Basic Information | |
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IMG/M Taxon OID | 3300031617 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0267072 | Ga0228551 |
Sample Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_32mM_3 (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 29290071 |
Sequencing Scaffolds | 23 |
Novel Protein Genes | 25 |
Associated Families | 25 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 10 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 5 |
Not Available | 1 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 4 |
All Organisms → cellular organisms → Eukaryota | 1 |
All Organisms → cellular organisms → Eukaryota → Haptista | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
Type | Engineered |
Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | USA: Washington | |||||||
Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005228 | Metagenome / Metatranscriptome | 407 | Y |
F006207 | Metagenome / Metatranscriptome | 378 | Y |
F006495 | Metagenome / Metatranscriptome | 371 | Y |
F007922 | Metagenome / Metatranscriptome | 342 | Y |
F008934 | Metagenome / Metatranscriptome | 325 | Y |
F009840 | Metagenome / Metatranscriptome | 312 | Y |
F010299 | Metagenome / Metatranscriptome | 305 | Y |
F013862 | Metagenome / Metatranscriptome | 267 | Y |
F016912 | Metagenome / Metatranscriptome | 243 | Y |
F028443 | Metagenome / Metatranscriptome | 191 | Y |
F030329 | Metagenome / Metatranscriptome | 185 | Y |
F033307 | Metagenome / Metatranscriptome | 177 | Y |
F035605 | Metagenome / Metatranscriptome | 171 | Y |
F039966 | Metagenome / Metatranscriptome | 162 | N |
F043264 | Metagenome / Metatranscriptome | 156 | Y |
F043744 | Metagenome / Metatranscriptome | 155 | Y |
F053832 | Metagenome / Metatranscriptome | 140 | Y |
F069666 | Metagenome / Metatranscriptome | 123 | Y |
F079542 | Metagenome / Metatranscriptome | 115 | N |
F087987 | Metatranscriptome | 109 | N |
F088418 | Metagenome / Metatranscriptome | 109 | N |
F090311 | Metagenome / Metatranscriptome | 108 | N |
F091182 | Metagenome / Metatranscriptome | 107 | N |
F095000 | Metagenome / Metatranscriptome | 105 | N |
F102393 | Metagenome / Metatranscriptome | 101 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0228551_102906 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1542 | Open in IMG/M |
Ga0228551_104140 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1332 | Open in IMG/M |
Ga0228551_104767 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1244 | Open in IMG/M |
Ga0228551_106110 | Not Available | 1110 | Open in IMG/M |
Ga0228551_107427 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 1003 | Open in IMG/M |
Ga0228551_109314 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 888 | Open in IMG/M |
Ga0228551_109675 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 869 | Open in IMG/M |
Ga0228551_110565 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 826 | Open in IMG/M |
Ga0228551_110868 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 814 | Open in IMG/M |
Ga0228551_112352 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 754 | Open in IMG/M |
Ga0228551_112449 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 750 | Open in IMG/M |
Ga0228551_112894 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 733 | Open in IMG/M |
Ga0228551_114343 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 686 | Open in IMG/M |
Ga0228551_114798 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 671 | Open in IMG/M |
Ga0228551_116368 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 628 | Open in IMG/M |
Ga0228551_117828 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 592 | Open in IMG/M |
Ga0228551_118727 | All Organisms → cellular organisms → Eukaryota | 570 | Open in IMG/M |
Ga0228551_119065 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 563 | Open in IMG/M |
Ga0228551_120173 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 539 | Open in IMG/M |
Ga0228551_120678 | All Organisms → cellular organisms → Eukaryota → Haptista | 529 | Open in IMG/M |
Ga0228551_121650 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 510 | Open in IMG/M |
Ga0228551_121704 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 509 | Open in IMG/M |
Ga0228551_121847 | All Organisms → cellular organisms → Eukaryota → Haptista | 506 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0228551_102174 | Ga0228551_1021741 | F087987 | LPCARSLRPGRGGVKASCGALARVQLSSRIQPSMRGKLPFQRLRQDVGGTPEERKLAAERAAKAKKRRQWLQQTFDVRNLDLFGYEPDYTFQGYRSNFGAYISVAVGFAVLLRFTTRILDFMYPTPLINENHLLFARDMSEGFALPTFGFIFKRSGWRPFYDPTYFTFSFQQGTSGRASNSTYVDLGDEPCSFVDAYGRIIEDEARCPAISGEVVGSFFDSRFRFVHVSMNRCHNGTDSQGRTQPGPCRRPDEIDRLIYEGTVTLAISQRDLDTGSKDEYTQLVSIKKQFTRHIHATYDMFFTVRFVTIQPRAFFDEYDVVNMKRQYVVLDRQEASFTDFQAERLGRWNQVDPTYVPKYAGFFFMLSDEKIDQQRMYLTIFDMFEALGGTLCFFYFVLRLVALRWNHVHFTQQIKGLDLRDLNRDMFDQFGRLVDRSFQVPRELQDMHNVANLK |
Ga0228551_102906 | Ga0228551_1029061 | F030329 | LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDK |
Ga0228551_104140 | Ga0228551_1041402 | F069666 | LDEITDLDVEQLIEAGRPGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR |
Ga0228551_104767 | Ga0228551_1047671 | F006495 | RGTKASQQRPNMARVAYGATSAADDDDDIRFGSMGYTTELSEDYVTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS |
Ga0228551_106110 | Ga0228551_1061101 | F043744 | LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLW |
Ga0228551_107427 | Ga0228551_1074271 | F005228 | KRKALACVSSAMADEGMAEAKKTIVASGYKQVGSRATPEAITKEIKKLPAASGMLDSRKRALHDLAHALAYVQENHKETVCNNCKTEQCVFHLIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ |
Ga0228551_107719 | Ga0228551_1077191 | F053832 | QARAVGPSAAEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQ |
Ga0228551_109314 | Ga0228551_1093141 | F090311 | VTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRR |
Ga0228551_109675 | Ga0228551_1096751 | F102393 | VGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK |
Ga0228551_110565 | Ga0228551_1105651 | F079542 | SGGKSARKSGNQSSRSTMLTNRTSSPTGRYHPDPERRLELRKADLHANIDYLAPNGAPDHDRKAKESSWLVSQAFIEGLRYYPTGKAVLESNDSEATYSGNTHGKKAYNMEHMETDLRARLEIAPRFDNQEWRDDQLPREWVPDKSPSMKKHMARVRERLKR |
Ga0228551_110868 | Ga0228551_1108681 | F008934 | VFCASGLRMSSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIYTNGRPKGGSAHDNYGGRNLASTGHGADSLASGDYNYKDGRIADAWIDDHGMGGKTEVWRRDAQGFKDGEKYIE |
Ga0228551_112352 | Ga0228551_1123521 | F088418 | MRCRSVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSATSKVVSAETIKALDAHRAAEAQKNGEKRAWMRAEDVALLELHAGDLPMSTHHPA |
Ga0228551_112449 | Ga0228551_1124491 | F010299 | WQHEGLRRNAEKHFDAAIGQLMVDGVGDQTRVQLTTSFGKQLTELTAKFLESPPMQLQAIAAMRRKTGKAPKPPRGIRAGVGLVGALRNQFGGGQGNLQTYAGYVDGLNSVHVMYANDGAIADSSGAEPPPFRWQPKMNFDISI |
Ga0228551_112894 | Ga0228551_1128941 | F095000 | SLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL |
Ga0228551_114343 | Ga0228551_1143431 | F016912 | DMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD |
Ga0228551_114798 | Ga0228551_1147981 | F028443 | LTPVPDATSILLEECILPNARRDTSAEFKKVLAGDAATQAVLVEYRAKLQAWVRPLLRKERRIDNPNPQMTYRMWAELMDGPEPNANAFSRAKAACPKMVGEWFLTQESQITGDERTSKKNQMTFKASLSLAQARWNFLRSQAIEQIEGGEVDAEGGKDGQGQGTLDFSELNECICRCAVNMYEHLLDTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMW |
Ga0228551_116368 | Ga0228551_1163681 | F007922 | EHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAEGRPRLQAWYATIPLDD |
Ga0228551_117828 | Ga0228551_1178281 | F035605 | ERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG |
Ga0228551_118727 | Ga0228551_1187271 | F009840 | PFASLPPAPSRPYALGRSMSRTSILKQALGLLLLPSTASAAEKKPNVKDVVAQLEASTPKEERNAAGDKADHFPKIAFEGSQGQGKKIVFTVPHENLSPPGFSYIEYMWIKDESSGDILTAKKFTQSDPNLVITAYGNSGQKLTAASKDNKFGIWEGTFLVP |
Ga0228551_119065 | Ga0228551_1190651 | F013862 | QGGSVIGLLGVGEYYKRLTKSSKALLVLVELLLCALVPFVLSLGPSVLPQLAVVPLTVLWGLAYALPFYIPPGEFAMQIGGKKGTALFTNIFDASGFAASALWNPWASALAKNNDFKTILYSQALFGAISSLTMPLCMYRQMLKEQAAKKKE |
Ga0228551_120173 | Ga0228551_1201731 | F039966 | LNMTDGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAAELAMLREMCEADSMPARLEQCSIPELFRLVEGASFLDAPGALNHAQCALATRLNSKRANELRELLGATDDFGSAENRVAALAEPAFSPEGQLSVAAAGSAAGPPALQPQLTLGYAGGAPALQPQ |
Ga0228551_120678 | Ga0228551_1206781 | F006207 | VCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENGNSLVVTATDGYLWCFDFSNLPVR |
Ga0228551_121650 | Ga0228551_1216501 | F043264 | MPNHRRELQTAVSTSAGLLSALANTGVGRIVLDPGTYFLNAELSVTRSVVIEAAVAGSVVLDAQASSSSRRRVLYINPGSLGVVQLIGLNITRGYVLGLDVRAICD |
Ga0228551_121704 | Ga0228551_1217041 | F091182 | WVQQWSRAHYSVLLPELRKWELYPEGLVSFEVFADSLNDIGFPAMGRWNEVESVFYSWEPDEAGRLHWNVLRNRMTGGRLVRVQQAKHTTVSYYKQASRAGEGFGNRSSSRFNSGTVDRVGPGKYSPALATHGALATSSGHSGKLKSTAPRFLKKPQSDAPGPGKYTPR |
Ga0228551_121847 | Ga0228551_1218471 | F033307 | ISHDCWVPDYCEPEHFEYKLCKLRLRGRGQNQEYTCPDGEYCEELDCPLKCWLPSSCECLKMGPHEGRMMCAEGGCFKHPSTQWGLCRPHASDAELASKEGGKDEDEMLPTGFHFWTPDELLYNAKLHIDEGHHYARPREPKPFAKEEL |
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