Sample 3300031174

Basic Information
IMG/M Taxon OID	3300031174 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267107 \| Ga0228586
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_4mM_2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_4mM_2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	8749508
Sequencing Scaffolds	13
Novel Protein Genes	17
Associated Families	17

Dataset Contents

Total Genome Size

8749508

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	7
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

All Organisms → cellular organisms → Eukaryota → Haptista

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007565	Metagenome / Metatranscriptome	348	Y
F007958	Metagenome / Metatranscriptome	341	Y
F028443	Metagenome / Metatranscriptome	191	Y
F030329	Metagenome / Metatranscriptome	185	Y
F030973	Metagenome / Metatranscriptome	183	Y
F035605	Metagenome / Metatranscriptome	171	Y
F039928	Metagenome / Metatranscriptome	162	N
F048057	Metagenome / Metatranscriptome	148	N
F053832	Metagenome / Metatranscriptome	140	Y
F056270	Metagenome / Metatranscriptome	137	Y
F079587	Metagenome / Metatranscriptome	115	N
F090311	Metagenome / Metatranscriptome	108	N
F095000	Metagenome / Metatranscriptome	105	N
F098503	Metagenome / Metatranscriptome	103	Y
F098718	Metagenome / Metatranscriptome	103	Y
F102393	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228586_100828	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1403	Open in IMG/M
Ga0228586_101095	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1242	Open in IMG/M
Ga0228586_101226	Not Available	1181	Open in IMG/M
Ga0228586_101709	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1001	Open in IMG/M
Ga0228586_101922	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	941	Open in IMG/M
Ga0228586_102245	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	874	Open in IMG/M
Ga0228586_102896	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	769	Open in IMG/M
Ga0228586_102943	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	763	Open in IMG/M
Ga0228586_103429	All Organisms → cellular organisms → Eukaryota → Haptista	699	Open in IMG/M
Ga0228586_104323	Not Available	611	Open in IMG/M
Ga0228586_104618	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	587	Open in IMG/M
Ga0228586_105167	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	551	Open in IMG/M
Ga0228586_105768	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	517	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228586_100828	Ga0228586_1008281	F007958	MGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFS
Ga0228586_101095	Ga0228586_1010951	F102393	FVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKKDKDKNFTGAKDMELVRH
Ga0228586_101226	Ga0228586_1012261	F030329	FWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPV
Ga0228586_101709	Ga0228586_1017091	F056270	ATNSGAVRDQHAESRRTSATKQDGRTTEVVAKVKGTNDGQEAKKDQELVLYEFIGLLVRIAFQRANPTFGNFGDKKPIKHLPGCLRAMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFL
Ga0228586_101762	Ga0228586_1017622	F079587	RSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228586_101922	Ga0228586_1019221	F028443	KAQQDRKVTDSSKGARVAKEVDAQLNLFEFINLLVRIAFWRANPQWGSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQKQTKMLPGFSPAQHKLWCQCWENMVLV
Ga0228586_101950	Ga0228586_1019501	F053832	MPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQI
Ga0228586_102245	Ga0228586_1022451	F090311	EVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWMSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLRSLRAAMNTWAVMLEARQRNQQALLSAASAFRGDGIRKAWNGWLGLLHDWEVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIE
Ga0228586_102439	Ga0228586_1024391	F007565	DGCERLGTSAGFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV
Ga0228586_102896	Ga0228586_1028961	F095000	ARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228586_102943	Ga0228586_1029431	F035605	DLNEEQVITAATYITAERFSPGTSPPKGVAAENHKEWLTTWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEAGLITDLYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADKFDEVPLPGCLSDMLTKLVLPNARRETHAQEFLEKIWPMSEVSSALDAQKEAIATFYEMVSAGRPFLELSQWFDALAGKLLFSDVTIDGYV
Ga0228586_103429	Ga0228586_1034291	F030973	KEYSEKKPKTAPAGNPETVGLGMLQFKPNGFLYTKKMQGDWNNGMLGSRNYSAVRLSEGRHWKGNLYVTNNQVMMKGHANEDVPFGYSKGPGPKFENMQHALAHKSTYLGFYAL
Ga0228586_104323	Ga0228586_1043231	F048057	RGMKKLRKLREVAAEQAIRQAPPHPFLAGVSDDEPFWRDLPDILQSQILVMIDNGMPTKKNPKPRPVERILWAGTPHTRKRTILLLVLLWAVTLAVPAILLEDLVDEVGGWLALAWALFTVFLLVPRLTRGSREVFALTSQRAIVSRRTMYCSIHSEKFYYSDIASAKLTPHRDGTATVVLTKTKVMYKPTERITFDRIRDVR
Ga0228586_104618	Ga0228586_1046181	F104431	MVPKKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVGNLH
Ga0228586_104849	Ga0228586_1048491	F098718	SEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLTVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSAAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLKEHKKWLEVWQRLEISDMYYFPLWEKGVHDILQKHFAELTLIFLAYCRSLLGSGSAEDAMEMEMAEFHDF
Ga0228586_105167	Ga0228586_1051671	F098503	FLRANPKHGQYDNKAKLVELPGCLKKMLEEVLIPNAKQDMSSLFREEIAQDAEVQRVFDEYREKLTYYYNEVNQLTALKGKADNKLSMETWMDICRGYLHFAKRKGLKHMEKSKTSGKAGEGGGLGEGAFVGDCTVSRESDITGDERCKEKFTCRLSTLEAKFAFLNSQSLEQMTAGDSSDTD
Ga0228586_105768	Ga0228586_1057681	F039928	SYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031174: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_4mM_2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences