Sample 3300031166

Basic Information
IMG/M Taxon OID	3300031166 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267113 \| Ga0228592
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_16mM_2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_16mM_2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	20171551
Sequencing Scaffolds	18
Novel Protein Genes	20
Associated Families	20

Dataset Contents

Total Genome Size

20171551

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	3
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F006495	Metagenome / Metatranscriptome	371	Y
F007958	Metagenome / Metatranscriptome	341	Y
F013862	Metagenome / Metatranscriptome	267	Y
F024700	Metagenome / Metatranscriptome	204	Y
F026197	Metagenome / Metatranscriptome	198	Y
F028443	Metagenome / Metatranscriptome	191	Y
F030329	Metagenome / Metatranscriptome	185	Y
F035605	Metagenome / Metatranscriptome	171	Y
F039966	Metagenome / Metatranscriptome	162	N
F043744	Metagenome / Metatranscriptome	155	Y
F048057	Metagenome / Metatranscriptome	148	N
F055416	Metagenome / Metatranscriptome	138	N
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F076751	Metagenome / Metatranscriptome	117	N
F076927	Metagenome / Metatranscriptome	117	Y
F079587	Metagenome / Metatranscriptome	115	N
F080775	Metagenome / Metatranscriptome	114	N
F086468	Metagenome / Metatranscriptome	110	N
F102393	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228592_101290	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1785	Open in IMG/M
Ga0228592_101891	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1537	Open in IMG/M
Ga0228592_101952	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1516	Open in IMG/M
Ga0228592_103057	All Organisms → cellular organisms → Eukaryota	1249	Open in IMG/M
Ga0228592_103379	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1195	Open in IMG/M
Ga0228592_103499	Not Available	1176	Open in IMG/M
Ga0228592_105525	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	929	Open in IMG/M
Ga0228592_105644	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	917	Open in IMG/M
Ga0228592_105710	All Organisms → cellular organisms → Eukaryota → Haptista	911	Open in IMG/M
Ga0228592_105830	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	902	Open in IMG/M
Ga0228592_107569	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	779	Open in IMG/M
Ga0228592_107653	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	774	Open in IMG/M
Ga0228592_107670	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	773	Open in IMG/M
Ga0228592_109657	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	669	Open in IMG/M
Ga0228592_110453	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	638	Open in IMG/M
Ga0228592_111276	All Organisms → cellular organisms → Eukaryota	607	Open in IMG/M
Ga0228592_112856	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	557	Open in IMG/M
Ga0228592_114609	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228592_101290	Ga0228592_1012903	F074505	VKILIRKRRISCVPFFLRGGTGRRCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQDAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPRPERTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228592_101884	Ga0228592_1018841	F076751	MPDLTFSELPIDRNPLTKKPTSETWEQGIVMSRAEQTRNRMPNVTLSQAEAVAKAAIQRGKEPMDAGFWYHQPVGGRAQEARPRQPVDKNTRGGLGSKANESNVDLVVFGHEQDGAGVSEGEHWEMDQRDWLGFKKRVGGMDANNAVVDAVVFGHDQDGFTSIKKLEEEMKKLPQFAGAAGVCSSEVSSSNIMQDAKIVPSKFTKLKNSSDVDMVVFGHDQDGSGEGPNQDMEDLEASPLFFGSAGVHTTDASLKEAAMWYGGPKGRRTTPLQHSSSSTDQSFQEMQDGPGCPQARFKGSHAFAGAAGNVGTPSALPANSDGTIAWASRKVNRPTDVMQDDFAAKDLDFRTERGAGANALPVLSQEHGAGSIKAVVFSGPDPKGNRQALGVGDLPPNATLLQKREQSRRAAVAHGCRSMAYVNESEFNSAAGLSSDEIFFANTADLVRRVKPVTRKSGYSGVTDVDMVVFGHDLEGGDKDGASMM
Ga0228592_101891	Ga0228592_1018911	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLD
Ga0228592_101952	Ga0228592_1019521	F007958	ASLIAHPAAMGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0228592_103057	Ga0228592_1030571	F026197	LMMMLPVYLTLLCGAVAMPFPSWINETTLCANGQCNKPNSMYERIADIQPGYQWNDAGGYCGSWATQRAVLSKGAWISQQQVRDHTHNCGGHDSEILSCNIDEAWKNLKIEYDAFDFNKEPVPQTAAYAKWLKAQLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228592_103379	Ga0228592_1033791	F006495	QQRPNMARVAYGATSAADDDDDIRFGSMGYTTELSEDYVTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS
Ga0228592_103499	Ga0228592_1034991	F043744	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSY
Ga0228592_105069	Ga0228592_1050691	F079587	RTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228592_105525	Ga0228592_1055251	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPMIAAAELAVLREMCEADSMPARLEQCLISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGATDDFGSAENRVAALAEPAFSPGGQLSVATAGSAADPPALQPQPSLSGIAVTDDAKEVALGMVDVGTLAELKGVSQSWLALARRVLCSRLSRCEGQSVPTQMAEITDLNIKVLVDAGRPWEAAAAGRMLPSLARLRWEGFTVSVAAVREVDLDEDEDE
Ga0228592_105644	Ga0228592_1056441	F028443	STQILLEECILPKAKRDTSGEFKKVLASDASTQAVLGEYREKLQNWLRPILRKERTTQNPNPQMTYSLWVALMDGPDSEQKESGKKPPCPKMVGEWSVQQESQITGDERTSRKNQITFKAALSIPQCRWNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMKTFLPSHDRKAMTMADATRSFLRNLLSEKTPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLWLKCWSQVTLIDVHHFPLWEKGVHDTLQQHFSALMRIFSHYSKGVSGVDSVADALEIELEEFHD
Ga0228592_105710	Ga0228592_1057101	F048057	ARGMKKLRKLREVAAEQAIRQAPPHPFLAGVSDDEPFWRDLPDILQSQILVMIDNGMPTKKNPKPRPVERILWAGTPHTRKRTILLLVLLWAVTLAVPAILLEDLVDEVGGWLALAWALFTVFLFVPRLTRGSREVFALTSQRAIVSRRTMYCSIHSEKFYYSDIASAKLTPHRDGTATVVLTKTKVMYKPTERITFDRIRDVRGAERVLGRMLPGDVAHDAGFPESDEPLPYEPR
Ga0228592_105830	Ga0228592_1058301	F102393	HVCSCFFEPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228592_107569	Ga0228592_1075691	F080775	TGEHLLHVLNTISSRKLVLEAELKEIDEDIASNESMSRKYGAEFFTEGAARLAQSRAEKQQKLAEIKQQLAETSTSVRQGKQLLGALAENYGNMAPPTYINPEGGQLYTQQFVTTRGDSPARVLTTSPILADRRG
Ga0228592_107653	Ga0228592_1076531	F035605	EKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFS
Ga0228592_107670	Ga0228592_1076701	F013862	VEAPKSSDPKSGTSGDKKAGEPPAADVSILGAFLSLDFWLMLIPKTVTFTYTQFFMNYLPQLLHTSYGFDHGMAATLGGVAQGGSVIGLLGVGEYYKRLTKSSKALLVLVELLLCALVPFVLSLGPSVLPQLAVVPLTVLWGLAYALPFYIPPGEFAMQIGGKKGTALFTNIFDASGFAASALWNPWASALAKNNDFKTILYSQALFGAISSLTMPLCMYRQMLKEQAAKKKE
Ga0228592_109657	Ga0228592_1096571	F086468	MEIDLLGEPRLKNGLTYYPGVLTDDGSVILGNIVRLQLMAEGSQPYIGYGFLKGLWLWRDQPYMRVQYMAPTRMDLPRDAIAYRAAPDASGIPELMVTNRVGDLHLNALLGPVYIEGSPLMGQLFQENVGASADGFILMRHLDPAVQRVQPLDEAFRLTPIVQAFPKTVLRAMLVPLASSKAPELRVPKCGGSCSSSISSSSTAPVTPATPHAAPPAAALPS
Ga0228592_110453	Ga0228592_1104531	F074330	MLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRINP
Ga0228592_111276	Ga0228592_1112761	F024700	GRRVALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228592_112856	Ga0228592_1128561	F055416	FSMVMRPVLRDAAARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI
Ga0228592_114609	Ga0228592_1146091	F076927	MAPPPLPCTVLPCTETSDVPGLYRGLQLAVPSHRRELQTAVSTSAGLVSALANTAVGRIVLAPGTYMLSGQLIVTRSVVLEAVVAGSVVLDGGNALRVLNVNPGSSGVVQLIGLNITRGYIESNNYGGGGVVVQSGTVTISSSSIYG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031166: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_16mM_2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences