02687	FtsX	0.81
PF12704	MacB_PCD	0.81
PF07883	Cupin_2	0.81
PF06679	DUF1180	0.81
PF06826	Asp-Al_Ex	0.81
PF13193	AMP-binding_C	0.81
PF06439	3keto-disac_hyd	0.81
PF08543	Phos_pyr_kin	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	19.51
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	1.63
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	1.63
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.63
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.63
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.63
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.81
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.81
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.81
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.81
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	0.81
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.81
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.81
COG0524	Sugar or nucleoside kinase, ribokinase family	Carbohydrate transport and metabolism [G]	0.81
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.81
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	0.81
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.81
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.81
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.81
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.81
COG2240	Pyridoxal/pyridoxine/pyridoxamine kinase	Coenzyme transport and metabolism [H]	0.81
COG2870	ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.81
COG2985	Uncharacterized membrane protein YbjL, putative transporter	General function prediction only [R]	0.81
COG3033	Tryptophanase	Amino acid transport and metabolism [E]	0.81
COG4992	Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase	Amino acid transport and metabolism [E]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.03 %
Unclassified	root	N/A	47.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.03 %
Unclassified	root	N/A	47.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.03 %
Unclassified	root	N/A	47.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	13.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.44 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.01 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.32 %
Lentisphaerae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae	2.44 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	1.63 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.63 %
Candidatus Cloacimonetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.97 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.32 %
Lentisphaeria	class	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria	2.44 %
unclassified Candidatus Cloacimonetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes	1.63 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.63 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	1.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.97 %
Alphaproteobacteria bacterium 32-64-14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	13.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.32 %
Lentisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales	2.44 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	1.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.63 %
Cloacimonetes bacterium SCGC AAA252-N05	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Cloacimonetes bacterium SCGC AAA252-N05	1.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.97 %
Alphaproteobacteria bacterium 32-64-14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	13.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.32 %
Lentisphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae	2.44 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.63 %
Cloacimonetes bacterium SCGC AAA252-N05	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Cloacimonetes bacterium SCGC AAA252-N05	1.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.97 %
Alphaproteobacteria bacterium 32-64-14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	13.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.32 %
Lentisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae → Lentisphaera	2.44 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.63 %
Cloacimonetes bacterium SCGC AAA252-N05	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Cloacimonetes bacterium SCGC AAA252-N05	1.63 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.81 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.97 %
Alphaproteobacteria bacterium 32-64-14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	13.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.32 %
Lentisphaera araneosa	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae → Lentisphaera → Lentisphaera araneosa	2.44 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.63 %
Cloacimonetes bacterium SCGC AAA252-N05	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Cloacimonetes bacterium SCGC AAA252-N05	1.63 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	0.81 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_10770561	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300000891\|JGI10214J12806_11557219	Not Available	599	Open in IMG/M
3300000956\|JGI10216J12902_101162738	All Organisms → cellular organisms → Bacteria	5235	Open in IMG/M
3300000956\|JGI10216J12902_102228947	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300000956\|JGI10216J12902_106155200	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300000956\|JGI10216J12902_106352866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	684	Open in IMG/M
3300001305\|C688J14111_10204781	Not Available	613	Open in IMG/M
3300001475\|JGI12361J15250_1005611	Not Available	675	Open in IMG/M
3300004114\|Ga0062593_101879107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	661	Open in IMG/M
3300004114\|Ga0062593_102601931	Not Available	575	Open in IMG/M
3300004156\|Ga0062589_100153607	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300004156\|Ga0062589_102152851	Not Available	570	Open in IMG/M
3300004156\|Ga0062589_102851427	Not Available	505	Open in IMG/M
3300004266\|Ga0055457_10040282	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300004463\|Ga0063356_100094500	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3218	Open in IMG/M
3300004463\|Ga0063356_105626873	Not Available	538	Open in IMG/M
3300004479\|Ga0062595_100363502	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300004480\|Ga0062592_100624748	Not Available	921	Open in IMG/M
3300004643\|Ga0062591_101523347	Not Available	670	Open in IMG/M
3300005093\|Ga0062594_101005690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300005293\|Ga0065715_11011150	Not Available	542	Open in IMG/M
3300005295\|Ga0065707_10397705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	856	Open in IMG/M
3300005328\|Ga0070676_10654523	Not Available	763	Open in IMG/M
3300005333\|Ga0070677_10159240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	1058	Open in IMG/M
3300005334\|Ga0068869_101759382	Not Available	554	Open in IMG/M
3300005340\|Ga0070689_100135860	All Organisms → cellular organisms → Bacteria	1974	Open in IMG/M
3300005354\|Ga0070675_101916449	Not Available	547	Open in IMG/M
3300005365\|Ga0070688_100891131	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005438\|Ga0070701_11311575	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Cloacimonetes bacterium SCGC AAA252-N05	518	Open in IMG/M
3300005440\|Ga0070705_101078041	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Cloacimonetes bacterium SCGC AAA252-N05	656	Open in IMG/M
3300005456\|Ga0070678_100921562	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005456\|Ga0070678_101511329	Not Available	629	Open in IMG/M
3300005457\|Ga0070662_101102451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	681	Open in IMG/M
3300005535\|Ga0070684_101842706	Not Available	571	Open in IMG/M
3300005543\|Ga0070672_101907246	Not Available	535	Open in IMG/M
3300005544\|Ga0070686_100400488	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300005564\|Ga0070664_102195402	Not Available	524	Open in IMG/M
3300005617\|Ga0068859_102434322	Not Available	577	Open in IMG/M
3300005719\|Ga0068861_100116690	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300005764\|Ga0066903_103862938	Not Available	805	Open in IMG/M
3300005842\|Ga0068858_100618339	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300006196\|Ga0075422_10578704	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae → Lentisphaera → Lentisphaera araneosa	518	Open in IMG/M
3300006237\|Ga0097621_100786251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	881	Open in IMG/M
3300006581\|Ga0074048_10010374	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300006844\|Ga0075428_101386523	Not Available	738	Open in IMG/M
3300006847\|Ga0075431_102207404	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae → Lentisphaera → Lentisphaera araneosa	505	Open in IMG/M
3300006853\|Ga0075420_101503746	Not Available	577	Open in IMG/M
3300006854\|Ga0075425_100277199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1930	Open in IMG/M
3300006880\|Ga0075429_101029760	Not Available	719	Open in IMG/M
3300006881\|Ga0068865_101867438	Not Available	544	Open in IMG/M
3300006904\|Ga0075424_102258957	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae → Lentisphaera → Lentisphaera araneosa	572	Open in IMG/M
3300009100\|Ga0075418_11932893	Not Available	642	Open in IMG/M
3300009148\|Ga0105243_10206228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1728	Open in IMG/M
3300009177\|Ga0105248_10206651	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300010036\|Ga0126305_11012961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300010042\|Ga0126314_10911457	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300010397\|Ga0134124_12020529	Not Available	614	Open in IMG/M
3300010401\|Ga0134121_11063860	Not Available	799	Open in IMG/M
3300012212\|Ga0150985_108908659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1443	Open in IMG/M
3300012212\|Ga0150985_110536122	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300012892\|Ga0157294_10246823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	548	Open in IMG/M
3300012911\|Ga0157301_10235713	Not Available	635	Open in IMG/M
3300012916\|Ga0157310_10028129	All Organisms → cellular organisms → Bacteria → Acidobacteria	1510	Open in IMG/M
3300012916\|Ga0157310_10545669	Not Available	513	Open in IMG/M
3300012955\|Ga0164298_10895190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	645	Open in IMG/M
3300012957\|Ga0164303_10286122	All Organisms → cellular organisms → Bacteria → Acidobacteria	964	Open in IMG/M
3300012960\|Ga0164301_11114003	Not Available	628	Open in IMG/M
3300012989\|Ga0164305_11266605	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	642	Open in IMG/M
3300014325\|Ga0163163_13026393	Not Available	524	Open in IMG/M
3300015077\|Ga0173483_10981583	Not Available	505	Open in IMG/M
3300015371\|Ga0132258_11836424	All Organisms → cellular organisms → Bacteria	1527	Open in IMG/M
3300015372\|Ga0132256_102385962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	632	Open in IMG/M
3300015372\|Ga0132256_103720407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	513	Open in IMG/M
3300015373\|Ga0132257_100092879	All Organisms → cellular organisms → Bacteria	3459	Open in IMG/M
3300015373\|Ga0132257_100147585	Not Available	2752	Open in IMG/M
3300015373\|Ga0132257_103667653	Not Available	559	Open in IMG/M
3300015374\|Ga0132255_100530414	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300015374\|Ga0132255_101349383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	1076	Open in IMG/M
3300017965\|Ga0190266_10563312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300018073\|Ga0184624_10470761	Not Available	549	Open in IMG/M
3300018469\|Ga0190270_12581593	Not Available	570	Open in IMG/M
3300018476\|Ga0190274_10108978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2227	Open in IMG/M
3300018476\|Ga0190274_11554830	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300018481\|Ga0190271_10690669	All Organisms → cellular organisms → Bacteria → Proteobacteria	1143	Open in IMG/M
3300019377\|Ga0190264_12176793	Not Available	516	Open in IMG/M
3300021081\|Ga0210379_10004340	All Organisms → cellular organisms → Bacteria → Acidobacteria	5179	Open in IMG/M
3300022756\|Ga0222622_11465423	Not Available	503	Open in IMG/M
3300025321\|Ga0207656_10300343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	795	Open in IMG/M
3300025925\|Ga0207650_10112504	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300025935\|Ga0207709_10346674	Not Available	1120	Open in IMG/M
3300025941\|Ga0207711_10605760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	1022	Open in IMG/M
3300026035\|Ga0207703_10212279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1726	Open in IMG/M
3300026089\|Ga0207648_11434856	Not Available	649	Open in IMG/M
3300026121\|Ga0207683_11656587	Not Available	589	Open in IMG/M
3300027395\|Ga0209996_1067224	Not Available	554	Open in IMG/M
3300027909\|Ga0209382_10435016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1456	Open in IMG/M
3300028587\|Ga0247828_10936994	Not Available	561	Open in IMG/M
3300028802\|Ga0307503_10267971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	842	Open in IMG/M
3300028803\|Ga0307281_10120292	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300028889\|Ga0247827_10685539	Not Available	666	Open in IMG/M
3300031538\|Ga0310888_10760891	Not Available	598	Open in IMG/M
3300031547\|Ga0310887_10804436	Not Available	590	Open in IMG/M
3300031847\|Ga0310907_10116697	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300031854\|Ga0310904_10119773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	1482	Open in IMG/M
3300031858\|Ga0310892_10153833	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300031892\|Ga0310893_10162258	Not Available	877	Open in IMG/M
3300031892\|Ga0310893_10468822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300031995\|Ga0307409_100269209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1568	Open in IMG/M
3300032003\|Ga0310897_10269512	Not Available	769	Open in IMG/M
3300032013\|Ga0310906_11363525	Not Available	519	Open in IMG/M
3300032074\|Ga0308173_10344234	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300032075\|Ga0310890_10831453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 32-64-14	733	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.72%
Host-Associated	Host-Associated	42.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.66%
Plants	Host-Associated → Plants	42.28%
Aquatic	Environmental → Aquatic	4.06%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.51%
Marine	Environmental → Aquatic → Marine	1.63%
Sediment	Environmental → Aquatic → Sediment	1.63%
Roots	Host-Associated → Plants → Roots	1.63%
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Peat	Environmental → Terrestrial → Peat	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.20%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.13%
Loam	Environmental → Terrestrial → Soil → Loam	7.32%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.32%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.20%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.63%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.13%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.25%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.44%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.44%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.63%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.63%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.81%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001475	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN102	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004266	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031605	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_107705611	3300000363	Soil	MRRCSKAMLVFVGAMTAPVLAQTAPDPARIAPGQTCAAITQANTDASAGTANINHDGTPLPGIPAPDIARGFSGIPRSAQPPLT
JGI10214J12806_115572192	3300000891	Soil	MRSWNAPLVFVVAMAVAAAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVP
JGI10216J12902_1011627384	3300000956	Soil	MRSWNALLVFVVALTVTPAYARRQVDPARVAPGHTCTAITQANADASAGTVNINHDGSPIPGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLVEANADIPYTLFVPSTYDPQK
JGI10216J12902_1022289472	3300000956	Soil	MRSLNPVLVFVLAAGVAPAYAQRAPDQPRPAPGHTCATVTQANADASAGTANINHDGTPIAGTPAPDISRGFKGIPRSAQPKLTASQQRILECTHRLAEANADLPYALFVPSTYDPQKPAPLVVDLHGLNITPLQQILF
JGI10216J12902_1038297603	3300000956	Soil	MIHRRAGWISGAWLLLAAPTAFAQLATPAQLAPGQNCAFVTQAHADASAGTPNINHDGSPLPGIPAPDISRGFQGIPRSAQPKLTASQQRILECTYRLAEADADMPYTLFIPSSYAPGKPAPLIVDLHGLNITPLQQMLFDGTT
JGI10216J12902_1061552001	3300000956	Soil	MRRVLKVSFGLAWAMTAVPAFAQGVPDAARIAPGQTCSVVTQANADASAGKANINHDGTPLAGIPAPDISRGFNGIPRSAQPPLTASQKRILECTYRLAEANAEMAYTLFVPSTYEAGKPAPLVVDLHGLNITPLQQMLFDGTTDLAERFGFIV
JGI10216J12902_1063528661	3300000956	Soil	MRSWNAWLVLVVALAVTPAYAQRPADPAPGAPGHTCTPITQAHADASAGTVNINHDGTPLPGTPAPDISRGFSGIPRSAQPKLTASQQRILECTHHLPEANADIPYTLFVPSTYDPRTPSPLVVDLHGLNITPLQQILFDG
C688J14111_102047811	3300001305	Soil	MRSWSALVIILCVVAAPARAQRAVDVPPGHTCTAITQANADASAGTVNINHDGTPIAGIPAPDISRGFSGIPRSAQPPLTASQHRILECTHHV
JGI12361J15250_10056111	3300001475	Soil	MRTWNALVVILVVAAAPARAQRAVDVPPGHTCTAITQANADASAGTVNIQHDGTPIPGIPAPDISRGFSGIPRSAQPPLTTSQQRILECTHHVAEANAESAYTLFVPS
Ga0062593_1000815863	3300004114	Soil	MRLWNALLVLVVVVAVPPAHAQRAGDPTRVVPGQTCTAITQASADASAGTVNIHHDGTPIAGTPAPDISRGFSGIPRSAQPRLT
Ga0062593_1018791071	3300004114	Soil	MRSWNTLLVVVVTLAVGPAHGQRAVDPARVAPGHTCTAITQADAEASAGTVNINHDGSPIPGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLAEANADIPYTLFVPSTYDPRKPAPLVVDLHGLNITPLQQILFDGTT
Ga0062593_1026019311	3300004114	Soil	MRSWNAPLVFVVAMAVAVAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQK
Ga0062589_1001536071	3300004156	Soil	MRSCQALSVLVVLAAVAPAYAQRGVDPPRIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRL
Ga0062589_1021528511	3300004156	Soil	MRSLKALLVCLVTVAPAYAQGAAAPPRVAAEQACTAVTQAHADESAGTVNINHDGTPIPGIPAPDISRGFSGIPRSAQPPLTASQRRILECAYHL
Ga0062589_1028514271	3300004156	Soil	MRSWNALLVLVVAVAVAPAHAQRAADPARVPPGHTCTAITQANADASAGTININHDGTPIAGTPAPDISRGFKGIPRSAQPRLTASQQRILECTHRLAEANTDIPYTLFVPSTYDPQKPA
Ga0055457_100402821	3300004266	Natural And Restored Wetlands	MRFQVTLIALSCTLTAASAFGQTLDPTRLAPGQTCTMITQASADASAGTTNINHDGTPRAGVSAPDISQGFRGIPRSPQPRLSSSQQRILECTYHSAEANADMGYTLFIPTSYDPTTPNALVVDLHGLAITPLQ
Ga0063356_1000945001	3300004463	Arabidopsis Thaliana Rhizosphere	MRLWNALLVSVVVVAVPPAHAQRAGDPTRVAPGQTCTAITQAHADASAGTVNIHHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRVAE
Ga0063356_1056268732	3300004463	Arabidopsis Thaliana Rhizosphere	MRSWNAPLVFVVAMAVAAAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANA
Ga0062595_1003635023	3300004479	Soil	MRSWNALFVFVVAVAVAPAPAQRAVDPARVAPGHTCTAITQANADASAGTVNINHDGTPIAGTPVPDISRGFSGIPRSAQPRLTASQQRILECTHR
Ga0062592_1006247482	3300004480	Soil	MRSLNALLVVVVAVAVTPASAQRAVDPARVAPGHTCTAITPANADASAGTVNINHDGTPIAGTPAPDISRGFKGIPRSAQPRLTSSQQRILECTHRLAEANADMPYTLFVPSTYDP
Ga0062591_1015233472	3300004643	Soil	MRSWNAPLVFVVAMAVAVAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYD
Ga0062594_1010056902	3300005093	Soil	MRSLKALLVCLVTVAPAYAQGAAAPPRVAAEQACTAVTQAHADESAGTVNINHDGTPIPGIPAPDISRGFSGIPRSAQPPLTASQRRILECAYHLAEANADLAYALFVPSTYDPQKPAPLVV
Ga0065715_110111501	3300005293	Miscanthus Rhizosphere	LKQSWNALLALVVLLAAPAYAQRAVDPARVAPGQTCTAITQAHADASAGTVNIQHDGTPIAGTTAPDISRGFSGIPRSAQPPLTASQQRILECTHRVNEANADIPYAL
Ga0065707_103977052	3300005295	Switchgrass Rhizosphere	VIRMWKTSLLLCALSLTATSLFAQRGPDPAQLAPGQTCKPVTQANADASAGTANINHDGTALLGTPAPDISRGFNGIPRSAQPKLTPSQQRILECTYHLAEANADMPYTLFVPSTYAPNKPMPLVVDLHGLSITPLQQILFDGTTDFAER
Ga0070676_106545231	3300005328	Miscanthus Rhizosphere	MRSWNAPLVFVVAMAVAAAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEAN
Ga0070677_101592401	3300005333	Miscanthus Rhizosphere	MRSSKALCVFVALAAVAPAYARRVVDPPRIAPRPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRHLAEANADIPYALFVPSTYDPQKPAALVVDLHGLNITPLQQILFDGTTDFAERY
Ga0068869_1017593822	3300005334	Miscanthus Rhizosphere	MRSWNTLLVVVVTLAVGPAHGQRAVDPARVAPGHTCTAITQADAEASAGTVNINHDGSPIPGTPAPDISRGFSGIPRSAQPRLTPSQQRILECTHRLAEANADIPYTLFVPS
Ga0070689_1001358601	3300005340	Switchgrass Rhizosphere	MRSCKGLLAFVVLALVAAAPAYAQRGVGPPPIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLAEANADMPYALF
Ga0070675_1019164491	3300005354	Miscanthus Rhizosphere	MRSWNAPLVFVVAMAVAAAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECT
Ga0070688_1008911312	3300005365	Switchgrass Rhizosphere	MVMRSLNALLVCLVGVAPAYAQRAAAPPRVAAEQACTAVTQAHADESAGTVNINHDGTPIPGIPAPDISRGFSGIPRSAQPPLTASQRRILECAYHLPEANADLPYALFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDGT
Ga0070701_113115751	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MRSSKALCVFVALAAVAPAYARRGVDPPRIAPRPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRHLAEANADIPYALFVPSTYDPQKPAALVVDLHGLNITPLQQILFDGTTDFAERY
Ga0070705_1010780411	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRSCKGLLTFVVLALVAAAPAYAQRGVDPPRIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLAEANADMPYALFVPSTYDPQKPAPLVVDLHGLNITPLQQMLFD
Ga0070678_1009215621	3300005456	Miscanthus Rhizosphere	MMRLWNAPLILVMAVAAAPAYAQRAVDPTRVAPGHTCAAITQANADASAGTVNINHDGTPIPGTPAPDISRGFKGIPRSAQPRLTASQQRILECTHRVAEANADTPYTLFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDGTTDF
Ga0070678_1015113291	3300005456	Miscanthus Rhizosphere	VIRSCKGLLAFVVLALVAAAPAYAQRGVGPPPIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLAEANADMPYALFVPSTYDPQKPAPLVV
Ga0070662_1011024511	3300005457	Corn Rhizosphere	MRSWNAPLVFVVAMAVAAAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDGT
Ga0068867_1011560841	3300005459	Miscanthus Rhizosphere	MWLLLAAATVSAQLATPAQLAPGQNCAFVTQAHADASAGTANVNHDGSALPGIPAPDISRSFQGIPRSAQPRLTASQQRVLECTYHFAEADADMPYALFIPSTYVPGKPAPLIVDLHGLNITPLMQMLFDGT
Ga0070684_1018427061	3300005535	Corn Rhizosphere	MRSWNTLLVVVVTLAVGPAHGQRAVDPARVVPGQTCTAITQADADASAGTVNINHDGSPIPGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQK
Ga0070672_1019072462	3300005543	Miscanthus Rhizosphere	MRSWNAPLVFVVAMAVAVAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPPLTASQQRI
Ga0070686_1004004881	3300005544	Switchgrass Rhizosphere	MTRTRVDNRRTQAQALQMRSWRARLVVLVVTVAVVPASAQRAVDPARVAPRQTCTAITQANADASAGTVNINHDGTPIAGIPAPDISRGFSGIPRSAQPRLTASQLRILECTHRLSEANVDLPYTLFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDGTT
Ga0070664_1021954022	3300005564	Corn Rhizosphere	MRSCKGLLTFVVLALVAAAPAYAQRGVDPPRIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLAEANADMPYALFVPSTYDPQKPAALVVDLHGLNI
Ga0068859_1024343221	3300005617	Switchgrass Rhizosphere	MRSWNAPLVFVVAMAVAAAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRVAEANADI
Ga0068864_1016172881	3300005618	Switchgrass Rhizosphere	MGLRRRNARTKNELAHDSGAAVIMAGMTQRHTWISGATLLLAATTAFAQSATPADLAPGQHCALVTPAHADASAGTPNVNHDGSPLPGIPAPDISRGFQGIPRSAQPRLTASQQRILECTYRFAEADADMPYVLFIPSTYVAGKPAPLIVDLHGLNITPLMQM
Ga0068861_1001166902	3300005719	Switchgrass Rhizosphere	MRSWNAWLVLVVAVAPAAAQRAGDPPRTAAGHTCTAVTQANADASAGTVNINHDGTPIPGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPY
Ga0066903_1038629381	3300005764	Tropical Forest Soil	MMMWLLVVAAQAVVQGATPAQLAPGQTCAFVTQAHANDSAGTANVNHDGSPLPGVPAPDISRGFQGIPRSAQPPLTPPQQRILECTYHLAEADADMPYALFVPSTYTPGRPAPLIVDLHGLNITPLMQMLFDGTT
Ga0068858_1006183392	3300005842	Switchgrass Rhizosphere	MRSCKGLLAFVVLALVAAAPAYAQRGVGPPPIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTR
Ga0075422_105787041	3300006196	Populus Rhizosphere	MRSLNARLVLVAAVAVTPVFAQRAVDPARVAPGLTCTAITQANADASAGTVNINHDGTPIAGTPVPDISRGFDGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDG
Ga0097621_1007862511	3300006237	Miscanthus Rhizosphere	MRSCKGLLAFVVLALVAAAPAYAQRGVGPPPIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRHLAEANADIPYALFVPSTYDPQKPAALVVDLHGLNITPLQQILFDGTTDFAE
Ga0074048_100103741	3300006581	Soil	MMRSWNALLVLVAAVALAPGYPQRAVDSARVAPGQTCTAITQANADASAGTVNVHHDGTPIAGTPAPDISRGFSGIPRSPQPPLTASQQRILECTHRLAEANADLPYTLFVPSTYDSQKPAPLVVDLHGLNITPLQQILFDG
Ga0075428_1013865231	3300006844	Populus Rhizosphere	MRSWNALLVMVMAVAGAPAYAQHAVDPARAPAGHTCTAITQANADASAGTVNIQHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLAEANADIPYALFVPSTYDPQKPAPLVVDLHGLNITPLQQ
Ga0075431_1022074041	3300006847	Populus Rhizosphere	MRCWNARLVLAVAVAAAPASAQRGVDPARLPPGHTCTAITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTYQLAEANADIPYTLFVPTTYDPRKPAPLVVDLHGLNITPLQQILFDGT
Ga0075420_1015037461	3300006853	Populus Rhizosphere	VIRSCNALLVLFVAVAVAPVYAQRPVDPARVAPGQTCIAITQASADASAGTINIQHDGAPIAGVAAPDISRGFSGIPRSAQPRLTPSQQRILECTHRLAEAN
Ga0075425_1002771991	3300006854	Populus Rhizosphere	MRSCKGLLAFVVLALVAAAPAYAQRGVGPPPIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLAEANADMPYALFVPSTYDPQKPAPLVVDL
Ga0075429_1010297602	3300006880	Populus Rhizosphere	MRSWNAPLVFVVAMAVAAAYAQRAAYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPS
Ga0068865_1018674382	3300006881	Miscanthus Rhizosphere	MRSWNALLVLVVAVAVAPDYAQRAVDPARVAPGQTCTAITQANADASAGTVNVHHDGTPIAGTPAPDISRGFSGIPRSAQPPLTASQQRIFECTHRLAEANADIPYTLFVPS
Ga0075424_1022589571	3300006904	Populus Rhizosphere	MRRRWYRWLPGMLLLVSTHAAAQADADPARLAPGQTCALVTQAHADASAGTPNVNHDGSALAGIPAPDISRGFQGIPRSAQPPLTPSQRRILECSYRLAEANADMAYALFIPSGYRQGRPAPLIMDLHGLNITPLMQMLFDGTTDL
Ga0075418_119328931	3300009100	Populus Rhizosphere	MRSWNALLVMVMAVAGAPAYAQHAVDPARVPAGHTCTAITQANADASAGTVNIQHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTRRL
Ga0105243_102062282	3300009148	Miscanthus Rhizosphere	MMRSWNALLVFVVTVALAPGHPQRAADSARVAPGQSCTAITQANADASAGTVNINHDGTPIAGIPAPDISRGFSGIPRSAQPRLTASQLRILECTHRLSEANVDLPYTLFVPSTYDPQKPAPL
Ga0105248_102066513	3300009177	Switchgrass Rhizosphere	MRSSKALCVFVALAAVAPAYARRGVDPPRIAPRPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTR
Ga0126305_110129612	3300010036	Serpentine Soil	VKQTRNALLALVVALLAAPAYAQRSVDPARVAPGRTCTAITQAHADASAGTVNIQHDGTPIAGTTAPDISRGFSGIPRSAQPPLTASQQRILEC
Ga0126314_109114571	3300010042	Serpentine Soil	VKQTRNALLALVVALLAAPAYAQRSVDPARVATGQTCTAITQAHADASAGTVNVQHDGTPIAGTTPPDISRGFSGIPRSAQPPLTASQQRILE
Ga0134124_120205292	3300010397	Terrestrial Soil	MRSSKALSVFVALAAVAPAYARRGVDPPRIAPRPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLA
Ga0134121_110638601	3300010401	Terrestrial Soil	MRSCKGLLTFVVLALVAAAPAYAQRGVDPPRIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRL
Ga0150985_1089086591	3300012212	Avena Fatua Rhizosphere	MRSWSALVIILCVVAAPARAQRAVDVPPGHTCTAITQANADASAGTVNINHDGTPIAGIPAPDISRGFSGIPRSAQPPLTASQQRILECTHHVAEAN
Ga0150985_1105361222	3300012212	Avena Fatua Rhizosphere	VNFRSANSMKTVEWPLLFEKKGKGPVMRSWNALIAVGVAVTVTSFHPQRAVDSAAVRSGPTCTVITQAHADASAGTANINHDGTAIPGIAAPDISRGFKGIPRSAQPPLTASQQHILECTHHIPEANAETPYALFVPTSYDPQKPA
Ga0157294_102468231	3300012892	Soil	MRWWKALLVLVVAVAAPGYPQRAVDSPRVAPGQTCTAITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRLAQPPLTASQQRILECTHRLAEANADMPYTLFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDGTTDFA
Ga0157301_102357132	3300012911	Soil	MVMRSLKALLVCLVTVAPAYAQGAAAPPRVAAEQACTAVTQAHADESAGTVNINHDGTPIPGIPAPDISRGFSGIPRSAQP
Ga0157310_100281294	3300012916	Soil	MRSWNAPLVFVVAMAVAVAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTH
Ga0157310_105456692	3300012916	Soil	MQSWIALIVVVVAVAVTRVSAQGVVDVAPGHTCTAVTQANAAASAGAVNIQHDGTPIAGTQAPDISRGFSGIPRSAQPRLTASQQRILECTRRVAEAN
Ga0164298_108951901	3300012955	Soil	MHSWNALLVLVVSVAVAPAHAQRAVDPSRVATGHACTAITQANADASAGTININHDGTPIAGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQTPAPLVVDLHGLNITPLQQIL
Ga0164303_102861222	3300012957	Soil	MRSWNGLLALVVASAVAQANAQRAVDPVRVAPGHTCTAITQASADASAGTVNINHDGTPIAGIAAPDISRGFSGIPRSAQPPLSTSQQRIVECSRRVAEANADISYTLFVPSTYDPQKPAALVVDLHGLNITPLQQILF
Ga0164301_111140031	3300012960	Soil	MHSWNALLVLVVSVAVAPAHAQRAVDPSRVATGQACTAITQANADASAGTININHDGTPIAGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQ
Ga0164305_112666051	3300012989	Soil	MRSKAVLALILTVTATVAHAQRAEYSAPVRSGQTCTAITQAHADASAGTVNINHDGTAIPGTAAPDISRGFSGIPRSAQPPLTASQQRILECTHHVPEANADIPYTLFVPTSYDPQKPAPLV
Ga0163163_130263931	3300014325	Switchgrass Rhizosphere	MRLRIALFVLIAAVAPSPAHAQTCTPITQANADASAGTVNINHDGTPIAGIPAPDISRGFSGIPRSAQPRLTASQQRIRECTHHVAEANADIPYALFVPSTYDPQKPAPLVVDLHG
Ga0173483_109815831	3300015077	Soil	MRSWNAPLVFVVAMAVAVAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLF
Ga0132258_118364242	3300015371	Arabidopsis Rhizosphere	MMRSWNALLVLVVAVAAPGHPQRAVDSARVAPGQTCTAITQASADASAGTVNVHHDGTPVAGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLA
Ga0132258_125106361	3300015371	Arabidopsis Rhizosphere	MFTLAAVLSASPVFAQGGATVAQVAPGQTCQFVTQANADASAGTPNINHDGTPLPGTPAPDISRSFQGIPRSAQPKLTASQLRILECSYRLAEANADVPYTLFVPSTYDARKPSPLIVDLHGLNITPLQQILFD
Ga0132256_1023859621	3300015372	Arabidopsis Rhizosphere	MRSLYALLLLVVALAVAPVSGQRVVDPARVAPGQACTRITQANADASAGTVNVHHDGSPIDGTPAPDISRGFNGIPRSAQPPLTPSQQRILECTHHLAEANADIPYTLFVPSTYDPRK
Ga0132256_1037204071	3300015372	Arabidopsis Rhizosphere	MMRSWNTLLVVVVTLAVGPAHGQRAVDPARVAPGQTCTAITQANADASAGTVNINHDGSPLPGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQTPAPLVVDLHGLNITPLQQIL
Ga0132257_1000928793	3300015373	Arabidopsis Rhizosphere	MMRSWNALLVLVVTVAVAPDYSQRAVDSARGAPGQTCTAITQASADASAGTVNVHHDGTPVAGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLAEANADIPYTLFVPSTYDSQKPAPLVVDLHGLNITPLQQILFD
Ga0132257_1001475851	3300015373	Arabidopsis Rhizosphere	MHSWNALLVLVVSVAVAPAHAQRAVDPSRVATGQACTAITQANADASAGTININHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRVAEANADIPYTLFVPSTYDPRKPS
Ga0132257_1036676532	3300015373	Arabidopsis Rhizosphere	MRSWNAPLVFVVAMAVAVAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLA
Ga0132255_1005304141	3300015374	Arabidopsis Rhizosphere	MMRSWNALLVLVVTVAVAPDYSQRAVDSARVAPGQTCTAITQANADSSAGTVNVHHDGTPIAGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLAEANADIPYTLFVPSTYDSQKPAP
Ga0132255_1013493831	3300015374	Arabidopsis Rhizosphere	MRSLYALLLLVVALAVAPVSGQRVVDPARVAPGQACTRITQANADASAGTVNVHHDGSPIDGTPAPDISRGFNGIPRSAQPPLTPSQQRILECTHHLAEANADIPYTLFVP
Ga0190266_105633121	3300017965	Soil	MRWNALVVLVVAVAVTPVSAQRAVDVAPGHTCTAVTQANADASAGTVNIQHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTRRVAEANADISYTLFVPSTYDRQKPAPLVVDLHGLNITPLKQIL
Ga0184624_104707612	3300018073	Groundwater Sediment	MRSWKALLALFAATAVTAVHAQRAVDTTPLAPGHTCTAITQANADASAGAVNINHDGTPIAGVPAPDISRGFSGIPRSAQPPLTASQQRILECTH
Ga0190270_125815931	3300018469	Soil	MRSWNALLVFVVAVAAAPAYAQPVGDPARGVAGQTCTAITQANADASAGTVNISHDGTPIAGTPAPDISQGFRGIPRSAQPRLTASQQRILECTHRLAEANADMPYALFVPSTYDPQKPAPLVVDLHGL
Ga0190274_101089783	3300018476	Soil	VIRSWNALLVFAVVLTVAALPAYAQRPVIAAPGHTCTAITQANADASAGSVNINHDGTPLPGTPAPDISRGFSGIPRAAQPKLTASQQRILECTRRLAEANADIPY
Ga0190274_115548301	3300018476	Soil	MLLLASIRWFCLLPSAFSLILVMLVAAAPAYAQRAVDPARVAPGQTCAAITQANADVSAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTYRLPEANAEMPYTLFIPSTYDPKKPAPLVVDLHG
Ga0190271_106906692	3300018481	Soil	MRTFNALLVVVVAVAPAYAQRVEPARVATGHSCTLLTQAGADASAGTANINHDGTPIAGTPAPDISRGFKGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQRPAPLVVDLHGLNITPLQ
Ga0190264_121767932	3300019377	Soil	MRSWNALLVLVVVVAVAPASAQRAVDPARVAPGQTCTAITQANADTSAGTINIHHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPS
Ga0210399_113829131	3300020581	Soil	MPFRATFIALVLGLSASPAFAQGARPPASLTPGTPGQTCQPVTQANANASAGVANINHDGTPLPGQPPVDISKGFSGIPRSAQPPLTASQKRIFECTYPFAEANADMPYTLFMPSTYDARTPTPLVVDLH
Ga0210379_100043401	3300021081	Groundwater Sediment	MRSWNALLVLVVAVAVPPASAQRAGDPTRIAPGQTCATITQANADASAGTVNIHHDGTPLVGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLTEANADIP
Ga0222622_114654232	3300022756	Groundwater Sediment	VKQSWNTLLALVVLLAAPAYGQRSVDPARVAPGQTCTAITQAHADASAGTVNIQHDGTPIAGTTAPDISRGFSGIPRSAQPPLTASQQRI
Ga0207656_103003431	3300025321	Corn Rhizosphere	MRSSKALCVFVALAAVAPAYARRGVDPPRIAPRPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRHLAEANADIPYALFVPSTYDPQKPAALVVDLHGLNITPLQQILFDGTTDFA
Ga0207650_101125044	3300025925	Switchgrass Rhizosphere	MVMRSLKALLVCLVTVAPAYAQGAAAPPRVAAEQACTAVTQAHADESAGTVNINHDGTPIPGIPAPDISRGFSGIPRSAQPPLTASQRR
Ga0207709_103466741	3300025935	Miscanthus Rhizosphere	MRSCKGLLTFVVLALVAAAPAYAQRGVDPPRIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLAEANADMPYALFVPSTYDPQKPAP
Ga0207709_104913632	3300025935	Miscanthus Rhizosphere	VTGVPALPLTVSRVMRSWNALLLSVMALAVAPADAQRAVEPAVAPGHTCRAITQANADASAGTVNIQHDGTPIAGTPAPDISRGFNGIPRSA
Ga0207711_106057601	3300025941	Switchgrass Rhizosphere	MRSSKALCVFVALAAVAPAYARRGVDPPRIAPRPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRHLAEANADIPYALFVPSTYDPQKPAALVVDLHGLNITPLQQILFDGTTD
Ga0207703_102122793	3300026035	Switchgrass Rhizosphere	MRSSKALCVFVALAAVAPAYARRGVDPPRIAPRPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRHLAEANADIPYALF
Ga0207648_114348561	3300026089	Miscanthus Rhizosphere	MTRTRVDNRRTQAQALQMRSWRARLVVLVVTVAVVPASAQRAVDPARVAPRQTCTAITQANSDASAGAVNINHDGTPIAGTPAPDISRGFSGIPRSAQ
Ga0207683_116565871	3300026121	Miscanthus Rhizosphere	VIRSCKGLLAFVVLALVAAAPAYAQRGVGPPPIAPGPTCAAITQADADASAGTVNVQHDGSPIAGVPAPDISRGFSGIPRSAQPRLTASQQRILECTRRLAEANADMP
Ga0209996_10672241	3300027395	Arabidopsis Thaliana Rhizosphere	MAVAAAPAYAQRVVDPARVPPGHTCAAITQANADASAGTVNINHDGTPIAGTPAPDISRGFKGIPRSAQPRLTASQQRILECTHRLAEAN
Ga0209382_104350163	3300027909	Populus Rhizosphere	MRSWNALLVMVVAVAGAPAYAQHAVDPARVPAGHTCTAITQANADASAGTVNIQHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTRRVAEANA
Ga0247828_109369941	3300028587	Soil	MRSWNAPLVFVVAMAVAAAYAQRAAYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLA
Ga0307503_102679712	3300028802	Soil	MGFWNALLVLVVAVAVAPAPAQRAVDPARVAPGHTCTAITQANADASAGTVNINHDGTPIPGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDGTTDFAE
Ga0307281_101202921	3300028803	Soil	MRSWNALLVLVVAVAVPPASAQRAGDPTRIAPGQTCATITQANADASAGTVNIHHDGTPLVGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQKPASL
Ga0247827_106855392	3300028889	Soil	MRSWNAPLVFVVAMAVAAAYAQRAAYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPY
Ga0307500_102772771	3300031198	Soil	WMARLVFVVAVSVAPASAQRAVDPARVAPRQTCAAITQANADSSAGTVNINHDGTPIAGIPAPDISRGFSGIPRSAQPRLTASQLRILECTHHLAEANAAMPYTLFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDGTTDFAEQHGFIVLAPMGFNLSSWWGSRTGTPVATAA
Ga0302324_1019238491	3300031236	Palsa	MKRRTKRARTTPAIPGLLTTALLLAATAFAQPAPGQTCAPVTQAHADASAGTPNIGHDGTPLAGIPAPDISRGFSGIPRSAQPLLTASQRRVQECTYRFAEAN
Ga0310888_107608912	3300031538	Soil	MTRTRVDNRRTQAQALQMRSWKARLVVLVVTVAVVPASAQRAVDPARVAPRQTCTAITQANADASAGTVNINHDGTPIAGTPAPDISRGFKGIPRSAQPRLTASQQRIRECTYRLAEANADIPYTLFVPSTYDPQKPAPLVVDLHGLNI
Ga0310887_108044361	3300031547	Soil	MKRSCTALLVLVVAVAGAPGSAQRAVDPARVAPGHTCTAITQANAEASAGTVNINHDGTPIAGTSAPDISRGFKGIPRSAQPPLTASQQRILECTRPVAEANADIPYTLFVPSTYDPQTP
Ga0302132_103271841	3300031605	Marine	MRRWRLACAAGLFILPVSVSAQVGASAAELAPNQTCMPVTQANADASAGTANVQQDGSALPGIPLPDISQSFRGIPRSAQPPLTASQQRILECTYFLDEANAEMPYTLFIPSTYDPATPTPLVVDLHGLNITPLMQILFDG
Ga0310907_101166971	3300031847	Soil	MRSWNAPLVFVVAMAVAAAYAQRAVYPARVAPGHTCTPITQANADASAGTVNINHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQKPAPLV
Ga0310904_101197732	3300031854	Soil	MMRSWNALLVLVVAVAAPGHPQRAVDSARVAPGQTCTAITQANADASAGTVNVHHDGTPIAGTPAPDISRGFSGIPRSAQPPLTASQQRILECTHRLAEANADIPYTLFVPSTYDPQKPAPLVVDLHGLNITPLQQILFDGTTD
Ga0310892_101538331	3300031858	Soil	MVMRSLKALLVCLVTVAPAYAQGAAAPPRVAAEQACTAVTQAHADESAGTVNINHDGTPIPGIPAPDISRGFSGIPRSAQPPLTASQRRILECAYHLPEANADLPYALFVPSTYDPQKP
Ga0310893_101622582	3300031892	Soil	MRSWNALLVLVVALAVAPADAQRAVDPGRVAQGHTCTAITQANADASAGTANINHDGTPIAGTPAPDISRGFKGIPRSAQPRLTASQQRILECTHRVAEANADTPYTLFVPS
Ga0310893_104688221	3300031892	Soil	MVMRSLNALLVCLVGVAPPYAQRAAAPPRVAAEQACTAVTQAHADESAGTVNINHDGTPIPGIPAPDISRGFSGIPRSAQPPLTASQRRILECAYHLAEANADLAYALFV
Ga0307409_1002692092	3300031995	Rhizosphere	VKQTRNALLALVVALLAAPAYAQRSVDPARVAPGQTCTAITQAHADASAGTVNIHHDRTPIAGTTAPDISRGFSGIPRSAQPPLTASQQRILECTHRVAEA
Ga0310897_102695122	3300032003	Soil	MAGLTPKAWLILVGAMTAAPASAQTAPDPARIAPGQKCALITQANADASAGTANVNHDGTAITGIPAPDISRGFNGIPRSAQPPLTASQRRILECTYRLAEANADLPYALFVPST
Ga0310906_113635251	3300032013	Soil	MRSAWNASFVLVGAMTAASAFAQGVPDPARIAPGQTCTVVTQANADASAGKPNINHDGTPLAGIPAPDISRSFNGIPRSAQPPLTASQKRILECTYRLAEANADMQYTLFVPSTYEPGKPAP
Ga0308173_103442341	3300032074	Soil	MRSRNALLVLIVTVTVPVHAQRAVDSGTIHSGPTCAAITQAHADASAGTVNVNHDGTAIAGIAAPDISRGFSGIPRSAQPPLTASQQHILECTHHVPEANADISYTLFVPTSYDPQKPAPLVVDLH
Ga0310890_108314531	3300032075	Soil	MRWNALVVLVVAAAVTPVSAQRAVDVAPGHTCTAVTQVNADASAGAVNIQHDGTPIAGTPAPDISRGFSGIPRSAQPRLTASQQRILECTRRVAEANADISYTLFVPSTYDRQKPAPLVVDLHGLNITPLQQILFDGTTDLAERYGF
Ga0316604_107186011	3300033406	Soil	MGHCRRWIVLTLSIATTTAYAQNAPVAAQLAPGQTCTLITQASADASAGVANVNHDGTSLVGKPAPDISRGFNGIPRSAQPELTASQRRILECNYRLAEANADMPYALFIPSAYDGKRPAPLIVDLHGMGITPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070275

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences