| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031410 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0267064 | Ga0228543 |
| Sample Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_8mM_1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 19729203 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 23 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 11 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 3 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008934 | Metagenome / Metatranscriptome | 325 | Y |
| F009117 | Metagenome / Metatranscriptome | 322 | Y |
| F010978 | Metagenome / Metatranscriptome | 296 | Y |
| F013853 | Metagenome / Metatranscriptome | 267 | N |
| F022338 | Metagenome / Metatranscriptome | 214 | Y |
| F030329 | Metagenome / Metatranscriptome | 185 | Y |
| F039928 | Metagenome / Metatranscriptome | 162 | N |
| F039966 | Metagenome / Metatranscriptome | 162 | N |
| F042124 | Metagenome / Metatranscriptome | 158 | N |
| F043734 | Metagenome / Metatranscriptome | 155 | Y |
| F063286 | Metagenome / Metatranscriptome | 129 | Y |
| F074330 | Metagenome / Metatranscriptome | 119 | N |
| F074505 | Metagenome / Metatranscriptome | 119 | N |
| F076132 | Metagenome / Metatranscriptome | 118 | Y |
| F080844 | Metagenome / Metatranscriptome | 114 | N |
| F087102 | Metagenome / Metatranscriptome | 110 | N |
| F088418 | Metagenome / Metatranscriptome | 109 | N |
| F095000 | Metagenome / Metatranscriptome | 105 | N |
| F104431 | Metagenome / Metatranscriptome | 100 | N |
| F104622 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0228543_101284 | Not Available | 1694 | Open in IMG/M |
| Ga0228543_102292 | Not Available | 1341 | Open in IMG/M |
| Ga0228543_102833 | All Organisms → Viruses → Predicted Viral | 1218 | Open in IMG/M |
| Ga0228543_104832 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 942 | Open in IMG/M |
| Ga0228543_105581 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 874 | Open in IMG/M |
| Ga0228543_105964 | Not Available | 843 | Open in IMG/M |
| Ga0228543_106346 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 818 | Open in IMG/M |
| Ga0228543_106353 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 818 | Open in IMG/M |
| Ga0228543_106442 | All Organisms → cellular organisms → Eukaryota | 811 | Open in IMG/M |
| Ga0228543_106784 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 791 | Open in IMG/M |
| Ga0228543_106813 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 789 | Open in IMG/M |
| Ga0228543_107551 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 748 | Open in IMG/M |
| Ga0228543_108189 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 713 | Open in IMG/M |
| Ga0228543_108369 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 705 | Open in IMG/M |
| Ga0228543_108798 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 685 | Open in IMG/M |
| Ga0228543_109900 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 638 | Open in IMG/M |
| Ga0228543_110600 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 613 | Open in IMG/M |
| Ga0228543_110941 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 601 | Open in IMG/M |
| Ga0228543_113579 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 525 | Open in IMG/M |
| Ga0228543_113990 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 514 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0228543_101284 | Ga0228543_1012841 | F030329 | LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAEGRPRLQAWYATIPLDDNQKVGINQW |
| Ga0228543_102292 | Ga0228543_1022921 | F009117 | NEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD |
| Ga0228543_102350 | Ga0228543_1023501 | F063286 | TVIKADRYDWQKQTKMLPGFSPAQHKLWLKCWSQVTLIDVHHFPLWEKGVHDTLQQHFSALMRIFSHYSKGVSGVDSVADALEIELEEFHDFVKDAKLETRMINFTTMSVIFAKANATNTMEAFEQRMRERRNATVVAEQEVTADKQAVNRPISPKKGAFPDAPIPLPKEEKGKTKREGVEAKKPAKPDNRLTLSEFLGCLVRISFMRANPKHGQYDNISKLVELPSCLRKMLEEVVIPNAKQDQSSLFREELLSNAEVQAAVEEYRERLVFYYNEVNQLTALKGKTDNKLSMETWMDVCRGYLHFSKTKGSKHMEKARTTGSGKEGGGLGEGAFVGDCTVSRESDITGDERCREKFTCRLSTLEAKFAFLNSQSLEQMSAGDATEDDAMATLDFEEFLECLCRCARDKYGEIKLMSLADGVRGVFQNILGEKTDEAVIRD |
| Ga0228543_102833 | Ga0228543_1028331 | F008934 | SVFCASGLRMSSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIYTNGRPKGGSAHDNYGGRNLASTGHGADSLASGDYNYKDGRIADAWIDDHGMGGKTEVWRRDAQGFKDGEKYIEFGEMAHVQVGKNRNH |
| Ga0228543_104832 | Ga0228543_1048322 | F074505 | MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHPQRTARRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA |
| Ga0228543_105581 | Ga0228543_1055811 | F042124 | SINGPAGGRPSRSPSRSDVAKAASLAEEPLIPPVVRVKNSAKAGRPFSNYQKHQAKTQALKGHTIHITSVGPYISRPEQRNLDDQGLRYRSIHKEAFKPAGLWDKYEPPLGGWGFAAAGFVLPDDLPETAKRFGSFYNTHLHQFRATAPKGNIYM |
| Ga0228543_105964 | Ga0228543_1059641 | F087102 | VALGAGATSQARTGATSRPRDAFSMIYEETIDAVFKADSRAAGLAKLRPYLDANMSKASADAFQECCGKLFVLSRVHTSMEPEVSFAKVQEIIDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPADEVGALLDRYRWPHDAKRTQVMCILRKILEAVAEIRTTSDAAVRGSESIQEARLILNHSHERL |
| Ga0228543_106346 | Ga0228543_1063462 | F104622 | QAITVYSMEFLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFIPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGDGAGAADRVEEFQPLEDDAAQVA |
| Ga0228543_106353 | Ga0228543_1063531 | F022338 | VFHLIMLLTDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ |
| Ga0228543_106442 | Ga0228543_1064421 | F010978 | NPLERTSVQLMLVVAGIALFANSAVDRTDDGLPWEVTLAGFCVFAVVFCAIYAKKTEVALSIVTMIAIVMPTYYVHNYEVPASNWELGSMFPLKTSKEEVLRGCFKAAPNASRFDKMLPFDLSLAHFSVLPPGLALRVNTSEIYHSGLKLDDPLTKERTHDYLLFSSPRKVKEKTESLVLLARVPSKFEVWPKNIEDYSFSLQTASNIVAPPTMFGEVTKLDKGPAIEILQRKHHLRPFMLDVYRVEYVYE |
| Ga0228543_106784 | Ga0228543_1067841 | F039928 | EDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF |
| Ga0228543_106813 | Ga0228543_1068131 | F013853 | KISQPIAETGSKWESYSKFRLGGMLSKVPRHIRVAGDPNRLAFTLNYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGVIAGFQWLPNLVLLVGLTNGYMVTVDFGALIKLQQSNKLPDRVSAMGTSRVFNEYLQDVSAFYTANVGQRVACCGDTMVKIVHRTGVELEVHLEVDLDRQAKIGHYLDKVDWDDSAKAFACSATDGFLYVHEILD |
| Ga0228543_107551 | Ga0228543_1075511 | F095000 | ERDGLRNELQHKHDELAAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL |
| Ga0228543_108189 | Ga0228543_1081891 | F104431 | AHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRNASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPDCQLPRKHKVGNLHDQHSQLHMAEEAFKCFEGATTVVVADDR |
| Ga0228543_108369 | Ga0228543_1083691 | F039966 | MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPMIAAAELAVLREMCEADSMPARLEQCLISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVALGMVDVGTLAELKGVSR |
| Ga0228543_108798 | Ga0228543_1087981 | F087102 | AAGLAKLRPYLDANMSKESAAAFQECCGKLFVLSRVHASMAPEVSFAKVQEITDTLSRECSMASHMAAPLVAGLKRFVEHRILPNGALDHLTEHGFRLPADEVGALLDLYRWPHDAKRQQVMCILRKALEAVAELRTTSDAAVRGSESIEEARLILNHSHERLVRTMESVLDEHATRADPTLVLGQSLFVAVSRVAQVQEQENVRRLQSRSWPPLHSRVQTVFAEAE |
| Ga0228543_109900 | Ga0228543_1099001 | F076132 | PTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRT |
| Ga0228543_110370 | Ga0228543_1103701 | F076132 | GKMDKEEVVPVAFALSNMLNEVILPRAKRENSAAFRSKEMQDPKMIAVLDVYKPKLKEWYDKKVLDDSDQKGMAVSDKIGFQEWLRVLDRQDIVGEWEVEQMSEITGDESTKGVVRCRLSIPTCKAAFMDSQSAEQLGVAQADATSEQSVLDFDEWLECLARIANAKYQSIKQMDPAAKVKAFLQNFFGEKSEEDCMREATYIRAVR |
| Ga0228543_110600 | Ga0228543_1106001 | F088418 | GLARHSLAQSWAFCMRCRSVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSATSKVVSAETIKALDAHRAAE |
| Ga0228543_110941 | Ga0228543_1109411 | F074330 | PSMVLNPTSTGFLLLASVVVLIASLFLTYDPVDLCAASNGLKFCVGFNNAYAFVMCIMEIIVCVVALFMLKMKQAILQKVLVAKAPLIGPITVEGLISLFLFVNITIGAFILTNMPEHGFDQTNNGYFACWAGACASLGNIGVDPAKMVDDLRAKTGVSPAFGLIISSIMVLLQSYPYLAFDPTQMPADGGPWRPVPVWH |
| Ga0228543_110962 | Ga0228543_1109622 | F080844 | GLLVLEVGASQMPPAQSPCSIGAVTTRLTVTVPQGINGGDLVRVAAPDGSYHSIMVPGGLASGQQFSVELLATSSSSAEVQKLRLELDAERALRRETQQEALRNRSALETLQIKRAADHAFFRDVIKRQRRCIEALEELM |
| Ga0228543_113579 | Ga0228543_1135791 | F043734 | RSAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE |
| Ga0228543_113990 | Ga0228543_1139901 | F039966 | QRAGTLKDMMDDAPPEDGVYPVPTIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGYAGGAPALQPQLTLWMAVTDDAKEVALGMVDVVTLAELKGVNRSW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |