Sample Metadata
2698536704
General
| Taxon Oid |
2698536704
|
| Ncbi Domain |
Archaea |
| Sequencing Status |
Permanent Draft |
| Study Name |
Methanimicrococcus blatticola PA genome project |
| Genome Name Sample Name |
Methanimicrococcus blatticola PA |
| Img Genome Id |
2698536704 |
Taxonomy
| Ncbi Phylum |
Methanobacteriota |
| Ncbi Class |
Methanomicrobia |
| Ncbi Order |
Methanosarcinales |
| Ncbi Family |
Methanosarcinaceae |
| Ncbi Genus |
Methanimicrococcus |
| Ncbi Species |
Methanimicrococcus blatticola |
Project / Publication
| Gold Analysis Project Id |
Ga0137534
|
| Gold Sequencing Project Id |
Gp0156044
|
| Gold Study Id |
Gs0121554
|
| Is Published |
0 |
| Add Date |
10/04/2016 |
| Public Release Date |
10/22/2021 |
Environment / Ecosystem
| Ecosystem |
Host-associated |
| Ecosystem Category |
Arthropoda: Insects |
| Ecosystem Subtype |
Unclassified |
| Ecosystem Type |
Digestive system |
| Specific Ecosystem |
Unclassified |
| Habitat |
Cockroach, Hindgut, Hind-gut of cockroaches, Host |
Sampling / Conditions
| Geographic Location |
Artis (Natura Artis Magistra) Zoo, Amsterdam, The Netherlands |
| Isolation Country |
8798 |
| Latitude |
52.366 |
| Longitude |
4.9165 |
| Sample Collection Temperature |
35 c |
| Ph |
7.2 - 7.7 |
Assembly
| Genome Size Assembled |
1778439 |
| Gene Count Assembled |
1600 |
| Sequencing Strategy |
Whole Genome Sequencing |
Other Metadata
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
C. S. Raman |
| Ani Cluster Id |
5278 |
| Ani Cluster Type |
clique |
| Assembly Method |
ABySS v. 1.5.1, SSPACE v. 1.0 |
| Cell Shape |
Coccus-shaped |
| Comments |
released by C. S. Raman |
| Contact Email |
[email protected] |
| Contact Name |
C. S. Raman |
| Culture Type |
Isolate |
| Cultured |
1 |
| Diseases |
None |
| Energy Source |
Lithotroph |
| Genbank Anomalous Assembly |
No |
| Gold Analysis Project Type |
Genome Analysis (Isolate) |
| Gram Staining |
Gram- |
| Gtdb Class |
Methanosarcinia |
| Gtdb Domain |
Archaea |
| Gtdb Family |
Methanosarcinaceae |
| Gtdb Genus |
Methanimicrococcus |
| Gtdb Order |
Methanosarcinales |
| Gtdb Phylum |
Halobacteriota |
| Gtdb Species |
Methanimicrococcus blatticola |
| Has Coverage |
0 |
| High Quality |
1 |
| Host Name |
Periplaneta americana |
| Img Submission Id |
97172 |
| In File |
No |
| Isolation |
hindgut of the American cockroach Periplaneta americana |
| Metabolism |
Methanogen |
| Ncbi Assembly Accession |
GCA_020685265.1 |
| Ncbi Genbank Id |
JAJENP000000000 |
| Ncbi Strain |
PA |
| Ncbi Taxon Id |
91560 |
| Oxygen Requirement |
Anaerobe |
| Relevance |
Ecological, Environmental, Insect commensal, Energy conservation, Biochemical |
| Rnd Project |
1 |
| Sample Body Site |
Gastrointestinal tract |
| Sample Body Subsite |
Gut |
| Sequencing Center |
Baseclear |
| Sequencing Method |
PacBio RS, Illumina |
| Sequencing Quality |
Level 4: Annotation-Directed |
| Sequencing Stat |
Complete |
| Submission Type |
Primary |
| Submitter Name |
C. S. Raman |
| Temperature Range |
Mesophile |
| Type Strain |
Yes |