NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034683

3300034683: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-3



Overview

Basic Information
IMG/M Taxon OID3300034683 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118431 | Gp0324337 | Ga0310147
Sample NameFracking water microbial communities from deep shales in Oklahoma, United States - K-7-3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size389110958
Sequencing Scaffolds9
Novel Protein Genes15
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available3
All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → fracking liquid
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oklahoma
CoordinatesLat. (o)35.812Long. (o)-98.262Alt. (m)N/ADepth (m)2943
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F028664Metagenome191Y
F033769Metagenome / Metatranscriptome176N
F075996Metagenome / Metatranscriptome118N
F077200Metagenome / Metatranscriptome117N
F082560Metagenome113N
F088079Metagenome / Metatranscriptome109N
F103496Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0310147_000039All Organisms → cellular organisms → Bacteria148369Open in IMG/M
Ga0310147_001095Not Available25127Open in IMG/M
Ga0310147_004430All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae9830Open in IMG/M
Ga0310147_029113All Organisms → cellular organisms → Bacteria2218Open in IMG/M
Ga0310147_037228Not Available1800Open in IMG/M
Ga0310147_067039Not Available1070Open in IMG/M
Ga0310147_081359All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes898Open in IMG/M
Ga0310147_128161All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes588Open in IMG/M
Ga0310147_133461All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes566Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0310147_000039Ga0310147_000039_1653_2333F075996MLNSSTGQAVGVLLPYWSYIPTDRISPKGLLYPVSQIMKEGNLLRFVMLVGGAKEEVSMAGKDFFWSDVNKMYLPEYCLIDITAKFRDRICTFTGLYAGKDGLFVNGKKAGSFKDISSIFAHYGLSEVWNLITGDIRPSCGVYRYGRLFVPETEVCLGLISERANFPKGYDMKDLGRVERILEDAGVFEIPEEISLADVEEKLSKFAEVEKILDGFADRDEETLLR
Ga0310147_000039Ga0310147_000039_52673_53434F077200MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQGEKIKPVVYKLNEKIFKTVEIFKFPEEEPDMEKGEINIVDIDR
Ga0310147_001095Ga0310147_001095_2744_3097F022008MTLSEIEMLQSALNELSKQLQTLSDENRSSFGHIYDRLTRIETQMTERECRFKKYEKALENHEVRIRTVEGELGTLRDVPERLWRVSMSNSKLTGMIAAAGGMGGLVATLISKILGE
Ga0310147_001095Ga0310147_001095_3099_3323F103496MPLDDRIRKLPLTKLIALYFTVFTCVLIVLDVTTLCPLTDKSADLLKWLGSTIIVGYFGKSAYEHKMNTTSGVK
Ga0310147_001095Ga0310147_001095_342_611F033769MSAINCGVKTATYTPSTVGVAVGRKYLRLTNESLDMRCRAGVSNISSTAGIIIEPGQTVEFRPLPSENREIYVMSEGKAVKLAYYEVIV
Ga0310147_001095Ga0310147_001095_4971_5363F082560MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEANAWVVEVKVPNAKPRVPKELRERLPKEMREWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ
Ga0310147_004430Ga0310147_004430_5981_6334F022008MTLSDIEILQSTLRDLSKQVQKLSEENRVSFNHIHDRLTRIETQMSERECQFKRYEKQLENHEVRIRTVEGELGTLRDVPERLWRVSMSNSKLTGMIAAAGGVGGLVATIIVKMLGD
Ga0310147_004430Ga0310147_004430_6336_6563F103496MPLDDRIRKLPLTKLIALCFTVFTCVLIVLDVTTLCPLTDKSADLLKWLGSTIIVGYFGKSAYEHKINTTSGMKQ
Ga0310147_004430Ga0310147_004430_8207_8650F082560MYAVIWRAWISLDGGIGMTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELRERSPKEMQEWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGFSIGGKHYDRFRRTQ
Ga0310147_029113Ga0310147_029113_1795_2187F082560MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEANAWVVEVKVPNAKPRVPKELRERLPQEMREWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ
Ga0310147_037228Ga0310147_037228_800_1192F082560MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELREGLPKEMREWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ
Ga0310147_067039Ga0310147_067039_464_859F028664MILIGGQALRNLGSDRYTEDIDFLIDNKESNQAFITGASVDYLNANANKFFKEIYNIEEGNEQATPQSLFELKAYAFVQHCQNFNFAKADACEYDLKFLVRNFDVKPNIVKRYISSGELSEINKIINSVKK
Ga0310147_081359Ga0310147_081359_1_225F088079MLTEKAIWLEKVPFRNVDGAIGGQNCPVYFVESMIVGQSCTFCTSILGNLAPNPYIMLTRLDVFIHICEIYKVDI
Ga0310147_128161Ga0310147_128161_244_504F088079MLTEKAIWLEKVPFRSIDEAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLDVFVHICEIYKADITFFKSNVVSTK
Ga0310147_133461Ga0310147_133461_336_566F088079MLTEKAIWLENVPFRSIDEAIGRQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITF
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