Sample 3300031741

Basic Information
IMG/M Taxon OID	3300031741 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0323909 \| Ga0307988
Sample Name	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #183
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300031741 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114820 | Gp0323909 | Ga0307988

Sample Name

Marine microbial communities from Ellis Fjord, Antarctic Ocean - #183

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	295045072
Sequencing Scaffolds	35
Novel Protein Genes	37
Associated Families	21

Dataset Contents

Total Genome Size

295045072

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	25
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Ecosystem Assignment (GOLD)

Name

Saline Lake Microbial Communities From Various Lakes In Antarctica

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Southern Ocean
Coordinates	Lat. (^o)	-68.5958	Long. (^o)	78.1913	Alt. (m)	N/A	Depth (m)	45
Location on Map

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Location Information

Location

Southern Ocean

Coordinates

Lat. (^o)

-68.5958

Long. (^o)

78.1913

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007693	Metagenome / Metatranscriptome	346	Y
F009178	Metagenome	322	Y
F014671	Metagenome	261	Y
F017670	Metagenome / Metatranscriptome	239	Y
F018936	Metagenome / Metatranscriptome	232	Y
F029620	Metagenome	187	N
F031722	Metagenome	181	N
F036294	Metagenome / Metatranscriptome	170	Y
F041711	Metagenome / Metatranscriptome	159	N
F042665	Metagenome	157	N
F043706	Metagenome	155	Y
F050579	Metagenome / Metatranscriptome	145	Y
F052275	Metagenome / Metatranscriptome	143	Y
F052986	Metagenome	141	Y
F056620	Metagenome / Metatranscriptome	137	Y
F059346	Metagenome	134	Y
F060609	Metagenome / Metatranscriptome	132	Y
F066663	Metagenome	126	Y
F067269	Metagenome	125	N
F069498	Metagenome	124	Y
F096357	Metagenome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307988_1004288	All Organisms → cellular organisms → Bacteria → Proteobacteria	6321	Open in IMG/M
Ga0307988_1016370	Not Available	2528	Open in IMG/M
Ga0307988_1019765	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2204	Open in IMG/M
Ga0307988_1029410	All Organisms → Viruses → Predicted Viral	1660	Open in IMG/M
Ga0307988_1030302	Not Available	1625	Open in IMG/M
Ga0307988_1032895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1528	Open in IMG/M
Ga0307988_1038781	Not Available	1343	Open in IMG/M
Ga0307988_1052481	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1066	Open in IMG/M
Ga0307988_1053054	All Organisms → Viruses → Predicted Viral	1056	Open in IMG/M
Ga0307988_1055204	Not Available	1025	Open in IMG/M
Ga0307988_1060037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	958	Open in IMG/M
Ga0307988_1060928	Not Available	947	Open in IMG/M
Ga0307988_1061383	Not Available	941	Open in IMG/M
Ga0307988_1071058	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	837	Open in IMG/M
Ga0307988_1075189	Not Available	799	Open in IMG/M
Ga0307988_1084685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	724	Open in IMG/M
Ga0307988_1086063	Not Available	715	Open in IMG/M
Ga0307988_1092178	Not Available	675	Open in IMG/M
Ga0307988_1093033	Not Available	670	Open in IMG/M
Ga0307988_1097733	Not Available	644	Open in IMG/M
Ga0307988_1101363	Not Available	626	Open in IMG/M
Ga0307988_1102993	Not Available	618	Open in IMG/M
Ga0307988_1105486	Not Available	606	Open in IMG/M
Ga0307988_1106510	Not Available	601	Open in IMG/M
Ga0307988_1110590	Not Available	583	Open in IMG/M
Ga0307988_1113965	Not Available	568	Open in IMG/M
Ga0307988_1114490	Not Available	566	Open in IMG/M
Ga0307988_1115679	Not Available	562	Open in IMG/M
Ga0307988_1119843	Not Available	545	Open in IMG/M
Ga0307988_1120911	Not Available	541	Open in IMG/M
Ga0307988_1121724	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	539	Open in IMG/M
Ga0307988_1123270	Not Available	533	Open in IMG/M
Ga0307988_1128676	Not Available	515	Open in IMG/M
Ga0307988_1129434	Not Available	513	Open in IMG/M
Ga0307988_1132028	Not Available	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307988_1004288	Ga0307988_10042882	F060609	MNELEKSGDVSVSRREFCKKAIKRSSVAAAVGVAGYLAYKKPAIRSFFGAGDAYAANTGAGSFSLKGDSN
Ga0307988_1016370	Ga0307988_10163704	F052275	LSTRSKYKCHSCGYSADVWDGPDVAPIGTVDTRVCLGCKSLVEVPIEFNGGSLIGDQNAEPSFLNRCPDCNSSNVVPWVVRHGCPKCSEHMTKEAGQA
Ga0307988_1019765	Ga0307988_10197653	F017670	MVYYILLPGDSESEAEYSTNVLGESSFKNFWSDQGFEILSRLIEKYPDTLESVKIKDEKSKEYTISEFLDIIATLNLIK
Ga0307988_1029410	Ga0307988_10294101	F029620	VFPLRQGLIGITSGTVTDPVNGKRPLIAHCVADGSLTITWPDTSSTVVGFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0307988_1030302	Ga0307988_10303021	F036294	GVKLVADEGVVTHLRVKLSESDKDVGAEGWNMWHGF
Ga0307988_1032895	Ga0307988_10328952	F096357	MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPEEPCGHIHPSAWFLCYQEDLAQAETERLRAARKRNPGVIRSAALVVASVTGKLSEEQKNMAFYFTRYVEAQEYELAQVVRRSTGGVRTAEKRKEEAAEKMEAAHGLWLKLDTPERDRCAIIATRRGCKADTVRGWKRKGWRSG
Ga0307988_1038781	Ga0307988_10387812	F042665	MTSPKMSFATLILLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPAAGMAAGYSTARWLGGYIDNKMTNKTK
Ga0307988_1038781	Ga0307988_10387813	F031722	MDETATTPTPTPTQKVTKPKFYREQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEFPTRFSPILWDADFVDNLASALHTQRIAMGDLKP
Ga0307988_1052481	Ga0307988_10524813	F007693	MKELTTLSPTAFAAKKAEAVRNEVMRKEISLSEFNVIDNTHIEVDGVKIELTPFAFNRLLGRLRIPTAFAKRFSDGFGSDGLKQLVTMMKTMKSSKNDQTVTLLVDPREKKITNILPA
Ga0307988_1053054	Ga0307988_10530541	F069498	KHGVIEVDAFDEMFGKPDDEPEPTPGQGGMNLEQLMAGGADD
Ga0307988_1055204	Ga0307988_10552042	F050579	MKKQPDKTPIKTLSDAYKVSGFRVRAKIDSYEHEPPAFILTLDRRSKKRCVADAGRHAAAFMTNAVGAFAISVAGIGRFISIFKCSA
Ga0307988_1060037	Ga0307988_10600372	F096357	MNHLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWFLCYQEDLAQAETERLRAARKRNPRLILAAALVVASATGKLSKAQKYMAFDFTRYVEDHEYELAQVVRRSTGGVRTAEKRKEEAAEKMEAAHGHWLKLDTPERDRCAIIATRRGCKADTVRGWKRKGWRSG
Ga0307988_1060928	Ga0307988_10609283	F042665	MTSPKLSFATLILLSSVVTVVVTLGVMPLLALTGSVAGLFFAPAAGMAAGYSTARWLGGYIDDK
Ga0307988_1061383	Ga0307988_10613833	F031722	MDETATTPTPTPTQTQKVTKPRFYREQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKIKDGEGTTWKKEFPTRFSPILWDADFIDTLASALHTQRIAMGDLKP
Ga0307988_1071058	Ga0307988_10710581	F066663	MDFSDFQSLDILKAGKIIEWVFSILRRTVAKGKPVGIITARDDSSLIQKFLSHNGININPNYIFAINDPALQLKGSTAERKKEAFRKFIDMGFNNFIFFDDDRENINLANSLNKEPGIRMKAKLIKQKWIPSFDDFK
Ga0307988_1075189	Ga0307988_10751893	F014671	MPRKYINGADMPTLTVFKMELQRNLDMGIEINPIITEYMQNRITEIEEYELIN
Ga0307988_1084685	Ga0307988_10846852	F029620	MAQQLRMLPASSGGAAQVFPLRQGLIGITSGTVTDPTNGKRPLIAHCVADGSLTLTWPDTSSTVVGFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0307988_1086063	Ga0307988_10860632	F043706	MHILYAILSTSLLVNLVAMALDTGQTSVWVLILCAVVIVFTGGGK
Ga0307988_1092178	Ga0307988_10921781	F043706	MRHILYGILSTALLVNLIFMALDTGQPSVWVIILCAVVIIFAGGGK
Ga0307988_1093033	Ga0307988_10930331	F043706	MHILYGILSTALLVNLVAMALDTGQPSVWVIIFAGGGK
Ga0307988_1097733	Ga0307988_10977331	F031722	MDETATTPTQKVTKPRFYREQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKIKDGEGTTWKKEFPTRFSPILWDADFIDTLASALH
Ga0307988_1101363	Ga0307988_11013632	F052986	MIEHALVRHGYGTLDQVRNMDTGDFLDAVEYQEISSAIEQYRIEQAQR
Ga0307988_1102993	Ga0307988_11029933	F031722	PTPTQKVTKPKFYREQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMRDGEGMTWKKEFPTRFSPILWDADFIDTLASALHTQRIAMGDLKP
Ga0307988_1105486	Ga0307988_11054862	F069498	HGVIEVDAFDQMFGTSDEEELPEMNLEQLMNGGPDEA
Ga0307988_1106510	Ga0307988_11065101	F067269	MIKSHTGSYTRALDRQLPDSDASFFWDTNDSKKKRKGYRDGLKYNAVSGTKRARYRGYDIVYTRLKNSSFCAHTIDVLGEGIGFEKNTLKSEDTEEVYAMLDEWIDNNNNNKTKTEQTYDDRDRN
Ga0307988_1107998	Ga0307988_11079981	F043706	TALLVNLVAMALDTGQPSVWVIILCAVVIIFAGGGK
Ga0307988_1110590	Ga0307988_11105902	F009178	MTIDKNNEGAWRICENINGYFETKVYYFYTKKEAIKLFREHKKAIINKSNA
Ga0307988_1113965	Ga0307988_11139652	F043706	MHILYGILSTALLVNLLFMALDTGHPSLWVLILCAVVIIFTGGAENRGSGR
Ga0307988_1114490	Ga0307988_11144901	F043706	MHILYGILSTALLVNLAAMALDTGQPSVWVIILCAVVIIFAGGGK
Ga0307988_1115679	Ga0307988_11156791	F018936	GTKVIDALSHFNGDIQGRIKYSEIDGELMASDFTIENSDLKINLACADPSLSFMEMSKEETDRAFSTEGSIFEFDLLTTHVDKMKSLFNLEREEDTFTLAVTDKGVAVQGPSYDATLAHSYEGENAVGEKVVIYKKYINLLDKENYKVVVCSNKVVFRSLDTNTHLTVAVAITDED
Ga0307988_1119843	Ga0307988_11198431	F043706	MHILYAILSTALLVNLLFMALDTGQTSVWVIIICAVVIIFTGGGK
Ga0307988_1120911	Ga0307988_11209111	F067269	MIKSHTGSYTRALDRQLPDSDASFFWDTNDSKKKRKGYRDGLKYNAVSGTKRERYRGYDIVYTRLKNSSFCAHTIDVLGEGIGFEKNTLKSEDTEEVYAMLDEWIDNNNNNKTKTEQTYDDRD
Ga0307988_1121724	Ga0307988_11217241	F056620	LKQHFFDMNFRHVFEHRAKRMTLKAEDFKTTRALEDRLNDKDRERFYVVIESVMCTKTKVGLSELFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSVKEFDTRYKISWSDKFKRGGLDIDKYLNSLG
Ga0307988_1123270	Ga0307988_11232702	F059346	KRSLISFQVGISGDKLLMDKVLEGAWALFVAIGWFFINRITAKVDALEKDKADNSALGRHSELIHETDRRIDELQHTTVPRQEYKSDIGMLHQRANELEKSKEDKVTDIRIVGGDESNAAKKGK
Ga0307988_1128676	Ga0307988_11286761	F031722	MDTKKDETATTPTPTQKVTKPSFYPEPAAAEKLGLSKETLRHWRVGYTVMSKGKRYTYPPKMIDGEGTTWKKEFPTRFSPILWDADFVDNLASA
Ga0307988_1129434	Ga0307988_11294342	F041711	RSKKKVTAHNTKKTIFMQPQKDGIEMKLNNKGYGANDTSHSATSWRPSITGDLRYRNPDQQKNTAPKLKGAPTGSGGILPADWDMFKRVMNTVRDKKKNYMYIPKITSFYRNREGKF
Ga0307988_1132028	Ga0307988_11320282	F067269	MIKNHTGSYTCAIERQLPDSDASFFWDTNDSKKKRKGYRDGLKYNAVSGTKRARYRGYDIVYTRLKNSSFCAHTIDVLGEGVGFEKNTLKSEDTEEVYAMLDEW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031741: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #183

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences