Sample 3300031436

Basic Information
IMG/M Taxon OID	3300031436 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267079 \| Ga0228558
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_8mM_1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_8mM_1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	22079813
Sequencing Scaffolds	15
Novel Protein Genes	18
Associated Families	18

Dataset Contents

Total Genome Size

22079813

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001682	Metagenome / Metatranscriptome	652	Y
F007736	Metagenome / Metatranscriptome	345	Y
F007958	Metagenome / Metatranscriptome	341	Y
F008934	Metagenome / Metatranscriptome	325	Y
F028443	Metagenome / Metatranscriptome	191	Y
F039966	Metagenome / Metatranscriptome	162	N
F047450	Metagenome / Metatranscriptome	149	Y
F060526	Metagenome / Metatranscriptome	132	Y
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F086468	Metagenome / Metatranscriptome	110	N
F089700	Metatranscriptome	108	N
F093418	Metagenome / Metatranscriptome	106	Y
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N
F103992	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228558_101576	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1703	Open in IMG/M
Ga0228558_101874	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1585	Open in IMG/M
Ga0228558_102027	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1535	Open in IMG/M
Ga0228558_103420	All Organisms → Viruses → Predicted Viral	1216	Open in IMG/M
Ga0228558_104380	Not Available	1080	Open in IMG/M
Ga0228558_106506	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	876	Open in IMG/M
Ga0228558_108877	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	738	Open in IMG/M
Ga0228558_109647	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	702	Open in IMG/M
Ga0228558_110421	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	671	Open in IMG/M
Ga0228558_110474	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	669	Open in IMG/M
Ga0228558_110519	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	667	Open in IMG/M
Ga0228558_111507	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	629	Open in IMG/M
Ga0228558_114248	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	548	Open in IMG/M
Ga0228558_114290	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	547	Open in IMG/M
Ga0228558_115198	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	524	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228558_100213	Ga0228558_1002131	F060526	ITGDERCRNKFKISLSLPQAKFAFINSQSLDQLSVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSPAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSVTLPGQALKDHKKWLQVWQRLDIGDMYYFPLWEKGVHDVLQKHFKDLCLIFFAYCRSMLGSASAEDAAEMEMAEFKDFVDECGLETKQISFDLMSNNFMKANAINSAQVRDAHQEGRRSAGTKMDGRTTAEVATQKRNDGSETKKDAELVLYEFIGMLVRIAFQRANPTFGNYGNKKAVVHLVNYPGSGMEGNGCLQTMIEDEILPRARKDTSAVFRETVMTEMSVVKVLDEYRPKIKAWYDLTCADDTKQTTITDKLQMDQWKRICDEKDLVGTWSCFRESDISGHPGCKTEYKWRLSMSQASMAFIDSNPRQGEGSINQQQAGQSTGTDSFATLDLEEFLECCARCGMDMYRAVKEVSPANAVKGFMQNLLGEASPDEVVVRATYIKCDRYDAKGLTKPLKGESQVDLDKWIDCWQRMEIMDVYLWPLWEKEVHDIMHALFKELQSIFLAYCRSIFDQTGADATEMSLDEFHDFVVDVGLETKKYKFEQMCNAFIKANAINTAQVHAQKKDLRRDKDSKSHDAWDFQKATKEPGKVKMGDSNYEAKKDQELDLAEFMNMMVRIGFWRANPGFGLHGNKDEVVSVPLALSTMLNEVILPRAKRESTAEFRTKEMTDPKVLTVLDQYKSRLREWYDKKVADDSDDLAGKSAGIISDKLQFEEWLRVLDRQDIVGVWEVEQMSEITGDESTRGNIKIRLSIPTCKVCFVDSQSQKDAHTALMGGKSDEASDQATLDFDEWLECCCRTACKKYSAIKQMDASQKVKSFMQNFFGEATEEDCVRTATYIRAVRFDLSESRPLKDESPEEHAAFLTEFKQLDLQGLYGFPLWEAEVHDLLHANFRELASIFRSYCKSVGEASSDDSSKTMDLEEFNDFVIDCMLETNFGQAYTFENMKEQFSRADKSGKGLAGPQANAELVLYEFLNVITRISFWRINPECGELEMDHQDTILPVPQCLEKTLRECILPKAHRDDAGQFRGTVMQMPEVQASLAEGRPRLQAWYATIPLDDNQKVGITQWVSTLQALNVLGTFTCTQGSDIVGDDRVGTEF
Ga0228558_101576	Ga0228558_1015761	F001682	VQLTLSSLFANPIVPMSAVAFTAIAALSNTAEITSTNIRSGAAFDNIRASWNQALKLGDFSSKLRCDYDYKDNKDFLKEVSLTGDLMEASSNDELRVSYDVTHNFPQRKTRVKLTANTGGNTIRAELDDRQLKQVSAQRDLDLGDQKVNTDVSWMVKAQTARVKLMSNLGGGNKDRVKAQIDYDTRDNSASYEVGYQHQLNDGRDVSATFNPGDKNLDVEFVDNKFESGATWTAKASVPLENAGGNLLDNAKVTLKRSWSW
Ga0228558_101874	Ga0228558_1018743	F074505	MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPRPERTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228558_102027	Ga0228558_1020271	F007958	PKSASASLIAHPAAMGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0228558_103420	Ga0228558_1034201	F008934	FCASGLRMSSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIYTNGRPKGGSAHDNYGGRNLASTGHGADSLASGDYNYKDGRIADAWIDDHGMGGKTEVWRRDAQGFKDGEKYIEFGEMAHVQVGKNRNH
Ga0228558_104380	Ga0228558_1043801	F089700	GLRVAMPAKATAQKTMAGASVFDPTTAKCGLVDGGEADGVASSNEMLELMNNHALLMQSSTGGKSLLMGNNRDADGTVDRSPPPTPEVKKILKEVKRGILRYGIDMIMEFRTQGATQYGTITKSRFHSIITTTFGNQKNFFWDDEKLKILSTHYGTGATDMKLGGQRQVAWMDFCEDLGETDGSYQENAKYLEGYEGFNTLYADAVLADAVVDPMGLKPTDDNPYN
Ga0228558_106188	Ga0228558_1061881	F047450	HYFPLWEKGVFDCLQECFQDLTNIFAHYAKSIGGSTTAEDAVEMTMTEFKELVKDVGLETKDLKFDVMSNMFKKANATNSGDVRKQRMVEKGNADAQGEFAMNTGTQMALKKNIQQASPKRNAKLNKIRDDELDQELVLYEFVEVMIRIGFWRANPFHGINKLAAKLVPLPDCLHQMLHEVVLPNAKRDDSALFKERLAGDKAMLSALATYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGIDQRAQGYTPGNGVGNWEIYQDSEITGDERCRNKFKISLSLPQAKFAFINS
Ga0228558_106506	Ga0228558_1065061	F102393	PFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228558_108877	Ga0228558_1088771	F007736	FDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEV
Ga0228558_109647	Ga0228558_1096471	F028443	LTPVPESTQILLEECILPKAKRDTSGEFKKVLASDASTQAVLGEYREKLQNWLRPILRKERTTQNPNPQMTYSLWVALMDGPDSEQKESGKKPPCPKMVGEWSVQQESQITGDERTSRKNQITFKAALSIPQCRWNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMKTFLPSHDRKAMTMADATRSFLRNLLSEKTPEMCMWEATVIKADRYDWQKQT
Ga0228558_110421	Ga0228558_1104211	F104622	AADIMVYCAFVPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQV
Ga0228558_110474	Ga0228558_1104741	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRSGTLKDMMDDAPTEDGVYPVPMIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALASRLNGKRADELRELLGEMDGFGSVEERVAALAEPAFSPEGQLSVATVGSAAGPPALQPQPSLSGMAVTDDAKEVALGMVDVVTLAELKGVNRSWLALARRVLCSRLSRCK
Ga0228558_110519	Ga0228558_1105191	F086468	EIDLLGEPRLKNGLTYYPGVLTDDGSVILGNIVRLQLMAEGSQPYIGYGFLKGLWLWRDQPYMRVQYMAPTRMDLPRDAIAYRAAPDASGIPELMVTNRVGDLHLNALLGPVYIEGSPLMGQLFQENVGASADGFILMRHLDPAVQRVQPLDEAFRLTPIVQAFPKTVLRAMLVPLASSKAPELRVPKCGGSCSSSISSSSTAPVTPATPHAAPPAAALPS
Ga0228558_111507	Ga0228558_1115071	F103992	ASPRGVHERGPRPERSALEMGESAAYVLKGIEDMLQTEVKYFSMVCKDGEKMYICLGKRALFLIDFEPPFQEQFYYAWVRRVIIDSDNLLLFQIDFHEGRQSLLLESFERSRLCDELAICWKADAMFRQWRWQPFPLKRGQCDVGRRDRARTAVEFTAAPQKMQRIEFKGYQLFLDDAYREDSLGADGMPSGRYRATGRDREIAVVVDP
Ga0228558_114248	Ga0228558_1142481	F074330	LESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQ
Ga0228558_114290	Ga0228558_1142901	F095000	NELQHKHDELAAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQD
Ga0228558_114532	Ga0228558_1145321	F093418	ELTLIFLAYCRSLLGSDTAEDAMEMEMSEFHDFVVECGLETKHVSFDLMTNMFIKANATNSAAVRDQHSEGRRSAETKMDHLVGKGDTLATGRTTKVVGKVKGTNDGKEAKKDAELVLYEFMNLLVRIAFQRANPTFGNFGDQKPVKHLPGCLRTMLEDEILPRARKDTSAIFREKIMSE
Ga0228558_115198	Ga0228558_1151981	F104431	KLCTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031436: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_8mM_1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences