Sample 3300031187

Basic Information
IMG/M Taxon OID	3300031187 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267089 \| Ga0228568
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_0mM_2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_0mM_2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	15666666
Sequencing Scaffolds	17
Novel Protein Genes	24
Associated Families	22

Dataset Contents

Total Genome Size

15666666

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	11
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina	1
Not Available	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina

Not Available

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007565	Metagenome / Metatranscriptome	348	Y
F008473	Metagenome / Metatranscriptome	332	Y
F009117	Metagenome / Metatranscriptome	322	Y
F028693	Metagenome / Metatranscriptome	190	Y
F038555	Metagenome / Metatranscriptome	165	Y
F039952	Metagenome / Metatranscriptome	162	N
F039966	Metagenome / Metatranscriptome	162	N
F043744	Metagenome / Metatranscriptome	155	Y
F046205	Metagenome / Metatranscriptome	151	Y
F048713	Metagenome / Metatranscriptome	147	Y
F069666	Metagenome / Metatranscriptome	123	Y
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F074888	Metagenome / Metatranscriptome	119	Y
F079587	Metagenome / Metatranscriptome	115	N
F080775	Metagenome / Metatranscriptome	114	N
F087987	Metatranscriptome	109	N
F093418	Metagenome / Metatranscriptome	106	Y
F095000	Metagenome / Metatranscriptome	105	N
F100254	Metagenome / Metatranscriptome	102	Y
F102720	Metagenome / Metatranscriptome	101	Y
F104431	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228568_100582	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1974	Open in IMG/M
Ga0228568_101036	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1593	Open in IMG/M
Ga0228568_103764	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	922	Open in IMG/M
Ga0228568_103891	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	908	Open in IMG/M
Ga0228568_104846	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	813	Open in IMG/M
Ga0228568_105822	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	740	Open in IMG/M
Ga0228568_106176	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	717	Open in IMG/M
Ga0228568_106443	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	701	Open in IMG/M
Ga0228568_106564	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	694	Open in IMG/M
Ga0228568_107336	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	652	Open in IMG/M
Ga0228568_107663	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	635	Open in IMG/M
Ga0228568_107893	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina	625	Open in IMG/M
Ga0228568_108119	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	614	Open in IMG/M
Ga0228568_108522	Not Available	596	Open in IMG/M
Ga0228568_108649	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	592	Open in IMG/M
Ga0228568_109818	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	551	Open in IMG/M
Ga0228568_109871	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	550	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228568_100582	Ga0228568_1005821	F074505	MLATARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHCPQGTARRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228568_101036	Ga0228568_1010361	F009117	FTCTQGSDIVVDDRVGTEFKCRLSVPQCKAAFVNSQKETGGAVDDTTLDFDELLECIARCGCDKYRAVEQIKVGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYVRGDALVRPAARRAARVRRAHRVRQVQGGDTDGSGRQSDRLPRQPAWRR
Ga0228568_101775	Ga0228568_1017751	F087987	SLRPGRGGVKASCGALARVQLSSRIQPSMRGKLPFQRLRQDVGGTPEERKLAAERAAKAKKRRQWLQQTFDVRNLDLFGYEPDYTFQGYRSNFGAYISVAVGFAVLLRFTTRILDFMYPTPLINENHLLFARDMSEGFALPTFGFIFKRSGWRPFYDPTYFTFSFQQGTSGRASNSTYVDLGDEPCSFVDAYGRIIEDEARCPAISGEVVGSFFDSRFRFVHVSMNRCHNGTDSQGRTQPGPCRRPDEIDRLIYEGTVTLAISQRDLDTGSKDEYTQLVSIKKQFTRHIHATYDMFFTVRFVTIQPRAFFDEYDVVNMKRQYVVLDRQEASFTDFQAERLGRWNQVDPTYVPKYAGFFFMLSDEKIDQQRMYLTIFDMFEALGGTLCFFYFVLRLVALRWNHVHFTQQIKGLDLRDLNRDMFYQFGRLV
Ga0228568_102740	Ga0228568_1027402	F079587	LDFSRTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228568_103764	Ga0228568_1037641	F028693	ALCQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY
Ga0228568_103891	Ga0228568_1038911	F043744	NDEPQGKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCTAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGF
Ga0228568_104064	Ga0228568_1040641	F048713	QMFEYDDIAHSGHMLMKVIDMVPPKLAPGKTPKKPKKAEWQLEYFILLRTKHVVHFQPNTGFVDPFEKRIRGKAIDLMQAQVTLNEEDVAVEIPAALKEGFVDDDLSDGFEIQTSRHKYILRPKESSSEAWVDRITEVMFDEMDETAPPDDATRDYNDFLVGYNGVTGASR
Ga0228568_104107	Ga0228568_1041072	F007565	ATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV
Ga0228568_104846	Ga0228568_1048461	F008473	SVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0228568_105822	Ga0228568_1058222	F080775	LNTISSRKLVLEAELKEIDEDIASNESMSRKYGAEFFTEGAARLAQSRAEKQQKLAEIKQQLAETSTSVRQGKQLLGALAENYGNMAPPTYINPEGGQLYTQQFVTTRGDSPARVLTTSPILADRRG
Ga0228568_106176	Ga0228568_1061761	F046205	PKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVD
Ga0228568_106443	Ga0228568_1064431	F102720	LKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGADARAQGYTPGNGVGNWEIFQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLTVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSAAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLKEHKKWLEVWQRLEISDMYYFPLWEKGVHDILQKHFAELTLIFLAYCRSLLGSDTA
Ga0228568_106564	Ga0228568_1065641	F069666	LDEITDLDVEQLIEAGRPWEAAIAGRMLPGLARLHGYGYVVDVATVRAANLQNGIGDWRRPSLLDGAAKDALNSCISGEGEPPLRLTIAAVACAGSGVVCGIPVQQLREDSVTELNLRVHAPAAMLVAYLIPATSVLKNCNLLKSGIDVELAKKLAKIGAEKGIMLSGMTRDQTEAGFSRQRLRTAHAILIASDLQFMPAMTALGLYNNKNIGPEGAKAITEALKVNTVL
Ga0228568_106894	Ga0228568_1068941	F038555	EDAFYDLGIELLSGRLKVAKVYGQEEPPAAEDELEWETRYFVLYDSRKMVHFDGMQNGEPVGDRGLIDLETIQSVEKVLGVPTFVMKGYKKVYLFKLEPHDEVMMRTWIGAISVELSSQ
Ga0228568_107336	Ga0228568_1073361	F074330	MLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRINPPPMP
Ga0228568_107663	Ga0228568_1076631	F095000	MIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228568_107893	Ga0228568_1078931	F074888	STLPKEVLYDFELLRQFELSGQSHTSEAQCELIQRLFPRLSASQVAKLQERRVWSAPWQLGSSYLGAPDVVVTAEKAREWQRMFDHATAFCEELFGEKVNMDGVRPSTMTCLALETLPLPVYDIMAM
Ga0228568_108119	Ga0228568_1081191	F046205	GIWECYRESDITGDPACKTKYMWRLSMPQIKMAFVDSQPQDSLQAAQSSANDESNVLDFDEFLECLARCGIDKYRAVKEVSPARAVKGFIQNLLNEMSADSVVVEATYIHAERYDAEKETKPLKGESQKDLEKWLACWERMEIMDVHLWPTWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLE
Ga0228568_108522	Ga0228568_1085221	F039952	GLARKAEVADARKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGNPFT
Ga0228568_108611	Ga0228568_1086111	F093418	LLQKHFSELSLIFLAYCRSLLGSDSAEDAMEMEMAEFHDFVSECGLETKLITFDLMSNMFIKANATNSAQVRDQHAESRRSSETKLDHLQKGDQRMTTGRTTEEKGKVKSKSDGTEAKKDAELVLYEFINMLVRIGFQRANPTFGNFGDKKPIKHLPGCLRAMIEDEILPRARKDTSAVFRETVMTELSVLKVLDDY
Ga0228568_108649	Ga0228568_1086491	F104431	TRRRRREKLCTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTRG
Ga0228568_109818	Ga0228568_1098181	F074330	PSMVLNPTSTGFLLLASVVVLIASLFLTYDPVDLCAASNGLKFCVGFNNAYAFVMCIMEIIVCVVALFMLKMKQAILQKVLVAKAPLIGPITVEGLISLFLFVNITIGAFILTNMPEHGFDQTNNGYFACWAGACASLGNIGVDPAKMVDDLRAKTGVSPAFGLIISSIMVLLQSYPYLAFDP
Ga0228568_109871	Ga0228568_1098711	F039966	IVGPKLPAIKMTDGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPTIAAAELAVLREMCEADSMPARLAQCSISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGATDDFGSAENRVAALAEPAFSPEGQLSEATAGSAGGAPALQPQLTLWMAVTDD
Ga0228568_111213	Ga0228568_1112131	F100254	PQWGSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031187: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_0mM_2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences