NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031617

3300031617: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_32mM_3 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300031617 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128781 | Gp0267072 | Ga0228551
Sample NameMetatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_32mM_3 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size29290071
Sequencing Scaffolds23
Novel Protein Genes25
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii10
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales5
Not Available1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila4
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Haptista2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005228Metagenome / Metatranscriptome407Y
F006207Metagenome / Metatranscriptome378Y
F006495Metagenome / Metatranscriptome371Y
F007922Metagenome / Metatranscriptome342Y
F008934Metagenome / Metatranscriptome325Y
F009840Metagenome / Metatranscriptome312Y
F010299Metagenome / Metatranscriptome305Y
F013862Metagenome / Metatranscriptome267Y
F016912Metagenome / Metatranscriptome243Y
F028443Metagenome / Metatranscriptome191Y
F030329Metagenome / Metatranscriptome185Y
F033307Metagenome / Metatranscriptome177Y
F035605Metagenome / Metatranscriptome171Y
F039966Metagenome / Metatranscriptome162N
F043264Metagenome / Metatranscriptome156Y
F043744Metagenome / Metatranscriptome155Y
F053832Metagenome / Metatranscriptome140Y
F069666Metagenome / Metatranscriptome123Y
F079542Metagenome / Metatranscriptome115N
F087987Metatranscriptome109N
F088418Metagenome / Metatranscriptome109N
F090311Metagenome / Metatranscriptome108N
F091182Metagenome / Metatranscriptome107N
F095000Metagenome / Metatranscriptome105N
F102393Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228551_102906All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1542Open in IMG/M
Ga0228551_104140All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1332Open in IMG/M
Ga0228551_104767All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales1244Open in IMG/M
Ga0228551_106110Not Available1110Open in IMG/M
Ga0228551_107427All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila1003Open in IMG/M
Ga0228551_109314All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii888Open in IMG/M
Ga0228551_109675All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii869Open in IMG/M
Ga0228551_110565All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii826Open in IMG/M
Ga0228551_110868All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales814Open in IMG/M
Ga0228551_112352All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii754Open in IMG/M
Ga0228551_112449All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales750Open in IMG/M
Ga0228551_112894All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila733Open in IMG/M
Ga0228551_114343All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales686Open in IMG/M
Ga0228551_114798All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii671Open in IMG/M
Ga0228551_116368All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii628Open in IMG/M
Ga0228551_117828All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila592Open in IMG/M
Ga0228551_118727All Organisms → cellular organisms → Eukaryota570Open in IMG/M
Ga0228551_119065All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales563Open in IMG/M
Ga0228551_120173All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii539Open in IMG/M
Ga0228551_120678All Organisms → cellular organisms → Eukaryota → Haptista529Open in IMG/M
Ga0228551_121650All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii510Open in IMG/M
Ga0228551_121704All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila509Open in IMG/M
Ga0228551_121847All Organisms → cellular organisms → Eukaryota → Haptista506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228551_102174Ga0228551_1021741F087987LPCARSLRPGRGGVKASCGALARVQLSSRIQPSMRGKLPFQRLRQDVGGTPEERKLAAERAAKAKKRRQWLQQTFDVRNLDLFGYEPDYTFQGYRSNFGAYISVAVGFAVLLRFTTRILDFMYPTPLINENHLLFARDMSEGFALPTFGFIFKRSGWRPFYDPTYFTFSFQQGTSGRASNSTYVDLGDEPCSFVDAYGRIIEDEARCPAISGEVVGSFFDSRFRFVHVSMNRCHNGTDSQGRTQPGPCRRPDEIDRLIYEGTVTLAISQRDLDTGSKDEYTQLVSIKKQFTRHIHATYDMFFTVRFVTIQPRAFFDEYDVVNMKRQYVVLDRQEASFTDFQAERLGRWNQVDPTYVPKYAGFFFMLSDEKIDQQRMYLTIFDMFEALGGTLCFFYFVLRLVALRWNHVHFTQQIKGLDLRDLNRDMFDQFGRLVDRSFQVPRELQDMHNVANLK
Ga0228551_102906Ga0228551_1029061F030329LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDK
Ga0228551_104140Ga0228551_1041402F069666LDEITDLDVEQLIEAGRPGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228551_104767Ga0228551_1047671F006495RGTKASQQRPNMARVAYGATSAADDDDDIRFGSMGYTTELSEDYVTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS
Ga0228551_106110Ga0228551_1061101F043744LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLW
Ga0228551_107427Ga0228551_1074271F005228KRKALACVSSAMADEGMAEAKKTIVASGYKQVGSRATPEAITKEIKKLPAASGMLDSRKRALHDLAHALAYVQENHKETVCNNCKTEQCVFHLIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228551_107719Ga0228551_1077191F053832QARAVGPSAAEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQ
Ga0228551_109314Ga0228551_1093141F090311VTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRR
Ga0228551_109675Ga0228551_1096751F102393VGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228551_110565Ga0228551_1105651F079542SGGKSARKSGNQSSRSTMLTNRTSSPTGRYHPDPERRLELRKADLHANIDYLAPNGAPDHDRKAKESSWLVSQAFIEGLRYYPTGKAVLESNDSEATYSGNTHGKKAYNMEHMETDLRARLEIAPRFDNQEWRDDQLPREWVPDKSPSMKKHMARVRERLKR
Ga0228551_110868Ga0228551_1108681F008934VFCASGLRMSSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIYTNGRPKGGSAHDNYGGRNLASTGHGADSLASGDYNYKDGRIADAWIDDHGMGGKTEVWRRDAQGFKDGEKYIE
Ga0228551_112352Ga0228551_1123521F088418MRCRSVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSATSKVVSAETIKALDAHRAAEAQKNGEKRAWMRAEDVALLELHAGDLPMSTHHPA
Ga0228551_112449Ga0228551_1124491F010299WQHEGLRRNAEKHFDAAIGQLMVDGVGDQTRVQLTTSFGKQLTELTAKFLESPPMQLQAIAAMRRKTGKAPKPPRGIRAGVGLVGALRNQFGGGQGNLQTYAGYVDGLNSVHVMYANDGAIADSSGAEPPPFRWQPKMNFDISI
Ga0228551_112894Ga0228551_1128941F095000SLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228551_114343Ga0228551_1143431F016912DMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228551_114798Ga0228551_1147981F028443LTPVPDATSILLEECILPNARRDTSAEFKKVLAGDAATQAVLVEYRAKLQAWVRPLLRKERRIDNPNPQMTYRMWAELMDGPEPNANAFSRAKAACPKMVGEWFLTQESQITGDERTSKKNQMTFKASLSLAQARWNFLRSQAIEQIEGGEVDAEGGKDGQGQGTLDFSELNECICRCAVNMYEHLLDTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMW
Ga0228551_116368Ga0228551_1163681F007922EHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAEGRPRLQAWYATIPLDD
Ga0228551_117828Ga0228551_1178281F035605ERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG
Ga0228551_118727Ga0228551_1187271F009840PFASLPPAPSRPYALGRSMSRTSILKQALGLLLLPSTASAAEKKPNVKDVVAQLEASTPKEERNAAGDKADHFPKIAFEGSQGQGKKIVFTVPHENLSPPGFSYIEYMWIKDESSGDILTAKKFTQSDPNLVITAYGNSGQKLTAASKDNKFGIWEGTFLVP
Ga0228551_119065Ga0228551_1190651F013862QGGSVIGLLGVGEYYKRLTKSSKALLVLVELLLCALVPFVLSLGPSVLPQLAVVPLTVLWGLAYALPFYIPPGEFAMQIGGKKGTALFTNIFDASGFAASALWNPWASALAKNNDFKTILYSQALFGAISSLTMPLCMYRQMLKEQAAKKKE
Ga0228551_120173Ga0228551_1201731F039966LNMTDGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAAELAMLREMCEADSMPARLEQCSIPELFRLVEGASFLDAPGALNHAQCALATRLNSKRANELRELLGATDDFGSAENRVAALAEPAFSPEGQLSVAAAGSAAGPPALQPQLTLGYAGGAPALQPQ
Ga0228551_120678Ga0228551_1206781F006207VCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENGNSLVVTATDGYLWCFDFSNLPVR
Ga0228551_121650Ga0228551_1216501F043264MPNHRRELQTAVSTSAGLLSALANTGVGRIVLDPGTYFLNAELSVTRSVVIEAAVAGSVVLDAQASSSSRRRVLYINPGSLGVVQLIGLNITRGYVLGLDVRAICD
Ga0228551_121704Ga0228551_1217041F091182WVQQWSRAHYSVLLPELRKWELYPEGLVSFEVFADSLNDIGFPAMGRWNEVESVFYSWEPDEAGRLHWNVLRNRMTGGRLVRVQQAKHTTVSYYKQASRAGEGFGNRSSSRFNSGTVDRVGPGKYSPALATHGALATSSGHSGKLKSTAPRFLKKPQSDAPGPGKYTPR
Ga0228551_121847Ga0228551_1218471F033307ISHDCWVPDYCEPEHFEYKLCKLRLRGRGQNQEYTCPDGEYCEELDCPLKCWLPSSCECLKMGPHEGRMMCAEGGCFKHPSTQWGLCRPHASDAELASKEGGKDEDEMLPTGFHFWTPDELLYNAKLHIDEGHHYARPREPKPFAKEEL

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