| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031156 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0267091 | Ga0228570 |
| Sample Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_4mM_1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 8773554 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 2 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 2 |
| All Organisms → cellular organisms → Eukaryota → Haptista | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005228 | Metagenome / Metatranscriptome | 407 | Y |
| F028693 | Metagenome / Metatranscriptome | 190 | Y |
| F048057 | Metagenome / Metatranscriptome | 148 | N |
| F074888 | Metagenome / Metatranscriptome | 119 | Y |
| F076751 | Metagenome / Metatranscriptome | 117 | N |
| F076965 | Metagenome / Metatranscriptome | 117 | Y |
| F102393 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0228570_102095 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 881 | Open in IMG/M |
| Ga0228570_102183 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 866 | Open in IMG/M |
| Ga0228570_102523 | All Organisms → cellular organisms → Eukaryota → Haptista | 810 | Open in IMG/M |
| Ga0228570_102991 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae | 743 | Open in IMG/M |
| Ga0228570_103765 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 659 | Open in IMG/M |
| Ga0228570_105058 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 562 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0228570_101334 | Ga0228570_1013341 | F076751 | KKPTSETWEQGIVMSRAEQTRNRMPNVTLSQAEAVAKAAIQRGKEPMDAGFWYHQPVGGRAQEARPRQPVDKNTRGGLGSKANESNVDLVVFGHEQDGAGVSEGEHWEMDQRDWLGFKKRVGGMDANNAVVDAVVFGHDQDGFTSIKKLEEEMKKLPQFAGAAGVCSSEVSSSNIMQDAKIVPSKFTKLKNSSDVDMVVFGHDQDGSGEGPNQDMEDLEASPLFFGSAGVHTTDASLKEAAMWYGGPKGRRTTPLQHSSSSTDQSFQEMQDGPGCPQARFKGSHAFAGAAGNVGTPSALPANSDGTIAWASRKVNRPTDVMQDDFAAKDLDFRTERGAGANALPVLSQEHGAGSIKAVVF |
| Ga0228570_102095 | Ga0228570_1020951 | F102393 | RVAAFLLHPHSRPPTSSTRMMLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK |
| Ga0228570_102183 | Ga0228570_1021831 | F005228 | CVSSAMADEGMAEAKKTIVASGYKQVGSRATPEAITKEIKKLPAASGMLDSRKRALHDLAHALAYVQENHKETVCNNCKTEQCVFHLIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ |
| Ga0228570_102523 | Ga0228570_1025231 | F048057 | REVAAEQAIRQAPPHPFLAGVSDDEPFWRDLPDILQSQILVMIDNGMPTKKNPKPRPVERILWAGTPHTRKRTILLLVLLWAVTLAVPAILLEDLVDEVGGWLALAWALFTVFLFVPRLTRGSREVFALTSQRAIVSRRTMYCSIHSEKFYYSDIASAKLTPHRDGTATVVLTKTKVMYKPTERITFDRIRDVRGAERVLGRMLPGDVAHDAGFPESDEPLPYEPR |
| Ga0228570_102991 | Ga0228570_1029911 | F028693 | IDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY |
| Ga0228570_103765 | Ga0228570_1037651 | F074888 | PQGSHSPQGSSPVSSSASSFEQSLPASRHAYSYLGRQAQREAISTLPKEVLYDFELLRQFELSGQSHTSEAQCELIQRLFPRLSASQVAKLQERRVWSAPWQLGSSYLGAPDVVVTAEKAREWQRMFDHATAFCEELFGEKVNMDGVRPSTMTCLALETLPLPVYDIMAM |
| Ga0228570_105058 | Ga0228570_1050581 | F076965 | WNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQKQTKMLPGFSPAQHKLWCQCWENMVLVDIHHFPLWEKGVHDTLQGHFSVLMRIFSHYTKGISGIDSAADALEIELEEFHDFIKDSKLETR |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |