NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034397

3300034397: Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S59 (Eukaryote Community Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300034397 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0135752 | Gp0348992 | Ga0326772
Sample NameMetatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S59 (Eukaryote Community Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19626752
Sequencing Scaffolds9
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia1
Not Available7
All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → microcosm → soil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000025Metagenome / Metatranscriptome5578Y
F001429Metagenome / Metatranscriptome696Y
F001895Metagenome / Metatranscriptome620Y
F002256Metagenome / Metatranscriptome577Y
F003301Metagenome / Metatranscriptome494Y
F011727Metagenome / Metatranscriptome287N
F015442Metagenome / Metatranscriptome254Y
F016913Metagenome / Metatranscriptome243Y
F029607Metagenome / Metatranscriptome187Y
F043723Metagenome / Metatranscriptome155Y
F058597Metagenome / Metatranscriptome134Y
F079511Metagenome / Metatranscriptome115N
F093019Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0326772_03702All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia886Open in IMG/M
Ga0326772_04485Not Available815Open in IMG/M
Ga0326772_05714Not Available725Open in IMG/M
Ga0326772_09142Not Available578Open in IMG/M
Ga0326772_09216Not Available576Open in IMG/M
Ga0326772_09606Not Available565Open in IMG/M
Ga0326772_10022All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.553Open in IMG/M
Ga0326772_10621Not Available537Open in IMG/M
Ga0326772_11844Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0326772_03049Ga0326772_03049_273_956F079511MEGAKQMVWQGVEKAKGMFSSNKPVTEQHPGKSYNWKKVTGEQGQTRWVATDDWSNDSARGTFWEKAKGVFTSNRDAKDSEFEQKQEFTAEGHEQKGVLQGAKEKVWQGVEKAKGMFSTPIEQHPGKGYTWKKVQGEQGRFHWVATNDWSGTPSGQPATGVSGVFQGAKEKVWQGVEKAKEVFSTKSTDTHDPHPGKGYKWKKVEGQKGEEAHWKPKTFQGLTGTHS
Ga0326772_03702Ga0326772_03702_2_844F002256FDSADDLIENFKNDEFLQVLRTQAGIIKSDLSYVDTEGKVQVDTDMLSKLQKALIPVLADALKYIPVPRIYSCDKNREFWLDKIVLCSYDIIPENIRFHLESDSEVSFRDAEVKETQTYLVIELNRLLTELKDVEFYYKKKTFPELEDSGRVTFRVKGQGANLRLTYNVVQKPEDKVPRIMEGTASFDISDLDIIFDTSTLKHDVLVPMLTNMFKLQIKQQIEYQVENNLKGFMKNLGDMLTNSIGQTNRPFLSGLEQARKAVKSSQFGQIYEKRREKLE
