Sample 3300034770

3300034770: Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S17 (Eukaryote Community Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300034770 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0135752 \| Gp0349001 \| Ga0326781
Sample Name	Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S17 (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	27623023
Sequencing Scaffolds	19
Novel Protein Genes	21
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	6
Not Available	12
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → microcosm → soil
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: North Carolina
Coordinates	Lat. (^o)	36.0	Long. (^o)	-78.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000074	Metagenome / Metatranscriptome	2624	Y
F000654	Metagenome / Metatranscriptome	958	Y
F002256	Metagenome / Metatranscriptome	577	Y
F005042	Metagenome / Metatranscriptome	413	Y
F005440	Metagenome / Metatranscriptome	400	Y
F006780	Metagenome / Metatranscriptome	364	Y
F007511	Metagenome / Metatranscriptome	349	Y
F009870	Metagenome / Metatranscriptome	311	N
F011471	Metagenome / Metatranscriptome	290	N
F014933	Metagenome / Metatranscriptome	258	Y
F019268	Metagenome / Metatranscriptome	230	Y
F022569	Metagenome / Metatranscriptome	213	Y
F024233	Metagenome / Metatranscriptome	206	Y
F030647	Metagenome / Metatranscriptome	184	N
F044225	Metagenome / Metatranscriptome	154	Y
F057030	Metagenome / Metatranscriptome	136	Y
F066328	Metagenome / Metatranscriptome	126	Y
F075534	Metagenome / Metatranscriptome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0326781_02771	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	1631	Open in IMG/M
Ga0326781_03621	Not Available	1435	Open in IMG/M
Ga0326781_03941	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	1362	Open in IMG/M
Ga0326781_04288	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	1298	Open in IMG/M
Ga0326781_05483	Not Available	1114	Open in IMG/M
Ga0326781_05647	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	1094	Open in IMG/M
Ga0326781_08468	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	821	Open in IMG/M
Ga0326781_08500	Not Available	819	Open in IMG/M
Ga0326781_09710	Not Available	744	Open in IMG/M
Ga0326781_10613	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	696	Open in IMG/M
Ga0326781_10629	Not Available	695	Open in IMG/M
Ga0326781_11898	Not Available	638	Open in IMG/M
Ga0326781_13423	Not Available	585	Open in IMG/M
Ga0326781_13852	Not Available	573	Open in IMG/M
Ga0326781_14065	Not Available	566	Open in IMG/M
Ga0326781_14114	Not Available	565	Open in IMG/M
Ga0326781_14724	Not Available	548	Open in IMG/M
Ga0326781_15800	Not Available	522	Open in IMG/M
Ga0326781_16091	All Organisms → cellular organisms → Eukaryota	516	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0326781_02771	Ga0326781_02771_62_1630	F066328	VRSSDTPSTVKSASKEAVDFVKIWRPVFQLLIRSRDFRQLIVDSLRIVRRIVSRHEGIVGDLSQKFVEGESVRELKQTARGHRETNVNVKMTDREWEYLQEEIQGVLAVLARNPQYHDAINRLFTLLDMFSSNMKSALPSSDSNRFELEIHARKAKMETEELVASFTGKEILKEFKFRLRRLIQANNKDPEVRRYFSEVKAFILSSKSEEEVRSELFRQKTRDLINWGRYLVEKSKERNELEQFLETGNQVIENIKNDEYVKELRMRAGIVRSDLTYVDNEGRSKIDVDMLVKLQAALMPVLADTFQKIHIPRIEHSDPRLDFWVDNIVLCGYDIFPDNIKFHIEHETELSIRDVESRGSYTRLVIHLDKLRTEIRNIEFYFKKKTMPSLSDSGLVTFRIPENGAYLGIYFTIEERPGETHPRLSEGYAEFSIRKMEIEFDKSTLKHDVLLPMMTSLAKSTIQSKIEKEVETNLSNAIKQLGDRLTLALGEIHRPSFFPVAKFSSVKETIKASDPAQVYAKRR
Ga0326781_03621	Ga0326781_03621_1_450	F024233	LGFDFTKSGFFITLDAVTGNIPFDLQVGFHIYPDRNGIEFLQLSPDGSCYSYLYLQWLWTYLIPVYEVPWTSTYTGTARVNGDTCTVWKTTWNWYDNAAVLYVRESDHVIVQSLVPDPVSFSPSLLTFSNVQGTVNPSGYGRPSTCSEMM
Ga0326781_03941	Ga0326781_03941_2_1348	F014933	ANVKEEVKEKSKEETPLTNEEEDTLLSEWQGMFILLAQQPTYREGIHQMFSLFDMWRRTSREEVIPGGTKAETHVRRVTMETEELVASFAGRESLENWKSSLWTLYDSLDKSPEWNQYLTDLKNFILSTQSEEEVRSEEFKRRSKELAHRGRDLVQQLKDRSEVDNFITCSEILFDNIKNDEYVRVLREQAGIVSSELSYMDTEGNVMVDTDMMSKLQTVLLPTLAETLKYIPMPRIESRDSHREFWLDNIVLCGYDVIPENIHFHLESDSQFSFKDIKTKGSYSHLVITLDKFRTELKNMSFFYKKKTFPELMDSGVVTFRIGGQGARLKLVFTVEQRTGDKFPRLTEGYADFHIRHMDIDFDKSTLTHDVLLPMMTNMWKLQIQTQIERVVEKNLTNIVQKLSEQLTQTLSEVNRPFLWSGLDTARHAMKKSELGQVYANRREKLE
Ga0326781_04288	Ga0326781_04288_14_1297	F014933	TDQEWESLLDQLQRVLVVLAREPTYREGINRLFSLFDMFRNTSPQTLPGGTQAETHTRRAKQETEDLVASFAGRENLEQFKYHLRKLVDMFNNNPEWNQYLNELKDLLLSSKSEEEVKSEQFKQRSKNLANRGRELMQRLKDENEVDNFFRSANILLDNIKNDEYVKLLREQAGIVSADLSYVDTTGKVQVDMDMLSKLQSVLLPVLAESLKYIPMPRIESHDSKREFWLDNITLCGYDVIPENIHFHLESDSDLSFKDIETKSYTHLVIRLDKFRTELKNLKFWYKKKTFPELTDSGVVTFRIAGDGARLNIVFTVEQPSGGRPRLTEGYADFHIRQMDIEFDKSTLKHDVLVPMLTSLFKLQIQTQIEKVVENNLTGAIQKLGEQLTLTLSEVNRPFTGGLESARQALKKSEVSQVYGNRREKLE
