NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033428

3300033428: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_27_06-R3



Overview

Basic Information
IMG/M Taxon OID3300033428 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356212 | Ga0334896
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_27_06-R3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size313967884
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0091
All Organisms → cellular organisms → Bacteria1
Not Available3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031354Metagenome / Metatranscriptome182Y
F055749Metagenome / Metatranscriptome138N
F061390Metagenome / Metatranscriptome132Y
F066219Metagenome / Metatranscriptome127Y
F070092Metagenome123N
F079824Metagenome / Metatranscriptome115N
F080090Metagenome / Metatranscriptome115Y
F089495Metagenome / Metatranscriptome109N
F093482Metagenome106N
F103496Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334896_1010821All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0093530Open in IMG/M
Ga0334896_1015281All Organisms → cellular organisms → Bacteria2618Open in IMG/M
Ga0334896_1017929Not Available2284Open in IMG/M
Ga0334896_1020583All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium2032Open in IMG/M
Ga0334896_1026324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium1663Open in IMG/M
Ga0334896_1030234All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii1483Open in IMG/M
Ga0334896_1041774All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1146Open in IMG/M
Ga0334896_1053124Not Available949Open in IMG/M
Ga0334896_1056696Not Available901Open in IMG/M
Ga0334896_1075290All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium724Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334896_1010821Ga0334896_10108217F055749MNLIMIIAVGILTLVAIITVGPVVGGSIELAMPEVAADSPWNASTNDNLPEGAATWAQLIPLVVLAVLALIIGLVIMYFRNAAR
Ga0334896_1015281Ga0334896_10152815F031354MKTTFDISDILYPIINVTSVTGTIDGRVYRDKKPLNSELQDIVIIPLTNYNGDEIIQFPVYMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFEITNQTLMQDTDQISMS
Ga0334896_1017929Ga0334896_10179293F066219MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHALYGPILSLSYPIFSAYSILKTGNQWDANPWELQAIRISDTSKPVWEPSFVIELE
Ga0334896_1020583Ga0334896_10205831F061390LEKTTGREGAVGMVTISNKEAERLDRLVAQFGQRTVMEALEAKMMGGWSVTYFPDVDSWEVSDYGDRNFVIKDGGKCNCGKGFGKNGSCIHQ
Ga0334896_1026324Ga0334896_10263242F079824MIYGFFGSIPGSPHNRGNHALRGNGKTICLTFTGYLDYLNGRRVISNYKTVFSEYIPIQEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSPCSVDRCEKVHIIYLYMHDPYQYEPIAHIRADVVGQLYDSNEIVAVPPKRVRKRKKKEDE
Ga0334896_1030234Ga0334896_10302343F080090FQELSCLLEKWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
Ga0334896_1041774Ga0334896_10417743F103496MSINDSVRQMPLTKLIALCFTVFVCVLIVLDVTTLCPLTERSADLVKWLGSTIIVGYFGKSAYEHGVNIKKSDQS
Ga0334896_1053124Ga0334896_10531242F089495MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFS
Ga0334896_1056696Ga0334896_10566962F070092HDPDLRSENMAINDRLKPVMELLETNKQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334896_1075290Ga0334896_10752901F093482VEERTLDELWERIEKEDPVLWAQMEKFYGPMSKKILLMKWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLL
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