Ga0326772_04485Ga0326772_04485_53_814F058597MKHAILLALVAAAAVSAHEAYPSKTYGAVLPPHEHYDCDATDGKCYAPKSYGQGYEASGYSYKRQYPYPGPKARFCAKLKRLGAFIGGIINKIIKGFKHTWVHFKKHWKEHCAIIKSDLARFEDWKTCEAKKFKDWWGYHHDLCKTRKQLWDDAMREFHRQWCHYKKTRKEEYEARKKACGIKEKDYDDDSEYGKKLNHYGVTPVEDHYNNYSSGGKYKAEEYKSSCKKRDEKYSKANNGDLGMGPGSLPEPVE
Ga0326772_05714Ga0326772_05714_368_724F043723MDKFLSLISSDDLARVLSGTFDLSQVPTDKHRSIFLMAAHCCLNGPVGTNKPTTFPLITGTTSITGFVGVRVSNNSWKAFCRDVAGVLMKSYPAIVSGSQQMAVAGGLWPLSKSISETR
Ga0326772_06704Ga0326772_06704_8_670F001895MRVSYAGPQSSTSTYKATHDSGKYAAAGRGGTYRGAVTNATGPQSAHVAFQVTEDTGKYVGASATATTGYRVAGDIAGPTSAHQEFRVTEDTGKYVGASATATTGYRVAGDIAGPTSAHQEFRVTEDTGKYVGASATSTDGYRVAGDIAGPTSAHQEFRVTEDIGKYVGASATATDGYRVAGDIAGPTSAHQEFRVTEDIGKYVGASATATDGYRVAGDIA
Ga0326772_09142Ga0326772_09142_365_577F015442MKGQSFQASERSLRGVGSEQEVLAGGLGSVDPQPSKDGGGESTKGRSGILFAKLSAGHAGGERGCDSDHLE
Ga0326772_09216Ga0326772_09216_3_530F001429LSFKDVEVKGTKTKLVIKLDHLLTEIKNVEFYYRRKVFPEIEDSGRVTFRETGAGSRLTLTYDVLQKPEDKVPRIMEGHVDFDMSHLQIEFDTKTLKHDVLIPMLTKMFKLQIQQQIEDQVEKNLKGFLDKLGDMLTSAIGQTNKPFMSGLEAARNAIKNSPMGQIHEKRKEKLE
Ga0326772_09606Ga0326772_09606_3_539F003301LALVYAQTKPVWPSAASASLLVQGWERPDDRQFLRWFFDDSAMKERFDGPTRYAGEFYFTETIIDTKSHREVTVIYQEDLLICLNRASNVSLPHPNFSTATYVGKAEIDYQIVDHWTIMANGRTLFEIYDRTTDQMIVRIDYNDPRRGHTLTYRFYEWDVGAQDPNLWNVPQDILAICV
Ga0326772_09742Ga0326772_09742_2_562F000025LLAALLAVVYGQTKPMWPTAASTSLFVHGWEHRGDRHFIRWFFDRTLGKERFDGPREYRGEMYMTTTVLNTATMREYFIIHQGSLIECYERASNATIPHPDFARAHYVGKAEIGPDVVDHWTERTPEGRDRLQIFDRVDNGMVVRTDFDDERRGHAVTFEFHEWDTGSQDPNLFVIPSTILAICNTI
Ga0326772_10022Ga0326772_10022_1_525F016913VLGDDIAAGKEETKASLQDWVKHCLDAGMKLKAHQRRLYCDLTFLSRFFVPIGTENCMIPLIGKALCRFNARANRNQDVSDAEYMAGKSLSYAYEFRHVSYLRDKFLQRFRSTGVTIDSIKLHDLTWFSRQDVSGSQDVLQAALDESLVLSDDEFLEIIMAKYDIGLYDMDYLCD
Ga0326772_10621Ga0326772_10621_31_537F093019MEPDWLKCSQAEAQRHLKRALQRARPHADMTFKEFWRVIMRRNHSFRPVSKELKSYESPFYAVYALDVPTHDADKVCLFFKIFDGATLRYVGKRFGGPGHTLRTILRDYDLNTYALFEEVHSRRLDKIESVDISMSSMELGSGDVIVLCPRGFEEDLSQHYKSLVFTSK
Ga0326772_11309Ga0326772_11309_2_445F029607MWWWEQLPSYGEFPSGAPVNLTAVPIGNHILIEGSMSCNGSYLYDTVTYTWSKLSPKTTTNDANYGSATLVGDTVYYLCGYRAHSHARDVIKLPLTSVLDFVNTGNVPDYMKESNSGEPMEEEMMGEEGKAVEVRSCSSGEGDFGIVN
Ga0326772_11844Ga0326772_11844_22_507F011727MNLNDPALVVLLLGIIATAFFVASAAETDWSHFSNDSEGAKTGPFRAESGGTAYRYNKCNAGGGINWTGSDCSKWMTIQAFVIIGLVSAAIATIVDGCAATVAWRFPGGISSMLFVLATISGIIAMSLFAWFHNNRLTGSSYGPGFAFIIIAWLFSLFAAYI
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