Sample Metadata
3300041968
General
| Taxon Oid |
3300041968
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Termite hindgut microbial communities from Coptotermes formosanus workers in Fort Lauderdale, Florida, USA |
| Genome Name Sample Name |
Termite hindgut microbial communities from Coptotermes formosanus workers in Fort Lauderdale, Florida, USA - CFCB1 |
| Img Genome Id |
3300041968 |
Project / Publication
| Gold Analysis Project Id |
Ga0456237
|
| Gold Sequencing Project Id |
Gp0508595
|
| Gold Study Id |
Gs0150034
|
| Is Published |
0 |
| Add Date |
11/14/2020 |
| Public Release Date |
03/13/2023 |
Environment / Ecosystem
| Ecosystem |
Host-associated |
| Ecosystem Category |
Arthropoda: Insects |
| Ecosystem Subtype |
Hindgut |
| Ecosystem Type |
Digestive system |
| Specific Ecosystem |
Unclassified |
| Habitat |
termite hindgut |
Sampling / Conditions
| Geographic Location |
USA: Fort Lauderdale, Florida |
| Isolation Country |
8855 |
| Latitude |
26.1 |
| Longitude |
-80.17 |
| Sample Collection Date |
2014/6 |
Assembly
| Genome Size Assembled |
198298058 |
| Gene Count Assembled |
454473 |
| Sequencing Strategy |
Metagenome |
Other Metadata
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Jonathon Hileman |
| Assembly Method |
Spades v. 3.11.1 |
| Comments |
released by JGI data releasing policy |
| Contact Email |
[email protected] |
| Contact Name |
Jonathon Hileman |
| Cultured |
0 |
| Gold Analysis Project Type |
Metagenome Analysis |
| Has Coverage |
0 |
| Host Name |
Coptotermes formosanus |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.20 |
| Img Submission Id |
241861 |
| In File |
Yes |
| Isolation |
colonies from captured alate pairs from Fort Lauderdale, Florida, United States of America |
| Rnd Project |
1 |
| Sequencing Center |
Arizona State University |
| Sequencing Method |
10x Genomics Chromium |
| Sequencing Quality |
Level 1: Standard Draft |
| Submission Type |
Primary |
| Submitter Name |
Jonathon Hileman |