Sample Metadata
3300009531
General
| Taxon Oid |
3300009531
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Host-associated microbial communities of aphids from plants in several locations around USA |
| Genome Name Sample Name |
Microbial communities of aphids from cabbage in Tucson, AZ, USA - Lipaphis pseudobrassicae NM032704 seqcov |
| Img Genome Id |
3300009531 |
Project / Publication
| Gold Analysis Project Id |
Ga0127525
|
| Gold Sequencing Project Id |
Gp0139335
|
| Gold Study Id |
Gs0118459
|
| Is Published |
0 |
| Add Date |
06/12/2016 |
| Public Release Date |
11/01/2019 |
Environment / Ecosystem
| Ecosystem |
Host-associated |
| Ecosystem Category |
Arthropoda: Insects |
| Ecosystem Subtype |
Unclassified |
| Ecosystem Type |
Whole body |
| Specific Ecosystem |
Unclassified |
| Habitat |
cabbage |
Sampling / Conditions
| Geographic Location |
Tucson, AZ, USA |
| Latitude |
32.2318 |
| Longitude |
-110.951 |
Assembly
| Genome Size Assembled |
206796682 |
| Gene Count Assembled |
110075 |
| Sequencing Strategy |
Metagenome |
Other Metadata
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Rebecca Chong |
| Assembly Method |
CLC Genomics |
| Comments |
released per JGI data release policy |
| Contact Email |
[email protected] |
| Contact Name |
Rebecca Chong |
| Cultured |
0 |
| Gold Analysis Project Type |
Metagenome Analysis |
| Has Coverage |
0 |
| Host Name |
Aphididae |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.11.2 |
| Img Submission Id |
88596 |
| In File |
Yes |
| Isolation |
aphids from cabbage |
| Rnd Project |
1 |
| Sequencing Center |
University of Texas, Austin |
| Sequencing Method |
Illumina HiSeq |
| Submission Type |
Primary |
| Submitter Name |
Rebecca Chong |