Sample Metadata
3300042550
General
| Taxon Oid |
3300042550
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Termite gut microbial communities from various locations |
| Genome Name Sample Name |
Termite gut microbial communities of Alyscotermes sp. from Kakamega Forest Station, Kenya - Aly426 |
| Img Genome Id |
3300042550 |
Project / Publication
| Gold Analysis Project Id |
Ga0466656
|
| Gold Sequencing Project Id |
Gp0514895
|
| Gold Study Id |
Gs0145210
|
| Is Published |
0 |
| Add Date |
12/20/2020 |
| Public Release Date |
03/13/2023 |
Environment / Ecosystem
| Ecosystem |
Host-associated |
| Ecosystem Category |
Arthropoda: Insects |
| Ecosystem Subtype |
Gut |
| Ecosystem Type |
Digestive system |
| Specific Ecosystem |
Unclassified |
| Habitat |
Termite gut |
Sampling / Conditions
| Geographic Location |
Kakamega Forest Station, Kenya |
| Isolation Country |
8775 |
| Latitude |
0.227031 |
| Longitude |
34.8927 |
| Sample Collection Date |
2015/6 |
Assembly
| Genome Size Assembled |
802911566 |
| Gene Count Assembled |
759783 |
| Sequencing Strategy |
Metagenome |
Other Metadata
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Vincent Hervé; Andreas Brune |
| Assembly Method |
MEGAHIT v. 1.2.8 |
| Comments |
released by JGI data releasing policy |
| Contact Email |
[email protected], [email protected]; [email protected] |
| Contact Name |
Andreas Brune, Vincent Hervé; Andreas Brune |
| Cultured |
0 |
| Gold Analysis Project Type |
Metagenome Analysis |
| Has Coverage |
0 |
| Host Name |
Alyscotermes sp. |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.20 |
| Img Submission Id |
243857 |
| In File |
Yes |
| Isolation |
termite gut |
| Rnd Project |
1 |
| Sequencing Center |
Eurofins MWG Operon |
| Sequencing Method |
Illumina NovaSeq |
| Sequencing Quality |
Level 1: Standard Draft |
| Submission Type |
Primary |
| Submitter Name |
Vincent Herve |