Sample 3300031390

Basic Information
IMG/M Taxon OID	3300031390 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267066 \| Ga0228545
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_8mM_3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_8mM_3 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	22333342
Sequencing Scaffolds	16
Novel Protein Genes	18
Associated Families	16

Dataset Contents

Total Genome Size

22333342

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
Not Available	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F006882	Metagenome / Metatranscriptome	362	Y
F008934	Metagenome / Metatranscriptome	325	Y
F009790	Metagenome / Metatranscriptome	312	Y
F025010	Metagenome / Metatranscriptome	203	Y
F030329	Metagenome / Metatranscriptome	185	Y
F030342	Metagenome / Metatranscriptome	185	Y
F039966	Metagenome / Metatranscriptome	162	N
F043734	Metagenome / Metatranscriptome	155	Y
F048057	Metagenome / Metatranscriptome	148	N
F061461	Metagenome / Metatranscriptome	131	Y
F063743	Metagenome / Metatranscriptome	129	Y
F069666	Metagenome / Metatranscriptome	123	Y
F074330	Metagenome / Metatranscriptome	119	N
F079587	Metagenome / Metatranscriptome	115	N
F102393	Metagenome / Metatranscriptome	101	N
F104622	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228545_101268	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1849	Open in IMG/M
Ga0228545_101570	Not Available	1719	Open in IMG/M
Ga0228545_103654	All Organisms → Viruses → Predicted Viral	1207	Open in IMG/M
Ga0228545_105367	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	990	Open in IMG/M
Ga0228545_105590	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	969	Open in IMG/M
Ga0228545_106736	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	876	Open in IMG/M
Ga0228545_107396	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	831	Open in IMG/M
Ga0228545_107753	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	810	Open in IMG/M
Ga0228545_108552	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	772	Open in IMG/M
Ga0228545_108712	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	763	Open in IMG/M
Ga0228545_109808	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	711	Open in IMG/M
Ga0228545_110251	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	692	Open in IMG/M
Ga0228545_111709	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	637	Open in IMG/M
Ga0228545_113926	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	568	Open in IMG/M
Ga0228545_114998	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	540	Open in IMG/M
Ga0228545_115527	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	527	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228545_101268	Ga0228545_1012681	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDKTLRECILPKAHRDDAAEFRAKAMQLPEVQAALQEGRSRLQAWYATIPLDDNQKVGITQWVSALQALNVIGTFTCTQGSDIVGDDRVGTEFKCRLSVPQAKAAF
Ga0228545_101570	Ga0228545_1015701	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAEGRPRLQAWYATIPLDDNQKVGINQWVSTLQALN
Ga0228545_101879	Ga0228545_1018791	F009790	WDPASAMSAPSGQWRSTNHGYNSKDVVLGAGFAQYTPGLCDDEVYQTVISGSLGNSGGYKKAVVGDGSGRMFGQTADAQQGGYNGAEMDEAMNNDMTGVTEAGYADKIATGFDKVAGDYSTLPRWMQEIFIKLRVLAKSEGIDMERTFQDAGGSRFGTISKRLFISALCIGFQHYRFSPAELDAIADAYGCGSDDIFNGGKMLVAWRDFVNDVLSAEVVAKEYEYSATDTDETDAGYSDGIATGIDKIAGGFDDLPPMLQQLCKDLRRMAKIEGISLEFSLQQAGGTRFGTMPKRHFCSALTIAFHHFKFTPEIYKALCDAYAVGPPDFAEGGKEEVAWRDFCNDVLSSGKDISAHGVQAIDLAAKYDPKKNASFNDSALAGLF
Ga0228545_103654	Ga0228545_1036541	F008934	KSSVFCASGLRMSSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIYTNGRPKGGSAHDNYGGRNLASTGHGADSLASGDYNYKDGRIADAWIDDHGMGGKTEVWRRDAQGFKDGEKYIEFGEMAHVQVGKNRNH
Ga0228545_104694	Ga0228545_1046942	F079587	FSRTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228545_105367	Ga0228545_1053671	F048057	NFSSSQRAKMKKLRKLREVAAEQAIRQAPPHPFLAGVSDDEPFWRDLPDILQSQILVMIDNGMPTKKNPKPRPVERILWAGTPHTRKRTILLLVLLWAVTLAVPAILLEDLVDEVGGWLALAWALFTVFLFVPRLTRGSREVFALTSQRAIVSRRTMYCSIHSEKFYYSDIASAKLTPHRDGTATVVLTKTKVMYKPTERITFDRIRDVRGAERVLGRMLPGDVAHDAGFPESDEPLPYEPR
Ga0228545_105590	Ga0228545_1055901	F102393	MLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228545_106736	Ga0228545_1067362	F069666	AGRPGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228545_107396	Ga0228545_1073961	F006882	SALSRAMLRNMLDGDGQDQYDSGGWCFPKPIPPQNKNDGQTRVLDPMMPVNTNEAFVAGLREYPDEDPRLWQAHKKEWQSVQGGSILTICKLHPSQRPPMVRPEDDNELGQQDVDEFIKKLVETGQPIIKAGGLGKNSLSAMGAKGILGAPKGVESNNFDGQRGFTGLTE
Ga0228545_107753	Ga0228545_1077531	F025010	HCSFAEASAVLSERLDAATQPLEVEKIRGAMDTLKSASEAAVNTATGTFMFIWAKVSNVISKRTDFTFKLEAVGKSKATSHSATLVRPETEAEFYEMSHLFVMTIIALGLASATIVLKFMDDVVFATIRMKETFRVAHELFIIYLREMDFDPARALHMGNVFRRGGQDTLLSEARRNAAASFRTCGGTPQLDGAKKSDAKNPKTDTKPNGKSDDSSKKPCPDFNAGRPCKKLKPDGTCVFAHRCNQFVSDKGPGGYCFGVHARCTGCDYD
Ga0228545_108552	Ga0228545_1085521	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVALGMVDVGTLAELKGVNRSWLALARRVLCSRLSRCEGQPAPTQLAEIT
Ga0228545_108712	Ga0228545_1087121	F039966	CESAKMADPGAQRVRLRAREGEDVEWTHRVAQRASTLKNMMDDAPTEDGVYPLPTIAAAELEMLMEMCEADSMPARLELCSIPELFRLVEGASFLDAPGALNHAQRTLASRLEGKRADELREVLGATDDFGSVEDRLAALAEPAFSPEGQLSLATTGSAGPPALEPQPSLSGVEVTDDAKEAALGMVDVGTLAELKGVSRSWLVLARRVLCSRLGRCEGLPAPTQMAEITDLNIKVLVDAGRPWEAAAAGRMLP
Ga0228545_109808	Ga0228545_1098081	F030342	LADGVRGVFQNILGEKTDEAVIRDATYIHAERFDWKLAKPLNGQSLAAHRKWIDCWQNISIADLHYFPLWEKDVFEVMQAVFPDLTNIFAHYAKSIGGSTTAEDAVEMTMSEFKDFVKDVSLETQHLRFDVMMNMFKKANATNSNEAHFQRKAEQGTAAAKEVGAGSTSKALVVATKTKSAASQKDTEMDAELVLYEFVEVLIRISFWRANPYHGIHKLATKLIPLPDCLVQMLQE
Ga0228545_110251	Ga0228545_1102511	F063743	ENTEECMNTATLIKAERYNWKRYSVTLPGQALKDHKKWLQVWQRLDIGDMYYFPLWEKGVHDVLQKHFKDLCLIFFAYCRSMLGSASAEDAAEMEMAEFKDFVDECGLETKQISFDLMSNNFMKANAINSAQVRDAHQEGRRSAGTKMDGRTTAEVATQKRNDGSETKKDAELVLYEFIGMLVRIAFQRANPTFGNYGNKKAVVHLVNYPGSGMEGNGCLQTMIEDEILP
Ga0228545_111709	Ga0228545_1117091	F074330	MLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRIN
Ga0228545_113926	Ga0228545_1139261	F104622	FLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFIPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQVA
Ga0228545_114998	Ga0228545_1149981	F043734	RRCFALYARSAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE
Ga0228545_115527	Ga0228545_1155271	F061461	GLAEGESIWVRLATIVRARRLDLRLLMNACDLHNRGMVPIKEFQKGLAYSLGNQWNELECTTAEFKELTDPYLSRVPKKPGDPDPFVKWQEFTTHVQALADQMGSGKAGDY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031390: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_8mM_3 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences