| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031836 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133511 | Gp0321473 | Ga0307486 |
| Sample Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 0.2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 313518919 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Extreme Environments Viral Communities From Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → area of sea ice → brine |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 71.2944 | Long. (o) | -156.7154 | Alt. (m) | N/A | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F034190 | Metagenome / Metatranscriptome | 175 | Y |
| F078533 | Metagenome / Metatranscriptome | 116 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307486_1000376 | Not Available | 42473 | Open in IMG/M |
| Ga0307486_1089563 | Not Available | 674 | Open in IMG/M |
| Ga0307486_1093320 | Not Available | 646 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307486_1000376 | Ga0307486_10003761 | F078533 | MTPQEFKDARQSLGFSCAGLAREWSMGKNGDRTIRRWEAGDVPVNPIAAYCLHRMLYRNA |
| Ga0307486_1089563 | Ga0307486_10895631 | F034190 | LLTIPPERIVPTPLHLFLGIGNRIILEAFSELFGQECLQSALTSITTIHSAGCGGKSDLYDLNGPEISKFIKKECSTDILAAAGATTTITDSMKASHSLFSRWLQQLHHSLLHSGDWTPAHIDAWRTAVDDIQQHWQSEAHSKPFPKLHMLRHTVEFAERHRFLGRASESQTESCHATLNALFHKQHRNQSHNVSERLRRCLADASLRAVQPFLQQ |
| Ga0307486_1093320 | Ga0307486_10933201 | F034190 | GASDLRDLNGPEISKFIKKECSMSALAAAGALSPVADSTKASHSVLSRWLQQLHHSLLRSGDWTADDIDTWRSVVDDIQQHWQSEAHSAPFPKLHMLRHSIDFAERHRFLGRASEAQIESYHASFNALFHKQHRNMSSNTAERLRRSLADAALHAVQPFVQQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |