NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034686

3300034686: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R1



Overview

Basic Information
IMG/M Taxon OID3300034686 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356207 | Ga0334891
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size464365507
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla1
Not Available5
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Archaea → Euryarchaeota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005744Metagenome / Metatranscriptome391Y
F054063Metagenome / Metatranscriptome140N
F066219Metagenome / Metatranscriptome127Y
F070092Metagenome123N
F073228Metagenome / Metatranscriptome120N
F074777Metagenome / Metatranscriptome119Y
F075034Metagenome / Metatranscriptome119Y
F080090Metagenome / Metatranscriptome115Y
F089495Metagenome / Metatranscriptome109N
F103499Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334891_005705All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii8315Open in IMG/M
Ga0334891_013016All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla4401Open in IMG/M
Ga0334891_024766Not Available2669Open in IMG/M
Ga0334891_039259All Organisms → Viruses → Predicted Viral1848Open in IMG/M
Ga0334891_054311Not Available1423Open in IMG/M
Ga0334891_069338All Organisms → cellular organisms → Archaea → Euryarchaeota1165Open in IMG/M
Ga0334891_098687Not Available867Open in IMG/M
Ga0334891_104350Not Available827Open in IMG/M
Ga0334891_106563Not Available813Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334891_005705Ga0334891_005705_8193_8315F080090MQQGDGWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDI
Ga0334891_013016Ga0334891_013016_454_726F075034VYRTVRGNKPACEHLPSEAGLPGRVDRVAACRSCGAPTASSDGICRDCADAMREERAAALGEGCRVHRVRYVEDLPVSVLEEMQAEWGRC
Ga0334891_024766Ga0334891_024766_3_317F074777GEKWEFRSFYGYSQGDYCEVIYCKAYYSESHITEIGKFWLGCGTEFCIDGCYGYFVIDELRWEEGGKLRNYLAELYGCKPEELKIYLYAGEHIVTDYKLLERVV
Ga0334891_039259Ga0334891_039259_2_529F070092MAINDRLKPVMELLETNKQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSV
Ga0334891_054311Ga0334891_054311_56_619F089495MGRPYLRKSHVAVRFYDGTGTTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVATGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITAL
Ga0334891_069338Ga0334891_069338_106_555F054063MNAWLYGVENTANIFFDKPKLFYRRWGTIAIRPFIESWNDLGMDFQKGLSPFNTAKMFVDALVKAEFFNSADFEMAGDDINFTFKAINCPYKSHCSRLIDERKEIACLRAITLLGAMEYNKEGESLKYMYKFEFNKENPCLVSFEKFKD
Ga0334891_098687Ga0334891_098687_3_434F066219MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDA
Ga0334891_104350Ga0334891_104350_548_826F073228GILVEGVEGIDMAITIGDIMDANNSKYGEFLYRIVMVYPHNLEVDKTELARLIKINNNTLTFERKNGEKFRIDERDIEHMEIFKSPNYRGGI
Ga0334891_106563Ga0334891_106563_157_309F103499LHDLIHDRIAMEGCVCEAGLRSRLIYTCDEYVPDEAILSPQDEIRRLVEE
Ga0334891_106563Ga0334891_106563_422_781F005744MDEMFEIIKAGAPNGPPEQALYRIQQTYSDGSGGRLNVDWDGLLRLHEVIHDRIALEGRVCETCGTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE
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