NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031169

3300031169: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_32mM_3 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300031169 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128781 | Gp0267102 | Ga0228581
Sample NameMetatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_32mM_3 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size20554493
Sequencing Scaffolds20
Novel Protein Genes25
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii12
Not Available2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi1
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007565Metagenome / Metatranscriptome348Y
F007958Metagenome / Metatranscriptome341Y
F009117Metagenome / Metatranscriptome322Y
F016912Metagenome / Metatranscriptome243Y
F024700Metagenome / Metatranscriptome204Y
F024710Metagenome / Metatranscriptome204Y
F035605Metagenome / Metatranscriptome171Y
F039928Metagenome / Metatranscriptome162N
F039952Metagenome / Metatranscriptome162N
F043734Metagenome / Metatranscriptome155Y
F043744Metagenome / Metatranscriptome155Y
F046205Metagenome / Metatranscriptome151Y
F047450Metagenome / Metatranscriptome149Y
F053251Metagenome / Metatranscriptome141N
F056270Metagenome / Metatranscriptome137Y
F074330Metagenome / Metatranscriptome119N
F074505Metagenome / Metatranscriptome119N
F076965Metagenome / Metatranscriptome117Y
F087987Metatranscriptome109N
F090311Metagenome / Metatranscriptome108N
F095000Metagenome / Metatranscriptome105N
F102393Metagenome / Metatranscriptome101N
F102720Metagenome / Metatranscriptome101Y
F104622Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228581_100782All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila2123Open in IMG/M
Ga0228581_100885All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii2043Open in IMG/M
Ga0228581_101882All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila1525Open in IMG/M
Ga0228581_102249All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1409Open in IMG/M
Ga0228581_103009All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1227Open in IMG/M
Ga0228581_103588Not Available1130Open in IMG/M
Ga0228581_104499All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1012Open in IMG/M
Ga0228581_106453All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila837Open in IMG/M
Ga0228581_106996All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii801Open in IMG/M
Ga0228581_109843All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii657Open in IMG/M
Ga0228581_110299All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii639Open in IMG/M
Ga0228581_111256Not Available605Open in IMG/M
Ga0228581_111339All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii602Open in IMG/M
Ga0228581_111491All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii597Open in IMG/M
Ga0228581_111572All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales595Open in IMG/M
Ga0228581_112069All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii579Open in IMG/M
Ga0228581_112302All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi571Open in IMG/M
Ga0228581_112728All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii558Open in IMG/M
Ga0228581_113232All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii545Open in IMG/M
Ga0228581_114473All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228581_100782Ga0228581_1007822F095000LDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228581_100885Ga0228581_1008852F074505MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHCPQGTARRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228581_101882Ga0228581_1018821F009117MDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAEGRPRLQAWYATIPLDDNQKVGITQWVSALQALNVIGTFTCTQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNAQKETGGSVEDVSLDFDELLECIARCGVDKYRAVEQIKTGEKVAAMIANILGDLNEEQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLDKLSSFYELVSAGRAFLEIDQWLNALTEKLLFSDLNIDG
Ga0228581_102249Ga0228581_1022491F056270GQSLKEHKKWLEVWQRLEISDMYYFPLWEKGVHDILQKHFAELTLIFLAYCRSLLGSGSAEDAMEMEMAEFHDFIDECGLETKQVNFDLMTNNFIKANATNSGAVRDQHAESRRTSATKQDGRTTEVVAKVKGTNDGQEAKKDQELVLYEFIGLLVRIAFQRANPTFGNYGNKKAVVHLCNYPGSGMHDNGCLQTMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVD
Ga0228581_102428Ga0228581_1024281F024710GKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQIRDPGRDGKSKMLCTVKSNEFACDDPVYNSTQIIGRPVKGKQNTYTVESYRNTWTKSPPEIVAAGLCDTSTYKACFTVPDLSKVDATRKMAGHVGSWH
Ga0228581_103009Ga0228581_1030091F007958SASASLIAHPAAMGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFV
Ga0228581_103459Ga0228581_1034591F047450EQGTAAAKEVGAGSTSEALVVATKTKSAASQKDTEMDAELVLYEFVEVLIRISFWRANPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSAIFKEKLKNDKSMQEALDSCEASLKVWFEVHTQSMFLQGKGRKMKFDQWQELLKKGWGQMQSNNEPQPGFTPPKQVGSWQIYQDSEITGDERCRNIFKVSLSMPQAKFAFIDSQNPDQLGVGQQTADSASTTLEFDEFKECIARCALEKYAPIKQMSPAAQIINFVKNLLGTENTEECLNKATLIKAQRYQWKRYSQPLSDQTLKEHKKWLEVWQRLEISDIYYFPLWEKGVHDLLQKHFNELTLIFLAYCRSLLGSDTAEDAMEMEMSEFHDFVVESASRRSM
Ga0228581_103588Ga0228581_1035881F043744IFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVH
Ga0228581_104059Ga0228581_1040592F047450MTMTEFKDLVKDVGLETKDLKFDVMCNMFKKANALNSNAVMQQRKQEAGTSAAKMEGVGSASKAMAQTNKRSKSANKGREDEMDQELVLYEFVEVLIRIGFWRANPFHGINKLANKLVPLPDCLHQMLHEVVLPNAKRDDSALFKERLAGDKSMLTALSRYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGADARAQGYTPGNGVGNWEIFQDSEITGDERCRNKFKISLSLPQAKFAFINS
Ga0228581_104499Ga0228581_1044991F102393MMLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228581_104592Ga0228581_1045921F087987FQGYRSNFGAYISVAVGFAVLLRFTTRILDFMYPTPLINENHLLFARDMSEGFALPTFGFIFKRSGWRPFYDPTYFTFSFQQGTSGRASNSTYVDLGDEPCSFVDAYGRIIEDEARCPAISGEVVGSFFDSRFRFVHVSMNRCHNGTDSQGRTQPGPCRRPDEIDRLIYEGTVTLAISQRDLDTGSKDEYTQLVSIKKQFTRHIHATYDMFFTVRFVTIQPRAFFDEYDVVNMKRQYVVLDRQEASFTDFQAERLGRWNQVDPTYVPKYAGFFFMLSDEKIDQQRMYLTIFDMFEALGGTLCFFYFVLRLVALRWNHVHFTQQIKGLDLRDLN
Ga0228581_105592Ga0228581_1055921F007565GFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV
Ga0228581_106453Ga0228581_1064531F039928MKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF
Ga0228581_106996Ga0228581_1069961F090311VAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRSTLSSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALGSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIR
Ga0228581_109843Ga0228581_1098431F046205GPHCEQDLVGIWECYRESDITGDPACKTKYMWRLSMPQIKMAFVDSQPQDSLQAAQSSANDESNVLDFDEFLECLARCGIDKYRAVKEVSPARAVKGFIQNLLNEMSADSVVVEATYIHAERYDAEKETKPLKGESQKDLEKWLACWERMEIMDVHLWPTWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKF
Ga0228581_110299Ga0228581_1102991F074330MLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRINPP
Ga0228581_111256Ga0228581_1112561F039952RKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGNPFT
Ga0228581_111339Ga0228581_1113391F102720HEVVLPNAKRDDSALFKERLAGDKAMLSALATYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGIDQRAQGYTPGNGVGNWEIYQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLSVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSPAVMITSFCKNLLGEENTEECMNTATLIKAERYN
Ga0228581_111491Ga0228581_1114911F053251GTSRRNLHVLKLAMKEGCARATLAEEQEEAPTAKKAKHEEQIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSEEPSLFQLIQLIEDALYLDAPIALKHLQRAIASRLNSKRAPVLGALIGAGGDFGSAEEYAPPNAEPAFVPEDVLEAPQQPASSTLPPEPLLQP
Ga0228581_111572Ga0228581_1115721F016912HLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228581_112069Ga0228581_1120691F104622LVFVAGLVADSDLEGSLMLAVRAADIMVYCAFIPMILMGWDNLVRPPLKTFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGPFEEVQPLEGDAALLA
Ga0228581_112302Ga0228581_1123021F043734GAYQHAHATPSQAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE
Ga0228581_112728Ga0228581_1127281F035605TWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEAGLITDLYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADKFDEVPLPGCLSDMLTKLVLPNARRETHAQEFLEKIWPMSEVSSALDAQKEAIATFYEMVSA
Ga0228581_113232Ga0228581_1132321F076965RKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQKQTKM
Ga0228581_114473Ga0228581_1144731F024700RVALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW

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