NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000262

7000000262: Human stool microbial communities from NIH, USA - visit 2, subject 764224817



Overview

Basic Information
IMG/M Taxon OID7000000262 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052780 | Ga0030586
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 764224817
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size105893443
Sequencing Scaffolds6
Novel Protein Genes9
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F068941Metagenome124N
F078004Metagenome117N
F080163Metagenome115N
F101357Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1606248All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2131Open in IMG/M
C1608816All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii2401Open in IMG/M
SRS047044_WUGC_scaffold_20673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2116Open in IMG/M
SRS047044_WUGC_scaffold_22751All Organisms → cellular organisms → Bacteria3271Open in IMG/M
SRS047044_WUGC_scaffold_26485All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1458Open in IMG/M
SRS047044_WUGC_scaffold_29463All Organisms → cellular organisms → Bacteria5281Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1606248C1606248__gene_155579F013656MSKTYKEPNKSETETTINVLYSEKMISIYTNKVGLQKQLNKLIGEPTKEYKFKRSIVGSMWEIPLDDKIRISRLVLKA
C1608816C1608816__gene_157085F101357MNLNNITTALKTGITIYQYEQWQNIGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
SRS047044_WUGC_scaffold_1286SRS047044_WUGC_scaffold_1286__gene_737F078004LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGSATLDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
SRS047044_WUGC_scaffold_15083SRS047044_WUGC_scaffold_15083__gene_28508F078004LSSRNTDFLLRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF
SRS047044_WUGC_scaffold_20673SRS047044_WUGC_scaffold_20673__gene_41188F068941MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSF
SRS047044_WUGC_scaffold_22751SRS047044_WUGC_scaffold_22751__gene_46173F044555MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHK
SRS047044_WUGC_scaffold_26485SRS047044_WUGC_scaffold_26485__gene_55594F013656LNKGSTMKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKIQKVILKANIYDM
SRS047044_WUGC_scaffold_29463SRS047044_WUGC_scaffold_29463__gene_65000F080163MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLENINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIELLQEKLDLIREEICELIGINPNLEKQGHKDNYVFNLNIDSDNQIGLFLQATEL
SRS047044_WUGC_scaffold_29463SRS047044_WUGC_scaffold_29463__gene_65001F032312MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSYGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALNDGVEGYPFKKYAIPYIFILVAWFIIFLYGLVS
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