NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031183

3300031183: Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_4



Overview

Basic Information
IMG/M Taxon OID3300031183 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0135754 | Gp0325905 | Ga0310836
Sample NameSorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_4
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size150428370
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Plant Biomass → Lab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Emeryville, California
CoordinatesLat. (o)37.8406Long. (o)-122.2901Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031917Metagenome / Metatranscriptome181Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0310836_104704All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter3761Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0310836_104704Ga0310836_1047041F031917MSDGVADLKLAHLVELSKLGPRCRELEQEIATWLREHDVVFAGRTIPFVLMPHFISPAQQRAIRRAVGCLSAVLDRLCDAYAHDA

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