Ga0326781_05483	Ga0326781_05483_28_1074	F000654	MSEHTIQRVMVNTRRILKYQVLAEIEKELATEDAGRAFEDLRKHCKILIYNCYQFLAHVFRAEVDGKITAADKLLKTLEEDEQLSKVMGDDLTKVMDSINGVKSRNEKYSFDLGQRGFIYVLDFLDLTKLTDNDPNLPNIFTGTLSGLEEFFRGNSFITFKYLKAHALLLELGKLFIVIEKAANCAKQGGTLLVYGVANAQLNALLDSTKSMINAIRDEFTAVCKIAECAFEKLVYENKATVERSKWMGHFQHVFPASNMINESVKEVLHDVADIKATANAMTLYERFQKAQNDTADFLSSAEGFSQRTAAVLGQEYKKPEIKEDDLKKGSIDNTEALFAQINQSVNK
Ga0326781_05647	Ga0326781_05647_2_1093	F014933	ETEDLVACFAGRESFEKWKSSLWNVIDLFQNNPEWNQYLEDLKNFILSTQSEEQVRSEEFKQKSKDLAHRGRDLAQQMKDRSEVDNFLNSSEELLDNISNDEYVKLLREQAGIISSDLSYVDTEGNLTVDTNMLSKLQTVLLPTLAESFKYIPMPRIESRDSDREFWLDNITLCGYDIIPENIHFHLESDSDFSFKDIKTKGSHTRLVITLDKFRTELKNMSFFYKKKTFPVLTDSGVVTFRIGGDGARLKLVFTVDQSSGDKLPHLTEGYADFHIRQMDIKFDKSTLTHDVLLPMMSNMWKLQLQTQIEKIVEKNLTSVIQKLGEQLTQSLNEVNRPFIWGGLETARQAVKKSEIGQVYANRR
Ga0326781_08468	Ga0326781_08468_2_790	F002256	MVENIKNDEFLKVLRKQAGVVQSDLSYIDDEGLIQIDNNMLSKLQSVLIPVLADALKYIPVPRIYSCDKNREFWLDRIVLCSYDIIPENIRFHLETDSEISFRDVEVKETSTYLVIELNRLVTELKNVEFFYHKKTFPELEDSGIVTFRETGEGSRLTITYNVAQGPEDKVPRIIEGKATFDISNLEIEFDKDTLRHPVLVPMLTNMFKLQIKNQIEYQVEKNLTNWINNLGDMITNQVAQTNRPFLSGWDAARKLVKNSPLA
Ga0326781_08500	Ga0326781_08500_193_819	F075534	MPSGVINQFGKRAIVLPPPNNNTNVNITISPEQVPAPSINNSTLNATTNFTSQWVHVYFTPKTFNVTIISNITDIYYINNGPCMPLMDYWKDVTLGCPCDSTWNNTGYYNSSSKCFEGGRQITPNQCPNNTCHETFFLNDTIIYANIRLNTTLFVENGTVANKTAELTKVSPFKEIGYAYGANDIIAVFMLSNETEVSLPSVPQTTVPE
Ga0326781_09710	Ga0326781_09710_14_742	F005042	NNDDFKNKVNAILKVQLEDNTQSKPGSVPSPYVMKKVGGSVAPQWKVTSSYSSEWNYYVYLKISNLEPIGTLLEKINQVQDDMIAELGRGVVEKTTDTTSDLHIRLVVIKETIPNAMEMALKSLGGLPVISGRPFVDFGGILTSDEAVSMALFSETLEEVVAYIYDHCSKTPGLELQRVEPAALNQKGLFKLDVLGVGIPSEFRKPSQKARFGRYGWNKIEVVNNQTNRVYAKIDVSVQGQY
Ga0326781_10613	Ga0326781_10613_1_696	F005440	MLVKLQTVLIPVLAETFTKIQIPRIESSDSKLDYWADNIVLCGYDILPDNVKFHVERDTELSIRELDTKGSHTRLVIHLDKLRTEVKNIEFYFKRKTFPALSDSGLVTFRIPENGAHLAIYFTIEDRPGETHPRLEEGYADFTIRKMDIEFDKSTLKHDMLIPMFTSLMKPTLKSKIEKAVETKLTSALKQLGDRLTLALGELNRQPVFGSMKDTIKSSAPHQVFQQRREKL
Ga0326781_10629	Ga0326781_10629_38_694	F022569	MSSTIASTNVNIREVAKEQLEKERERQLSGEQQSFRLREVQDLAQQLRVFLTEGQLPGPEVLTPVLLKAEELLVKITLRADLEPETRHLIEDISSLVVTAKQMDRNKGISDRLQRIAEESQKAIETMRRSGVPTEAKEASKETLDFINNWRPVFQLLSRSRDFRQLFVDSLRIAKRVLSRQAKPIVEYAKERFVEGQTATTIAHTAKEEIKDKSNEEIP
Ga0326781_11898	Ga0326781_11898_161_607	F057030	LVELLSHIFEVQLRAFNGIRVQYIRNLRESIDEIKDADSAVRVSRAAFKGAVFPVINLLGYHHWIRATEAFYETSKIIVMHVFNSTVWPAIKAGLDAIQSLIPEELGSMGLKLEPLVRAVVDFIINKALTWAMNKVFLALERALFSQE
Ga0326781_12843	Ga0326781_12843_3_563	F000074	MRDNPSVSGGWCPWCQGDQVGCTNKPFCDPPTPCYGAPGPMTVAASKFSGYTNLKDKNGEYWIDQTGGSNTEPVWCPGQTIPYSFFNFADHNGIYQFQIMPGKPGDEKESGFKNFTEWRSINNDPSVTYYDIDGVTPLKAGVCKNGDPWAPSIGHCKDYNLYKSSFKLPTNLTPGNNIFRWIWYGAM
Ga0326781_13423	Ga0326781_13423_3_584	F007511	PVVLGILGVVGIKQLDVEVHLSGDTLLEAKSTINAEVSKSAATLLSREKGKQVPEQLFLLFSTFGNAATTLKFKGIGEGFSNTAFQDFLFKEFLELRDTDPASVRGREAFIKLFGENNPTAFVTALLTELFVIDREEKLWALYKRAFHVFTGIHDLVLVAKDAIITVDFNFPHLKSYFASPETIEEWRSQKNSS
Ga0326781_13852	Ga0326781_13852_328_573	F030647	ANFLLYLRTPRIKPEIETRLGYPVLNSDHVHLSDMTVFITSSSVHLLFVIQHGGKIKPKIGPKVIHILLALEKLFLLQKFI
Ga0326781_13866	Ga0326781_13866_2_571	F022569	LPGPEALTPGLLKAEELLAKIALRTDLEPETRQVIEDIATLVVTAKQMDRNKGIADRLQKIGEESQKAVEAMRRSGVSAEARQATQETLDIISNWRPVFDLLSRSRDFRQLFVDTLRIVRRVISRQAEPIVEGAKEGFVEGKPASTIAQNAKEDIKEKSKEEAPLTNEEEDTLLSEWQAMFILLAQQPTY
Ga0326781_14065	Ga0326781_14065_1_501	F011471	VWPPAASTSLLVKGWDRPDDTHFFRWFYDAKANKERFDGPVRFGGEFYWAETIVDTLVHREMTVIHQEGLVMCFNRASNVTIPQPNFDMVTYVGKSEIDFDVVDQWAQTSGGRVILNIWAKASNQELVRVDYNDPRRGHVVSYNFHEFDAGPQDPSLWTVPSEILAI
Ga0326781_14114	Ga0326781_14114_51_563	F009870	MNKNHDKHNKGVHPAFHMNGHGYPASLKKLVIVLLAIDFFTLLVSILAFAFTIAYMAKEGEIDYGCSNGYYPTDWLSASFGLTIISEITTIVAMILLMIIWLVRKKSMSIIYRFRLNRWLHIFLVFSRIALLIALLGLLKKHEHFWCYRSTGLWVIVFDAITALSIMQVIG
Ga0326781_14724	Ga0326781_14724_3_536	F019268	MKSLLAVLVLTFLVATVHSQEPSAEIVQFIEGLAVGLEVVIGDPAVCAKDLNVTEEDFLQGYALIKQGMADISLSKVEAGLKLWSDGLSEINVALKDCGAGTITADIEKILEEISSGTTGLLEFICREILSVIENDLQDLYSKAIAAMDANPPDWYTAGMYSGEILGYLLDQFGNGHA
Ga0326781_15800	Ga0326781_15800_13_255	F044225	VDEVVDGVKSKVGLASEAIKHKKEELEEEARHAAAVAAENARHASADAQYSDAAGTAKEKMHDAKRNLKQKAAEFVDNHL
Ga0326781_16091	Ga0326781_16091_2_475	F006780	MKILVLSLFVIIYCVITTESCTCTTTSQLEQYLADTATYPYVAEVQILSKVDNNGQYNDDLVRYRAQVLTVFNGCIKTGKCPILLETQNSSATCGRPLDDAIGQKYVISFRNGSTSCKNSYGFGLCDYFALSSDLQGTDDIWLLNNWKNDCLGVCATG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300034770: Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S17 (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences