Sample Metadata
3300060696
General
| Taxon Oid |
3300060696
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Mealworm larvae gut microbial communities from Newark, Delaware, USA |
| Genome Name Sample Name |
Metatranscriptome of mealworm larvae gut microbial communities from Newark, Delaware, USA - Gut-D15_PS_oats_a (Metagenome Metatranscriptome) |
| Img Genome Id |
3300060696 |
Project / Publication
| Gold Analysis Project Id |
Ga0590803
|
| Gold Sequencing Project Id |
Gp0691071
|
| Gold Study Id |
Gs0156635
|
| Is Published |
0 |
| Add Date |
04/03/2023 |
| Public Release Date |
04/02/2024 |
Environment / Ecosystem
| Ecosystem |
Host-associated |
| Ecosystem Category |
Arthropoda: Insects |
| Ecosystem Subtype |
Gut |
| Ecosystem Type |
Larva |
| Specific Ecosystem |
Unclassified |
| Habitat |
Mealworm larvae gut |
Sampling / Conditions
| Geographic Location |
USA: Newark, Delaware |
| Isolation Country |
8855 |
| Latitude |
39.6637 |
| Longitude |
-75.7558 |
| Sample Collection Date |
2022/7/28 |
Assembly
| Genome Size Assembled |
18860413 |
| Gene Count Assembled |
27188 |
| Sequencing Strategy |
Metatranscriptome |
Other Metadata
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Aaron Wright; Andrea Steiger; Kevin Solomon; Mark Blenner |
| Assembly Method |
MEGAHIT v. 1.2.9 |
| Award Doi |
10.46936/fics.proj.2021.60038/60000396 |
| Comments |
released based on JGI ITS |
| Contact Email |
[email protected] |
| Contact Name |
Mark Blenner |
| Cultured |
0 |
| Elevation In Meters |
31.000000 |
| Funding Program |
CSP-EMSL |
| Funding Year |
2022 |
| Gold Analysis Project Type |
Metatranscriptome Analysis |
| Has Coverage |
1 |
| Host Name |
Tenebrio molitor |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.1.13 |
| Img Submission Id |
298554 |
| In File |
Yes |
| Isolation |
gut of mealworms larvae |
| Rnd Project |
1 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Sequencing Method |
Illumina NovaSeq S4 |
| Submission Type |
Primary |
| Submitter Name |
Mark Blenner |