NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033171

3300033171: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_05-R3



Overview

Basic Information
IMG/M Taxon OID3300033171 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356211 | Ga0334895
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_05-R3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size438356150
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0091
All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.1
Not Available12
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000388Metagenome / Metatranscriptome1201Y
F005744Metagenome / Metatranscriptome391Y
F022008Metagenome / Metatranscriptome216Y
F025315Metagenome202Y
F031354Metagenome / Metatranscriptome182Y
F051532Metagenome / Metatranscriptome144Y
F055749Metagenome / Metatranscriptome138N
F066219Metagenome / Metatranscriptome127Y
F069687Metagenome123Y
F070092Metagenome123N
F080659Metagenome115Y
F089495Metagenome / Metatranscriptome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334895_1012792All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0094341Open in IMG/M
Ga0334895_1015931All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.3655Open in IMG/M
Ga0334895_1019147Not Available3160Open in IMG/M
Ga0334895_1030430All Organisms → Viruses → Predicted Viral2176Open in IMG/M
Ga0334895_1063661Not Available1176Open in IMG/M
Ga0334895_1068878Not Available1099Open in IMG/M
Ga0334895_1080257Not Available959Open in IMG/M
Ga0334895_1085506Not Available907Open in IMG/M
Ga0334895_1094132Not Available833Open in IMG/M
Ga0334895_1129061Not Available630Open in IMG/M
Ga0334895_1129886Not Available626Open in IMG/M
Ga0334895_1136084Not Available600Open in IMG/M
Ga0334895_1136988Not Available597Open in IMG/M
Ga0334895_1145715All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium565Open in IMG/M
Ga0334895_1146829All Organisms → cellular organisms → Bacteria → Terrabacteria group561Open in IMG/M
Ga0334895_1150654Not Available548Open in IMG/M
Ga0334895_1161316Not Available516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334895_1012792Ga0334895_10127927F055749MAKRAENPMNLIMIIAVGILTLTAIITVGPVVGGSIELAMPEVAADSPWNATTNDNLPEGAATWTQLIPLVVLAVLALIIGLVIMYFRNAAR
Ga0334895_1015931Ga0334895_10159313F066219MKKLLVIVLLIALSSLSFANIIEFFESIPPIVKFGIEAGIGIYGLAWAYPWFFDPIVIVGETDFGAFCFGPFIVINPYLWSEAPESSRNIVLNHEYVHYIQHALFGPILSLSYPIFSAYSILKTGNQWDANPWELQAIRISDTSKPDWEPSFVVELD
Ga0334895_1019147Ga0334895_10191476F089495MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGSGMTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITAL
Ga0334895_1030430Ga0334895_10304303F000388MKVINVTKEYFQTEDEKVYFFEPLEKEISAEDMQKIVDANEKLVKELKDGSK
Ga0334895_1063661Ga0334895_10636611F031354MKTTFDISDILYPIINVTSVTSTIDGRVYRDKKPLNSELQDIIVIPLSNFNGDEVIQEATFMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFDITNQTVMQDTDQISMSYVNLRI
Ga0334895_1068878Ga0334895_10688781F022008GISMTVNEIEVLQEALTELSKQVKSLSDDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIIVKMLGE
Ga0334895_1080257Ga0334895_10802572F022008MCKPCIERGIAMTVSEIEMLREALSDLSKQVQALSDDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIIVKMLGE
Ga0334895_1085506Ga0334895_10855061F066219MKKMLVIVLVIAVTSLSFANLVEFFDSIPPALKFGTGAVIGIYGLSWAYPWFFDPIVIVGDTEFGAFCFGPFIVISPYLWNEASEDSRNIVLNHEYVHYIQHAIYGPILSLSYPILAAYSTLKTGNQWDANLWELQAIELSDSSKPAWEPSFVIELE
Ga0334895_1094132Ga0334895_10941321F051532EDIMKILTCYSARFYGRRGGRKKKNTAENEPIESNGI
Ga0334895_1129061Ga0334895_11290611F022008MTMTEIEALREVLNDLSKQLRTLSDESRTSFGRIYDRLTKIETQMSEREYQFNRYEKTIENHEMRIRTVEGELGALRDVPEKLWKVSMSNSKLTGMVAAAGGMG
Ga0334895_1129886Ga0334895_11298861F070092MAINDRLKPVMELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVSELRNRGLDEEADLTWDYAYNKLKVDR
Ga0334895_1136084Ga0334895_11360841F031354YRQYTGSNKVTKTEGKGIWLMKTTFDISDILYPIINVTSVTGTIDGRVYRDKKPLNSELQDIVIIPLTNYNGDEIIQFPVYMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFEITNQTLMQDTDQISMSYVNLRINCYIEK
Ga0334895_1136988Ga0334895_11369882F069687LAEKIGKILDQFAQEELGNRLSQFAMISLKEMIKNGIQNYKPKGDDRSDKK
Ga0334895_1145715Ga0334895_11457152F080659MTGIPILDAILNLIMEWRLGIAIMGLAVIALGLLMRPIAPEWSGHNRPAIAMMIMGGVMLTILPTLANAIIGS
Ga0334895_1146829Ga0334895_11468291F025315KVIPSLVIIPVIWYFTYAPIHELSHAAGTYLVGGKVIAYRLIPRFWLGEFSGAWATPGGFTQSWQQLTSSAFPYLLDIVCLVVAIFVLRRRFSRNPFLAGLVFMLVCLRPAFDIVGESIGFLTGWRGDLYFIQLIAGSFALWSLILLSIGLSGYLISSTMRHVISFSKHEISQNTI
Ga0334895_1150654Ga0334895_11506541F066219IANIMEFFESIPPVIKYAVGTAITVYAVSWAYSWFFDPIMVVADTTYGAYTFGPVIVVSPDIYHHEQETVLNHVLNHEYVHYVQHAIYGPILSLTYPIFYWYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSFVIELE
Ga0334895_1161316Ga0334895_11613161F005744GAPDGPPEQALYRIQQTYPDGSGGRLNVDWDGLRRLHGLIHDRIALEGYACETCDTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE
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