| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300033749 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118431 | Gp0397576 | Ga0373126 |
| Sample Name | Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_01182017 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Ohio State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1553566 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → gas well → fracking liquid |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | N/A | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009252 | Metagenome | 320 | Y |
| F017447 | Metagenome / Metatranscriptome | 240 | Y |
| F021250 | Metagenome | 219 | N |
| F033698 | Metagenome / Metatranscriptome | 176 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0373126_021 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata | 12650 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0373126_021 | Ga0373126_021_7202_7468 | F017447 | MFNRVAPKISRGIGQVADVGRNIGQVVKHSRNIGSIVNQISGGRLSQSPIGQKIQDVANKIENGANFIAGNENKAQQALSTISRKFNA |
| Ga0373126_021 | Ga0373126_021_7556_8461 | F009252 | MDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFHIIIKNIDNEVIETYIYKLNDGNPNVNDVKSNLNNLLLNKVNITYDKQRNKFMFKRTLPVSTQQYKMYLKIINSEDFLGFYKSDRDIEILLPYLQNVFSNNIINILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFHYRLANVEQITWFTLTIHNQDNELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAM |
| Ga0373126_021 | Ga0373126_021_8467_9192 | F033698 | MKFFRYKQVARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSRNAKLILESVYLPCVFDNNLDVKHDTNIVLRLKNISGSNCFNSSNDNDSSPIIFSHSVQSRPEPIVRTLTTTLAGAISTYTNQSTNINYYDTGISFFNPSPDKLYNFTIPNTFTNNTVFEFEITYEMNAGDNIVLADDNELFYKFQCSLIICDVDEEELISNDSNTVDYNKFKPHFPLKKS |
| Ga0373126_021 | Ga0373126_021_9479_10372 | F021250 | MIIEENLLGWNNTPVKSKEVVYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNIIFKSLKNLDWDNDVIENYEDDLLKIKMEDLKYDLDHSKDYKLYKEAWNNFVKCKTIDDLNEDELKILYNYDFIPFKKFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEEQFKELYEYATKEPFNALVIDATRGKPIFKKNFDKVLNIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |