NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300032139

3300032139: Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB



Overview

Basic Information
IMG/M Taxon OID3300032139 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0135940 | Gp0344165 | Ga0316580
Sample NameRhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size583212426
Sequencing Scaffolds29
Novel Protein Genes30
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 31
All Organisms → cellular organisms → Bacteria2
Not Available6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Candidatus Glomeribacter → Candidatus Glomeribacter gigasporarum → Candidatus Glomeribacter gigasporarum BEG341
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Alabama
CoordinatesLat. (o)30.2619Long. (o)-88.2383Alt. (m)N/ADepth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001196Metagenome / Metatranscriptome749Y
F001490Metagenome / Metatranscriptome685Y
F003207Metagenome / Metatranscriptome501Y
F005366Metagenome / Metatranscriptome403Y
F015111Metagenome / Metatranscriptome257Y
F020004Metagenome / Metatranscriptome226Y
F024115Metagenome / Metatranscriptome207Y
F026568Metagenome / Metatranscriptome197Y
F029006Metagenome189Y
F032661Metagenome179Y
F034932Metagenome / Metatranscriptome173Y
F036103Metagenome / Metatranscriptome170Y
F040161Metagenome162Y
F041174Metagenome / Metatranscriptome160Y
F043477Metagenome / Metatranscriptome156Y
F049002Metagenome / Metatranscriptome147Y
F053306Metagenome / Metatranscriptome141Y
F055469Metagenome / Metatranscriptome138Y
F060598Metagenome / Metatranscriptome132Y
F070129Metagenome123N
F076272Metagenome / Metatranscriptome118Y
F077315Metagenome / Metatranscriptome117Y
F085223Metagenome / Metatranscriptome111Y
F089062Metagenome / Metatranscriptome109Y
F091904Metagenome / Metatranscriptome107Y
F105198Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0316580_10001966All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5545Open in IMG/M
Ga0316580_10002254All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi5273Open in IMG/M
Ga0316580_10010874All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2758Open in IMG/M
Ga0316580_10013209All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae2516Open in IMG/M
Ga0316580_10018429All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes2147Open in IMG/M
Ga0316580_10030591All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1667Open in IMG/M
Ga0316580_10035922All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1534Open in IMG/M
Ga0316580_10036231All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae1527Open in IMG/M
Ga0316580_10048675All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 31306Open in IMG/M
Ga0316580_10054806All Organisms → cellular organisms → Bacteria1227Open in IMG/M
Ga0316580_10060650Not Available1161Open in IMG/M
Ga0316580_10064004All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans1128Open in IMG/M
Ga0316580_10079447All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1003Open in IMG/M
Ga0316580_10081403Not Available990Open in IMG/M
Ga0316580_10097348All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon901Open in IMG/M
Ga0316580_10099370All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium891Open in IMG/M
Ga0316580_10115264All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus822Open in IMG/M
Ga0316580_10144004All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia731Open in IMG/M
Ga0316580_10165494Not Available679Open in IMG/M
Ga0316580_10166255Not Available678Open in IMG/M
Ga0316580_10168047All Organisms → cellular organisms → Bacteria674Open in IMG/M
Ga0316580_10169037All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi672Open in IMG/M
Ga0316580_10182347All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria646Open in IMG/M
Ga0316580_10214783Not Available593Open in IMG/M
Ga0316580_10229866All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Candidatus Glomeribacter → Candidatus Glomeribacter gigasporarum → Candidatus Glomeribacter gigasporarum BEG34573Open in IMG/M
Ga0316580_10235235All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium566Open in IMG/M
Ga0316580_10238358Not Available562Open in IMG/M
Ga0316580_10282463All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium515Open in IMG/M
Ga0316580_10291276All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0316580_10001966Ga0316580_100019664F001196MRRKLATAIVLGSWLALASGAASAGGVRTQFGNGAFGLPWNASKSSIQSKYPGGQWSTDANGQELYCVSSKQTLLKLPAPHQTRELCFAIGADGTLGSVTAHMNASLASLLAVVNRSRTTFGDFYAVLRDEAAIQSRSTAMLWTKDTPLLVKVSSTNDADGSPVAVSFTISDEAAVHSAGATAVSNVPKAP
Ga0316580_10002254Ga0316580_100022541F005366MYPLTLQAAIMRHMLNLARQLASGDLLESREKLEEYPLCGDPAVFDEIMRFRAVQSRMWGNKVDDTINDPWRWSAYISHCAVRWMRDPHKWTREDTDEFYDAMIETAAICAA
Ga0316580_10010874Ga0316580_100108741F026568ICDPFYHYTRGVLYFDEERFSFTAYRMPYQELDSKTWESEQAFTADYRRMVARKYSIGDKLSH
Ga0316580_10013209Ga0316580_100132092F034932MTRIRIEGDSPNLIAGFVVGVEWVNDSAITVVDLDYSGRTPFVVLDDQDGTGEDEDLRLTINGFEAKE
Ga0316580_10018429Ga0316580_100184291F070129AAGQGTTPVEGARMQIDMTTEALLCAIKSDVRQRVETIVDHAERTALMLDSEQQVEQVLELALLRVEEAIAEAARAMAREIHRDRAP
Ga0316580_10030591Ga0316580_100305912F001490YTMAMKRATTAQILHRIGQIKHMEPGKLCVMRQGPNGAYYNLQWREEGQAISRYVPSDQVETVAQNTAHYEQFQALVAQYAQLIIEQTRAERAGGIKKKTSPPKSSWPKTRKSSS
Ga0316580_10035922Ga0316580_100359221F049002MAKSNLDKVQAELTRAIENDAPCTFDEPIPVQVTLDNGVKYDGLAIKAQPKSTVFPRGLVMVRTGNTDIGVPVDYIRGR
Ga0316580_10036231Ga0316580_100362312F034932MTRIRIESDSPDLIAGFVAGVEWVNDSAITVVDLDHSEPTAFVVLDDQDGTGEDEDLRLTINGFEAKE
Ga0316580_10048675Ga0316580_100486751F076272LLREWDEAQASTDVMGYVGTRLLADRDEPGRYLILAEFAEVDGDLTPAEEAERNNQREATQRWAEKLRAMADDEPSWAHFDELYRTGLTGNLRTG
Ga0316580_10054806Ga0316580_100548062F053306MDFFPKFREEFLCAALAALSLTACGQPKPISYESLVWVNKYYIEHPVATLNATAGGWLFRGAKEAGMNIRIGFLIPEPMMSDLERRQAVLNSICPAKTESIWQVLTPEQFLVIDVWTDDNKFKDSTIC
Ga0316580_10058280Ga0316580_100582801F029006MNKIIITLMAIYFVGDPHLQYLAWLGDLKLYVVAAALALV
Ga0316580_10060650Ga0316580_100606501F060598LRATPAEDAVKFYQASAQLEVQAPGEGVRRISLDGHNLPRWSRIVDLVKGKIGNTGRILKAEELVLAYDLDAHLWVGLRTYHGTKKLSKGLVEIVRELLKHRGALKGLLRLFFDKGGYGGQIFLALSEEPRVHFYVPAVRYPSNVTQWEQLQDSDFDTAPFTLDKHADWPVAQRPTYRLADTEMTLNVWEENKIVDTVTLRAVVLHNPQGEKPAERWPVVLLTDDDQINARALLNEYGDHWGQETAHRIGKHDLYLDVVPPGYTLKTRRDDQGQLQREIEFDQTAFFLSAWLHCLVFNLMSRFAQMLGGEYTKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDKLQPLLDKLNAKRTALPWLNGLVVQFSIAQNEPLHPLT
Ga0316580_10064004Ga0316580_100640043F015111LVSAVVLLFLVALLFTALNQQRFDVDVGLLKFEVSSGLALTIAFAGGVLAGALWRSNWIARLLAERGRLRNALRLAESRPGSMPPPQTSADTDAPN
Ga0316580_10079447Ga0316580_100794471F043477SSSSRASPAQAASRSEVLANLRVRECVIALEALERLTSGAEPTSASELNRLQQTVSRNCSSDPGRRREEEEMAARLRVANGPDCATARQRLAQMMQAGADVGREQLRSQQQFVSESCTPPVR
Ga0316580_10081403Ga0316580_100814032F055469KRTVVILAAAAFFWGAVPTQTAQARDDIWDLMNPSWWADQIFDDDHDDWWYYRHHAYSPYLGAPYVQRPRVIVIQPPETLAQNPETRAPE
Ga0316580_10097348Ga0316580_100973483F036103LKNLNYIIFAIGIATCLIGAYIIAFGEPIVGPDHTGIATIIGITGIGIISTANTTLLGRKREANRQ
Ga0316580_10099370Ga0316580_100993701F032661MSERRQVKRRRYKAHTYFPAINHRGEFIMSERRLLPTRRQFDIFVDSTDLRAMFPD
Ga0316580_10115264Ga0316580_101152641F005366MYPLTLQAAIMRHMLNLARQLASGDLLESREKLEEYPLCGDPAVFDEIMRFRAVQSRMWGNKVDDTINDPWRWSAYISHCAVRWMRDPHKWTREDTDEFYDAMIETAAICAAAAESI
Ga0316580_10144004Ga0316580_101440041F020004CPFCKSSSAAGCNHLAVAVEGRDFVRRCVELCQGEKQWRALCEWRRRQRLATGEWSPEQEDYTWLETAFCEEFLKRLTWFGTMEYEWRAGPKSKQGGFWVLLWSKDPRQLWWELRDEFERQTLQAWPARPPGRKSGGRAPKSEARSTKSEARSLKSVGRSRDSLPL
Ga0316580_10165494Ga0316580_101654942F029006QQVVTERIMNKVIIALMAIYFIGDPGLQYLAWLGELKVYIVAAAIALVSMPWIASQLDG
Ga0316580_10166255Ga0316580_101662551F077315MVICKASTLFLSRIACSQVWALLLLFGLLIPAQAAEAVKPDALPQAQATLERLEQQLASAQAPTAQELKALKKEIATVRTIAQDCVQQAEPKIEMLGSELAILQPETPKDTQAKTAAETQPAEQPQAPVSPAIARQLQDLQSRKASLEGRIAT
Ga0316580_10168047Ga0316580_101680472F041174TRESTGRLESGRLDFFQGRSRSRVTVVVTADGRRVNVPLRDLDPQGVSPLALLRSLLVGLEGLLGLLITGSRRENGGTRRNGRR
Ga0316580_10169037Ga0316580_101690371F085223ALIRQVEIADSLNWGCLATGHDVDCPRLLHFTHHDSYVRWAKHFNGTKSPVTILRVRCLDCGAVFSVQPSFIIRYKRYETDAVEKLMTLLFITEDSYRMAGVSQGLGMDTQQAGTWVALEQSEAIQPRALWALVQWFGQLSPAQLNLALGVEPPQYILEDEKHVKECGEKAYVPMVYTPKDALIWWVDYLHSASEEALGASLERFKTLSDRLEHILGATVDGWE
Ga0316580_10182347Ga0316580_101823471F024115NQWRQQAAAHGLEAAQEGDRSAAEAWVDRALRESQCELHEARNYLASGATRQYVRRPEYVETFVDKLYAGGAEGIEVCESDALGFRFAHYLLVTLPHDSAKHDQLIADAESLVRRDAVVYRGVTSEEVENIVRTSTLVGTRRVLVDLPVEAD
Ga0316580_10214783Ga0316580_102147831F003207MPDTGRFIAWSKQEQSTLLQQLELLESGKVRTGEDQGDGWVDTTDQSINRIKKRLAELEELLTEAGSGTASKPGER
Ga0316580_10229866Ga0316580_102298661F034932MRRIRIEGDSPDLLAGFVTGVEWVNDSAITVVELDYSGQPAFVVLEDQDGSAEDEDLRLTVNGIEAKE
Ga0316580_10235235Ga0316580_102352351F040161ATSWTTAEGLGRGAGLVVRLDVARRLSALVLLVDLDESPLAVPWAVSLEDGTILAEGPIRFGLQWLNGTPRAGKQALLVVPLGGRDMSELRLVFQGPGPRLTIAEVFAYGPDEVEQPDAGSVAAASAYEAVRAGDWDEAVQLYADAVRAAPERASHHAAWTRARWRAGGRRWLDVESLDDGGPEFVKR
Ga0316580_10238358Ga0316580_102383581F091904PTAPSRSTRRRNSTERFIERFEALTGFHVGSDSTQALPKEFLEKTVPAPEILLREHGHELELRTRNALCRFEPGRPHEGWTYGRLLEIRGFGVFSLIDLLEALAKRPPRMWAPADMNQD
Ga0316580_10282463Ga0316580_102824632F089062MTWETIRNLIHDEWVILSLLLLWSIAGVAVICERFYALWGVLPKSELFKNRV
Ga0316580_10291276Ga0316580_102912761F105198MKNVFLALCLVLFAGQASAYFTWGVGSETCNFYVSAKAEYDHARDRRTHLAHLNWIKGFITGINWSRESDIARDLSIETVDQWIDAYCRANLDAS
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