| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031207 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0267114 | Ga0228593 |
| Sample Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_16mM_3 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 22706713 |
| Sequencing Scaffolds | 19 |
| Novel Protein Genes | 22 |
| Associated Families | 19 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 11 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 4 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 3 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006495 | Metagenome / Metatranscriptome | 371 | Y |
| F006882 | Metagenome / Metatranscriptome | 362 | Y |
| F007736 | Metagenome / Metatranscriptome | 345 | Y |
| F008291 | Metagenome / Metatranscriptome | 335 | Y |
| F008473 | Metagenome / Metatranscriptome | 332 | Y |
| F013853 | Metagenome / Metatranscriptome | 267 | N |
| F013862 | Metagenome / Metatranscriptome | 267 | Y |
| F024710 | Metagenome / Metatranscriptome | 204 | Y |
| F028443 | Metagenome / Metatranscriptome | 191 | Y |
| F030329 | Metagenome / Metatranscriptome | 185 | Y |
| F032522 | Metagenome / Metatranscriptome | 179 | Y |
| F039952 | Metagenome / Metatranscriptome | 162 | N |
| F060526 | Metagenome / Metatranscriptome | 132 | Y |
| F068421 | Metagenome / Metatranscriptome | 124 | Y |
| F069666 | Metagenome / Metatranscriptome | 123 | Y |
| F074330 | Metagenome / Metatranscriptome | 119 | N |
| F074505 | Metagenome / Metatranscriptome | 119 | N |
| F095000 | Metagenome / Metatranscriptome | 105 | N |
| F102720 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0228593_102308 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1533 | Open in IMG/M |
| Ga0228593_103045 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1354 | Open in IMG/M |
| Ga0228593_103347 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1292 | Open in IMG/M |
| Ga0228593_103658 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1237 | Open in IMG/M |
| Ga0228593_104333 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1147 | Open in IMG/M |
| Ga0228593_104409 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1136 | Open in IMG/M |
| Ga0228593_105210 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 1037 | Open in IMG/M |
| Ga0228593_105276 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1031 | Open in IMG/M |
| Ga0228593_106741 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 907 | Open in IMG/M |
| Ga0228593_108840 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 773 | Open in IMG/M |
| Ga0228593_109473 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 743 | Open in IMG/M |
| Ga0228593_109696 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 731 | Open in IMG/M |
| Ga0228593_110555 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 693 | Open in IMG/M |
| Ga0228593_110593 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 691 | Open in IMG/M |
| Ga0228593_111443 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 655 | Open in IMG/M |
| Ga0228593_113117 | All Organisms → cellular organisms → Eukaryota | 597 | Open in IMG/M |
| Ga0228593_113315 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 590 | Open in IMG/M |
| Ga0228593_113691 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 578 | Open in IMG/M |
| Ga0228593_115482 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 531 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0228593_100828 | Ga0228593_1008281 | F060526 | DEILPRARKDTSAVFRETVMTEMSVVKVLDEYRPKIKAWYDLTCADDTKQTTITDKLQMDQWKRICDEKDLVGTWSCFRESDISGHPGCKTEYKWRLSMSQASMAFIDSNPRQGEGSINQQQAGQSTGTDSFATLDLEEFLECCARCGMDMYRAVKEVSPANAVKGFMQNLLGEASPDEVVVRATYIKCDRYDAKGLTKPLKGESQVDLDKWIDCWQRMEIMDVYLWPLWEKEVHDIMHALFKELQSIFLAYCRSIFDQTGADATEMSLDEFHDFVVDVGLETKKYKFEQMCNAFIKANAINTAQVHAQKKDLRRDKDSKSHDAWDFQKATKEPGKVKMGDSNYEAKKDQELDLAEFMNMMVRIGFWRANPGFGLHGNKDEVVSVPLALSTMLNEVILPRAKRESTAEFRTKEMTDPKVLTVLDQYKSRLREWYDKKVADDSDDLAGKSAGIISDKLQFEEWLRVLDRQDIVGVWEVEQMSEITGDESTRGNIKIRLSIPTCKVCFVDSQSQKDAHTALMGGKSDEASDQATLDFDEWLECCCRTACKKYSAIKQMDASQKVKSFMQNFFGEATEEDCVRTATYIRAVRFDLSESRPLKDESPEEHAAFLTEFKQLDLQGLYGFPLWEAEVHDLLHANFRELASIFRSYCKSVGEASSDDSSKTMDLEEFNDFVIDCMLETNFGQAYTFENMKEQFSRADKSGKGLAGPQANAELVLYEFLNVITRISFWRINPECGELEMDHQDILPVPQCLEKTLRECIL |
| Ga0228593_101756 | Ga0228593_1017561 | F024710 | AEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQIRDPGRDGKSKMLCTVKSNEFACDDPVYNSTQIIGRPVKGKQNTYTVESYRNTWTKSPPEIVAAGLCDTSTYKACFTVPDLSKVDATRKMAGHVGSWH |
| Ga0228593_102308 | Ga0228593_1023081 | F030329 | LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQC |
| Ga0228593_103045 | Ga0228593_1030451 | F006495 | GAIARLETDLADYWGALAHQKLSEATLLELARSQQRPNMARVAYGATSAADDDDDIRFGSMGYTTELSEDYVTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANAL |
| Ga0228593_103347 | Ga0228593_1033471 | F074505 | MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLF |
| Ga0228593_103658 | Ga0228593_1036582 | F013862 | MLPLQALLLLFCGYKFVAASAPAVEAPKSSDPKSGTSGDKKAGEPPAADVSILGAFLSLDFWLMLIPKTVTFTYTQFFMNYLPQLLHTSYGFDHGMAATLGGVAQGGSVIGLLGVGEYYKRLTKSSKALLVLVELLLCALVPFVLSLGPSVLPQLAVVPLTVLWGLAYALPFYIPPGEFAMQIGGKKGTALFTNIFDASGFAASALWNPWASALAKNNDFKTILYSQALFGAISSLTMPLCMYRQMLKEQAAKKKE |
| Ga0228593_104333 | Ga0228593_1043331 | F013853 | LQEGAGIFLWDVPMADSEPLNVPMSLAPSITTNASFCKWSKVASQLAIGTTQGKVIIFNKAEGVMQLHEKKGKHGAPVTCGDWLFDNRLGLASGLRVKISQPIAETGSKWESYSKFRLGGMLSKVPRHIRVAGDPNRLAFTLNYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGVIAGFQWLPNLVLLVGLTNGYMVTVDFGALIKLQQSNKLPDRVSAMGTSRVFNEYLQDVSAFYTANVGQRVACCGDTMVKIVHRTGVELEVHLEVDLDRQAKIGHYLDKVDWDDSAKAFACSATDGFLYVHEILD |
| Ga0228593_104409 | Ga0228593_1044091 | F074505 | MLATARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPHRTLRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLF |
| Ga0228593_105210 | Ga0228593_1052101 | F095000 | VECMRAEVHALTEERNGLRDERDGLRNELQHKHDELAAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL |
| Ga0228593_105276 | Ga0228593_1052761 | F008291 | AAEANGLRMANIPDLRSVQIASASLANDVNNLRRAVAKVEVIPEEDAKVWSFQGASGRRVLVDRRAPAPMPYGNARYTASSWKVGARSTEVHPITGQHTYDTGNLYRTVHWKDEGFGLNGRFTDAIALAGMWRNDGLNTAATRSKAVSDPTGWGTPKDNISFM |
| Ga0228593_106741 | Ga0228593_1067411 | F008473 | FLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ |
| Ga0228593_108840 | Ga0228593_1088401 | F028443 | GSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQKQTKMLPGFSPAQHKLW |
| Ga0228593_109473 | Ga0228593_1094731 | F006882 | PKPIPPQNKNDGQTRVLDPMMPVNTNEAFVAGLREYPDEDPRLWQAHKKEWQSVQGGSILTICKLHPSQRPPMVRPEDDNELGQQDVDEFIKKLVETGQPIIKAGGLGKNSLSAMGAKGILGAPKGVESNNFDGQRGFTGLTE |
| Ga0228593_109696 | Ga0228593_1096961 | F007736 | DTTLDFDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAET |
| Ga0228593_110555 | Ga0228593_1105551 | F007736 | VGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQL |
| Ga0228593_110593 | Ga0228593_1105931 | F007736 | VGMSQWIGALEKLNVIGTFTCMQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNGQKEVGGGEDVSLDFEELLECIARCGVDKYRPINEITTGGKVAAMIANILGDLNEEQVIKKATYIHAERYEPQGDAAWVALWRKLNLSTLPGFPLWEKQVHAVLHDKRVALASIFRAYSASSLLGSATDMDMEEFHDFVIEANLITDKYGFDTMVGQFTKANAGSNDDVLELHEFLTM |
| Ga0228593_111361 | Ga0228593_1113611 | F068421 | GTVGALSSSGTVTQDRRNKFDKKFDEDQAAWLNDDDRNNDALYHRSFDDGSMHLYSSAFRDGKPVDNHGKEIGGMGAKAITAYRRHDTQKGTLEGESATFTPIDEDNATLRYFAATVMKEHERGWVAGPHTVPWNPAPYRQVPYELRGLAVKTNEPWIEDVKANPEMNMATSGFNRLDDGQTDSSALLFQRRKEEDASIAANRGLIPWHDSPVLWRFPS |
| Ga0228593_111443 | Ga0228593_1114431 | F039952 | SEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGNPFT |
| Ga0228593_113117 | Ga0228593_1131171 | F032522 | TLLCGAVAMPFPSWINETTLCANGQCNKPNSMYERIADIQPGYQWNDAGGYCGSWATQRAVLSKGAWISQQQVRDHTHNCGGHDSEILSCNIDEAWKNLKIEYDAFDFNKEPVPQTAAYAKWLKAQLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPIS |
| Ga0228593_113315 | Ga0228593_1133151 | F069666 | VELKGVTRFWRALARRVLCTRLCRRDRQPVPTQLGEITDLDVEQLIEAGRPGDAAAAGRILPGLARLHGYGYVVDVAAVRAANLRNSLGDRTGILGGTAKAVLNSCISGEGEPPLRLTIAAIACAGSGVICGIPVQQMREDSVTTLDLSGRGLHVHVAMLVAYLLPATSVLKNCKLLKYRYNLGIQPAMMLAKIGA |
| Ga0228593_113691 | Ga0228593_1136911 | F102720 | NDKSMQEALDSCEASLKVWFEVHTQSMFLQGKGRKMKFDQWQELLKKGWGQMQSNNEPQPGFTPPKQVGSWQIYQDSEITGDERCRNIFKVSLSMPQAKFAFIDSQNPDQLGVGQQTADSASTTLEFDEFKECIARCALEKYAPIKQMSPAAQIINFVKNLLGTENTEECLNKATLIKAQRYQWKRYSQPLS |
| Ga0228593_115482 | Ga0228593_1154821 | F074330 | MVLNPTSTGFLLLASVVVLIASLFLTYDPVDLCAASNGLKFCVGFNNAYAFVMCIMEIIVCVVALFMLKMKQAILQKVLVAKAPLIGPITVEGLISLFLFVNITIGAFILTNMPEHGFDQTNNGYFACWAGACASLGNIGVDPAKMVDDLRAKTGVSPAFGLIISSIMVLL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |