NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033552

3300033552: Glacier ice microbial communities from Ngari, Tibet, China - 15_GP2_131.5



Overview

Basic Information
IMG/M Taxon OID3300033552 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133511 | Gp0348939 | Ga0326734
Sample NameGlacier ice microbial communities from Ngari, Tibet, China - 15_GP2_131.5
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size346936465
Sequencing Scaffolds19
Novel Protein Genes20
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Sphingobacterium → unclassified Sphingobacterium → Sphingobacterium sp. PM2-P1-291
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameExtreme Environments Viral Communities From Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Ice → Glacier → Ice → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → glacier ice field → ice
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationChina: Ngari, Tibet
CoordinatesLat. (o)35.2833Long. (o)81.4833Alt. (m)N/ADepth (m)131
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003605Metagenome / Metatranscriptome477Y
F004905Metagenome / Metatranscriptome419Y
F009686Metagenome / Metatranscriptome314Y
F038578Metagenome / Metatranscriptome165Y
F042189Metagenome158Y
F048842Metagenome / Metatranscriptome147Y
F049646Metagenome / Metatranscriptome146Y
F052550Metagenome142Y
F058147Metagenome135Y
F059000Metagenome134Y
F070121Metagenome123Y
F102809Metagenome / Metatranscriptome101Y
F104558Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0326734_1000003All Organisms → cellular organisms → Bacteria92043Open in IMG/M
Ga0326734_1000069All Organisms → cellular organisms → Bacteria36640Open in IMG/M
Ga0326734_1000414All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes11789Open in IMG/M
Ga0326734_1004721All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3732Open in IMG/M
Ga0326734_1005368All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3524Open in IMG/M
Ga0326734_1015191All Organisms → cellular organisms → Bacteria → Proteobacteria2204Open in IMG/M
Ga0326734_1015519Not Available2181Open in IMG/M
Ga0326734_1056811All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1111Open in IMG/M
Ga0326734_1059072All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Sphingobacterium → unclassified Sphingobacterium → Sphingobacterium sp. PM2-P1-291085Open in IMG/M
Ga0326734_1065574All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1019Open in IMG/M
Ga0326734_1082484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales888Open in IMG/M
Ga0326734_1085503All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium868Open in IMG/M
Ga0326734_1088093All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes852Open in IMG/M
Ga0326734_1121447All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes693Open in IMG/M
Ga0326734_1148501All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium605Open in IMG/M
Ga0326734_1167025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales557Open in IMG/M
Ga0326734_1171921All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes546Open in IMG/M
Ga0326734_1181205Not Available526Open in IMG/M
Ga0326734_1189324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0326734_1000003Ga0326734_100000371F048842MKKSITVILITFLLSAAALIGEVCCIYKMCTCNWEPIGKAEIFYTVGTFTGAGCIIGYINIEDK
Ga0326734_1000069Ga0326734_100006947F070121MKKKQSPLTRINRIMEFLRKRGNNKESVNEVYRNVLKARNES
Ga0326734_1000414Ga0326734_100041415F003605MAVGDAAAQQNYPLVPDTGEDGKVKWGARELNRTRDFIANLKAGQPVGRGGYRTAAGITNGTSDPSPTYGLDGDIYLKVLS
Ga0326734_1004721Ga0326734_10047212F104558VHAPAWPDEPAFHAADPRRRTSAELDLGATWRWAGSNDAWRLAWLRDTGELVLCRADGYDGTCTDVSVLVRLDHERDVDALLEGWQERRTDPDGLAWVLRRTGPLAA
Ga0326734_1005368Ga0326734_10053681F003605MAIGDDALDSGFVLVPDTGEEGRVRWGAREINRTRDYIAVGLRGIPVGRKAFRDAAGVTSGTVDPGATYGLNGDIYFKTL
Ga0326734_1015191Ga0326734_10151915F009686MFEASFKRPTDYFKLSSDHQWAIDSRLGILDWSGEGLSEEDIARFKAHYTRKRNKNVS
Ga0326734_1015519Ga0326734_10155193F058147MNRQNIIVFIKGERVETYGNLKKCCEAEGLKYWTLSRLSFPIRLDNVIIHKTLFK
Ga0326734_1038507Ga0326734_10385071F102809MIEHWRYRLGEVNKTHSAPHRDRRFPVDRKKNYVRYSNFHQVRRNKRLNMIWTNWWCRDQNFRKYFELRKRHGIRPSLTGFYHEKIYTDVAQKNKELAQIRHSRAAL
Ga0326734_1056811Ga0326734_10568112F104558VHAPTWPDETAFHAANPRRRTSAEVDLGATWRWAGSNDAWRLSWLRDTGELVLCRADGYDGTCTDVSVLARLHREPEVDQLLEGWRERRTDPDGLAWLLRRTEPLAA
Ga0326734_1059072Ga0326734_10590722F049646MEKENINEPLNPAFLVGAVISSCDCLVGFLSGERVSKSEIEFEVKSISNMHPKYKEYGMLKGEPLTPKQIVDNRRGYLSRFAYCPYCGEKLDWKQVLSNCL
Ga0326734_1065574Ga0326734_10655741F004905LRSWFKRDRLQDVVTRPVYRSDFNWTNYATRAQVRCLLGLLVIRELPIKNFYIRCWIAYAWIIYFVVRGLGRGLKFSRPIVMYNHALQAKSLMNYPDLFFWNTTKILPKNPPIPDAHREWRTRQTPVYHQYHKNAYRYKLRKPRYVPWDGSMNQPIMPYMVDIGSEVINGTFKRNVNTVPQLK
Ga0326734_1082484Ga0326734_10824842F042189VADLYEVLIVDGGTRWHAGFLVDDESETDVLLRDGAVVPLFASRASLEHHLQGTRHALQDDLPDEVDLDLGGWLATGAPVPSTGEVSELWHVLVDDPVAGPALSGEQLGEVYDDLVEDEPDWFATHGPAARRALSESVR
Ga0326734_1085503Ga0326734_10855031F058147IIVLIQCERVETYGNLKKCCDIEQLPYHTLARLKFPITYKDIVLHKTLFK
Ga0326734_1088093Ga0326734_10880932F003605MAIGDDATQAGYPLVPDTGEEGRVRWGARELNRTRDIIALVKKLIPVGITGFQNSSGITSGTSDPVNSDGKPNGTIYFKII
Ga0326734_1121447Ga0326734_11214472F003605MAIGDNAVSAGFPLVPDTGEEGRVRHGSRELNRTRDFIAQVKALIPVGKPAYRSAAGITSGTAAPTGGSDGDLYFQIIP
Ga0326734_1148501Ga0326734_11485011F052550MKTTIDNNRRVYHVTTSVRHQFFCNIEDLNEICKDMNQGYFKIYHFWNNKAQRVSKKDLKSFFEGSDLKQEFFY
Ga0326734_1167025Ga0326734_11670252F038578MSEELVVLRGGSRDGESTRVQDGVRRILAASDAPGLLDVYEANGETAELAGNDELALVMIHVGQEPAGDDPGLPRDHE
Ga0326734_1171921Ga0326734_11719212F003605MAIGDDAVRASYSLVPDTGEDGKVKWGAREINRTRDYIALVKKLIPTSNAAYRTKTGILQGTAAPAATLGTDGDIYLQIL
Ga0326734_1181205Ga0326734_11812051F059000MTSEATGAPKMLLRSRYAVTEVGYFPHKQYMTMYVTDTKNILA
Ga0326734_1189324Ga0326734_11893241F042189WHAGWVADDEQETDLLLRKGDRIPVFASRPALEHHAQERGLTLLDDLPDEIDLDLGGWLSRGEPVPPAAEVSELWHLLYDDPQAGKALAGEELGEAYDDLVEDDPDWFDHHGVAARRALGEAVRRLRPLLDRD
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