Sample Metadata
3300042599
General
| Taxon Oid |
3300042599
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Termite gut microbial communities from various locations |
| Genome Name Sample Name |
Termite gut microbial communities of Hodotermes mossambicus from Pretoria, South Africa - Hm464 |
| Img Genome Id |
3300042599 |
Project / Publication
| Gold Analysis Project Id |
Ga0466706
|
| Gold Sequencing Project Id |
Gp0524550
|
| Gold Study Id |
Gs0145210
|
| Is Published |
0 |
| Add Date |
12/21/2020 |
| Public Release Date |
03/13/2023 |
Environment / Ecosystem
| Ecosystem |
Host-associated |
| Ecosystem Category |
Arthropoda: Insects |
| Ecosystem Subtype |
Gut |
| Ecosystem Type |
Digestive system |
| Specific Ecosystem |
Unclassified |
| Habitat |
Termite gut |
Sampling / Conditions
| Geographic Location |
Pretoria, South Africa |
| Isolation Country |
8837 |
| Latitude |
-25.7535 |
| Longitude |
28.2377 |
| Sample Collection Date |
2018/11/17 |
Assembly
| Genome Size Assembled |
1332732946 |
| Gene Count Assembled |
1349900 |
| Sequencing Strategy |
Metagenome |
Other Metadata
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Andreas Brune |
| Assembly Method |
MEGAHIT v. 1.2.8 |
| Comments |
released by JGI data releasing policy |
| Contact Email |
[email protected] |
| Contact Name |
Andreas Brune |
| Cultured |
0 |
| Gold Analysis Project Type |
Metagenome Analysis |
| Has Coverage |
0 |
| Host Name |
Hodotermes mossambicus |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.20 |
| Img Submission Id |
245106 |
| In File |
Yes |
| Isolation |
termite gut |
| Rnd Project |
1 |
| Sequencing Center |
Eurofins MWG Operon |
| Sequencing Method |
Illumina NovaSeq |
| Sequencing Quality |
Level 1: Standard Draft |
| Submission Type |
Primary |
| Submitter Name |
Vincent Herve |