Sample Metadata
3300022815
General
| Taxon Oid |
3300022815
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Multi-omic termite study |
| Genome Name Sample Name |
Termite gut microbial communities from Microcerotermes sp. nest - French Guiana - 27-16 mRNA |
| Img Genome Id |
3300022815 |
Project / Publication
| Gold Analysis Project Id |
Ga0255786
|
| Gold Sequencing Project Id |
Gp0264968
|
| Gold Study Id |
Gs0120447
|
| Is Published |
0 |
| Add Date |
02/07/2018 |
| Public Release Date |
03/03/2021 |
Environment / Ecosystem
| Ecosystem |
Host-associated |
| Ecosystem Category |
Arthropoda: Insects |
| Ecosystem Subtype |
Gut |
| Ecosystem Type |
Digestive system |
| Specific Ecosystem |
Unclassified |
| Habitat |
termite gut |
Sampling / Conditions
| Geographic Location |
French Guiana |
| Isolation Country |
8744 |
| Latitude |
5.06224 |
| Longitude |
-53.0474 |
| Sample Collection Date |
2017/1 |
Assembly
| Genome Size Assembled |
73323003 |
| Gene Count Assembled |
247297 |
| Sequencing Strategy |
Metatranscriptome |
Other Metadata
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Martyna Marynowska |
| Assembly Method |
CLC Genomics Workbench v. 9.5.2 |
| Comments |
released by JGI data releasing policy |
| Contact Email |
[email protected] |
| Contact Name |
Martyna Marynowska |
| Cultured |
0 |
| Gold Analysis Project Type |
Metatranscriptome Analysis |
| Has Coverage |
0 |
| Host Name |
Microcerotermes sp. |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.0 |
| Img Submission Id |
179008 |
| In File |
Yes |
| Isolation |
mature workers from termite nest |
| Rnd Project |
1 |
| Sequencing Center |
University of Luxembourg |
| Sequencing Method |
Illumina NextSeq 500 |
| Sequencing Quality |
Level 1: Standard Draft |
| Submission Type |
Primary |
| Submitter Name |
Martyna Marynowska |