NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033167

3300033167: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_3_08-R3



Overview

Basic Information
IMG/M Taxon OID3300033167 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356214 | Ga0334898
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_3_08-R3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size390259283
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → Viruses → Predicted Viral1
Not Available7
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0091

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F039153Metagenome / Metatranscriptome164Y
F055749Metagenome / Metatranscriptome138N
F066219Metagenome / Metatranscriptome127Y
F071725Metagenome122N
F076577Metagenome118N
F089495Metagenome / Metatranscriptome109N
F103496Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334898_1006843All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales7076Open in IMG/M
Ga0334898_1030612All Organisms → Viruses → Predicted Viral1879Open in IMG/M
Ga0334898_1039408Not Available1485Open in IMG/M
Ga0334898_1049550Not Available1206Open in IMG/M
Ga0334898_1055133All Organisms → cellular organisms → Bacteria1093Open in IMG/M
Ga0334898_1059847Not Available1012Open in IMG/M
Ga0334898_1063911All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009953Open in IMG/M
Ga0334898_1074903Not Available823Open in IMG/M
Ga0334898_1075024Not Available821Open in IMG/M
Ga0334898_1090648Not Available690Open in IMG/M
Ga0334898_1122823Not Available525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334898_1006843Ga0334898_10068431F039153MLYSVITPEREKKYHTEVKFFNNSHGARRLNFSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDRPKESELLVVDLIQIIANGQAYLVAIDTLGPSENHLHFILEEHAKLRKAIYVTAECLDDVICEIKDNEHNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERS
Ga0334898_1030612Ga0334898_10306123F089495MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVATGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITAL
Ga0334898_1039408Ga0334898_10394082F103496VIEMPFADGVRRLPLTKLIALWFTMFVCVIIILDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHGVNIKKSDQS
Ga0334898_1049550Ga0334898_10495502F089495MGRPYLRKKHVTISLYDGTSTTPYTESITGYADVPELPEPVVDAPAEGYSPQGVFNSIEEGDDTITLPEFSITLDINDADVASGKYALDQWFNNHKESSGATALVSTNDGSAYLKKAIDGTTVSANLATDWFTIGMKVIFDTGGTGKAFGKNYKYVRPISASFSTSNKAQVTLRAQIVGAPTDITS
Ga0334898_1055133Ga0334898_10551332F022008MCKPCIEGGISMTVNEIEVLQEALTELSKQVKSLSDDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIIVKMLGE
Ga0334898_1059847Ga0334898_10598473F103496MSINDSVRQMPLTKLIALCFTVFVCVLIVLDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHNVNVKKGEKS
Ga0334898_1063911Ga0334898_10639113F055749MAKRAENPMNLIMIISVGILTLTAIITVGPVVGGSIELAMPEVAADSPWNPSTNDNLPEGAATWTQLIPLVVLAVLALIIGLVIMYFRNAAR
Ga0334898_1074903Ga0334898_10749032F066219MKKLLAIVLVIVIGSVSIANIVEFFEEIPPAVKYAVGTVITVYAVSWAYSWFFDPIVIVAGTTYGAFNFGPFIVVNPDIFHHEQETVLNHVLNHEYVHYVQHAIYGPILSLTYPIFYWYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSFVIELE
Ga0334898_1075024Ga0334898_10750241F022008MCIPCIERGMAMTVTEIEMLREALMDLSKQVQALSEDSRTSFGRIYDRLTTIETQMSERECQFRKFEKALENHETRIRSVEGELGTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLI
Ga0334898_1090648Ga0334898_10906482F076577MFWPESKVISLMEIAFHFGAISYAPSNGKKRREMWKEFKENAIDKRLKYVNPDRRCGHPVNLDTLDYCWGYAHKIDKGEEIGMEELCEGCEFFREEVKNENPTQ
Ga0334898_1090648Ga0334898_10906483F071725MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKWERKEINKVGLFHELE
Ga0334898_1122823Ga0334898_11228231F066219KLLAIVLVIVIGSMSIANIVEFFESIPPAVKYAVGTVITVYAVSWAYSWFFDPIMVVADTTYGAYTFGPVIVVSPDIYHHEMETVFNHVLNHEYVHYVQHAVYGPILSLTYPIFCWYSTIKTGNQWDANYWELQAIELSDISSPAWEPSFVIELE
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