Sample Metadata
3300002938
General
| Taxon Oid |
3300002938
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Cephalotes varians microbial communities from the Florida Keys, USA |
| Genome Name Sample Name |
Larval gut metagenome for colony PL005 |
| Img Genome Id |
3300002938 |
Project / Publication
| Gold Analysis Project Id |
Ga0052929
|
| Gold Sequencing Project Id |
Gp0095984
|
| Gold Study Id |
Gs0085494
|
| Is Published |
0 |
| Add Date |
07/21/2014 |
| Public Release Date |
11/01/2019 |
Environment / Ecosystem
| Ecosystem |
Host-associated |
| Ecosystem Category |
Arthropoda: Insects |
| Ecosystem Subtype |
Gut |
| Ecosystem Type |
Digestive system |
| Specific Ecosystem |
Unclassified |
| Habitat |
Cephalotes varians |
Sampling / Conditions
| Geographic Location |
USA: Big Pine Key, Florida |
| Isolation Country |
8855 |
| Latitude |
24.6333 |
| Longitude |
-81.3618 |
| Sample Collection Date |
2012/6/1 |
Assembly
| Genome Size Assembled |
331374827 |
| Gene Count Assembled |
484648 |
| Sequencing Strategy |
Metagenome |
Other Metadata
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Yi Hu |
| Comments |
released per JGI data release policy |
| Contact Email |
[email protected] |
| Contact Name |
Yi Hu |
| Cultured |
0 |
| Elevation In Meters |
1.000000 |
| Gold Analysis Project Type |
Metagenome Analysis |
| Has Coverage |
1 |
| Host Name |
Cephalotes varians |
| Img Submission Id |
44861 |
| In File |
Yes |
| Isolation |
Arthropoda gut |
| Rnd Project |
1 |
| Sequencing Center |
Harvard University |
| Sequencing Method |
Illumina HiSeq 2000 |
| Submission Type |
Primary |
| Submitter Name |
Yi Hu |