NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034084

3300034084: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.1



Overview

Basic Information
IMG/M Taxon OID3300034084 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0142001 | Gp0401917 | Ga0373903
Sample NameUranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size376177621
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameUranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States
TypeEngineered
TaxonomyEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oak Ridge, Tennessee
CoordinatesLat. (o)36.0103Long. (o)-84.2696Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016540Metagenome / Metatranscriptome246Y
F023141Metagenome211Y
F023250Metagenome / Metatranscriptome211N
F024002Metagenome / Metatranscriptome208Y
F034983Metagenome173Y
F038289Metagenome166Y
F040696Metagenome161Y
F043477Metagenome / Metatranscriptome156Y
F050736Metagenome / Metatranscriptome145Y
F052022Metagenome143Y
F056130Metagenome / Metatranscriptome138Y
F072813Metagenome / Metatranscriptome121Y
F072973Metagenome120Y
F074396Metagenome / Metatranscriptome119Y
F075122Metagenome119Y
F077448Metagenome117Y
F077744Metagenome / Metatranscriptome117Y
F094833Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0373903_016702All Organisms → cellular organisms → Bacteria → Proteobacteria1661Open in IMG/M
Ga0373903_021578All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1469Open in IMG/M
Ga0373903_030339All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1234Open in IMG/M
Ga0373903_045563All Organisms → cellular organisms → Archaea1003Open in IMG/M
Ga0373903_066349All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium824Open in IMG/M
Ga0373903_087368Not Available714Open in IMG/M
Ga0373903_096174All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium679Open in IMG/M
Ga0373903_102672Not Available656Open in IMG/M
Ga0373903_124260All Organisms → cellular organisms → Bacteria594Open in IMG/M
Ga0373903_131716All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota576Open in IMG/M
Ga0373903_138523All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium561Open in IMG/M
Ga0373903_139051Not Available560Open in IMG/M
Ga0373903_139191All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium560Open in IMG/M
Ga0373903_156097All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
Ga0373903_158011Not Available524Open in IMG/M
Ga0373903_165035All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0373903_016702Ga0373903_016702_910_1344F023141MREIADVLNAAEAPKAERLKAHRAFLSKREQLWKRILEGRFPETYLSVGNKKFVGAPRRTAIRCDFLLASRITLGREYMKDRISHLAQRDLLFDVLRYREVFPGRTGGKFYCCPKCTEKLYECVRSKVFHYIDNDKWKAEIEAC
Ga0373903_021578Ga0373903_021578_2_259F016540PVLTDIVEEDFGRAAPIDRTRLFLDELEAHLTIAIHEQADELVHNACREMEALLLEQVSDRLRSALPALINRIVEEHFQGPERSH
Ga0373903_030339Ga0373903_030339_842_1129F074396MGHFSVRAMYANGKPAKDVGVMIDYGWLGETDEKRTHSDGWVVFHNHGDKLGAIWIHGHNMGNDSLPNGKTYSCQYETNSDNFTFFCFCTERQIL
Ga0373903_045563Ga0373903_045563_38_577F056130MSISAIVDGQSKPLSNGTYPGSTAVIKYWLSTNFVSFEPNYESYILGNSSSVISSSTDPYGRSAIRQQAGWVTISLDYRVRTMRTAVIKVNGVDTNYVDIWVIRVSTVVSTAWSYVHDFDLLARTMSVRTASYGPYNVSTQSASISVQIGSEPAQQRSVAVVPGQAVFNVVVADVRVSV
Ga0373903_045563Ga0373903_045563_591_1001F050736MAAPTLSTVVLTGALIIVIFTVQFFYFRVVDNVWAEMVKRELKEIADYVADTIANLYFLANSTSTSSLLEKTLRLPVEIEASFFTLEIIRGQNNYAQSVKAVSMKGSWLNANAWLPPGLLVNVVKTQTIQSSGTTVV
Ga0373903_066349Ga0373903_066349_221_433F094833MKLMTKEEKILKEGLEKVSEKEDNMNWISSLAFLNSIGCSPFWAKVKLALSLAYYRTTAFFIPISKSARL
Ga0373903_087368Ga0373903_087368_1_321F072813MNSENLSAETVVETQPQEKELKSPAKGPVMKAILIKRGEFALSNSMVLPSFGVCLLGEEGTILVPGPNVLPILGVGNKDIKCSKCSYVLAMKIKREQVQNLTIKCPS
Ga0373903_096174Ga0373903_096174_314_574F077744MTHTVLRFILIEFDKNWTRAGTVLYTAVDKAQLVVVVEGVTGVKDTYLFEVARGEVVLVSWAANLVYIPAKCTKKEPGDKTVYGQG
Ga0373903_102672Ga0373903_102672_178_636F077448VAITPKPLDSKESAVIGVIKAFDRSITPGFSNWNEDSFDPQRETDSENDSKRPRVTVAPVESQFVVELEKVGHSQSLPTSDQPMGDGLIVFGSLGMKKDAMTVKIHDIEGKEAAIVLDITGAHQIGLMDIVASQGVPEIGIRHSFGGIRCFF
Ga0373903_124260Ga0373903_124260_335_592F072973IVFLLPSLSPAECTSIGAFSNFSLEGANTVVLYAGSSPVARFDILGCSVQPSSKIQLIKSDVCDGDEIMIDGSRCTMMEIKPLGP
Ga0373903_131716Ga0373903_131716_1_192F023250PPEWGFTKTEAKKPAGFCTLKEATEFAMQNLGLKQDEFKVLKGRGVDLDGNPKGKWILKVEME
Ga0373903_132128Ga0373903_132128_180_575F075122MSIETSNRTDRDPRWRLVNEHYYTQRPDPLDDWLWDQGLPQAAERVFWLHWREGMRSGDWSSQIPIKRVAQRCRVDVSTVTRAYHLLKAKGLIRRQDPGRDEANPFQQATAVTEVLVPRELLVELARAPSRR
Ga0373903_138523Ga0373903_138523_164_520F024002MAAAVALIFMTTQDRGSADLDGAHDSQMIAGQPMGFSISRAVLTENLRHLKAARWSHPFSGLRNRLGCSVERTDDLGQVQPTDMQIDGGRGGRSVAQKHLDMVETCSCFNQVGGEAVP
Ga0373903_139051Ga0373903_139051_159_560F034983LLPAERWLLALVAQGAAGVEIALDELQDADLEGLRSAPLLRAALAVARRDERVTLHAVLAELDEDARRVMSEIAVEGVPEEGLSAEDCVRVLRRQPLEARMAEIQKRLAGASGDAQDALLAEKTRLVRQMAGL
Ga0373903_139191Ga0373903_139191_168_560F040696DLGKNGSDFFNAKNGRESSLILGSEDSENVPVSLEDVFVEEANAAIADAHGIGGPVIEVLAVEEIILKVLFGDQIGGFTIELAEHADGAGVGLLSPFPLAVELKSLDRFVIPLCLHNTSPFSIRMNFPFQ
Ga0373903_156097Ga0373903_156097_239_427F038289MVRRLPDDDPDPVEPDIDANGVDRAQIRAMLELAPEERLRRVEEFVEAALEIRELNAARPVR
Ga0373903_158011Ga0373903_158011_3_425F052022LKSLKSPVRTIARSTIKVTTVSQTAVASLIDLQSDMLTSAISDAALRLERASRADNIVELVREQFEMLPATRARIVEDAQRAALIFKHAGRDLRGVATHLYERVIETAEENVPEVKVVKRKTKRAVRKTTARARKTVAAA
Ga0373903_165035Ga0373903_165035_2_430F043477AASSKRPATKSTTGSAAKSGSAAPPVSPAQMAEREDLLGRLRTRECVIALEALERKTGGTEASSATEIKRLKQTTDLNCSQDPARRRQQEEMAAKLRVANSPSCVDARNQLADMVAPGSTASRERVQAQQAFVDEHCTSPVR
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