Sample 3300031154

Basic Information
IMG/M Taxon OID	3300031154 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267111 \| Ga0228590
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_8mM_3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_8mM_3 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	19649365
Sequencing Scaffolds	15
Novel Protein Genes	19
Associated Families	19

Dataset Contents

Total Genome Size

19649365

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
Not Available	2
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001682	Metagenome / Metatranscriptome	652	Y
F007922	Metagenome / Metatranscriptome	342	Y
F008291	Metagenome / Metatranscriptome	335	Y
F009117	Metagenome / Metatranscriptome	322	Y
F010978	Metagenome / Metatranscriptome	296	Y
F022338	Metagenome / Metatranscriptome	214	Y
F035605	Metagenome / Metatranscriptome	171	Y
F042124	Metagenome / Metatranscriptome	158	N
F042134	Metagenome / Metatranscriptome	158	Y
F043744	Metagenome / Metatranscriptome	155	Y
F046205	Metagenome / Metatranscriptome	151	Y
F068493	Metagenome / Metatranscriptome	124	N
F069666	Metagenome / Metatranscriptome	123	Y
F079587	Metagenome / Metatranscriptome	115	N
F086559	Metagenome / Metatranscriptome	110	Y
F090311	Metagenome / Metatranscriptome	108	N
F095000	Metagenome / Metatranscriptome	105	N
F100254	Metagenome / Metatranscriptome	102	Y
F104622	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228590_101136	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1945	Open in IMG/M
Ga0228590_102373	Not Available	1423	Open in IMG/M
Ga0228590_103248	Not Available	1215	Open in IMG/M
Ga0228590_104854	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	984	Open in IMG/M
Ga0228590_105537	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	916	Open in IMG/M
Ga0228590_105679	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	903	Open in IMG/M
Ga0228590_106020	All Organisms → cellular organisms → Eukaryota	873	Open in IMG/M
Ga0228590_106348	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	845	Open in IMG/M
Ga0228590_107729	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	750	Open in IMG/M
Ga0228590_107915	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	739	Open in IMG/M
Ga0228590_107973	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	736	Open in IMG/M
Ga0228590_108954	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	682	Open in IMG/M
Ga0228590_109420	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	660	Open in IMG/M
Ga0228590_109964	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	637	Open in IMG/M
Ga0228590_111630	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	570	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228590_101136	Ga0228590_1011362	F001682	MSVLLGLEASKLDNYPIVPMSAVAFTAIAALSNTAEITSTNIRSGAAFDNIRASWNQALKLGDFSSKLRCDYDYKDNKDFLKEVSLTGDLMEASSNDELRVSYDVTHNFPQRKTRVKLTANTGGNTIRAELDDRQLKQVSAQRDLDLGDQKVNTDVSWMVKAQTARVKLMSNLGGGNKDRVKAQIDYDTRDNSASYEVGYQHQLNDGRDVSATFNPGDKNLDVEFVDNKFESGATWTAKASVPLENAGGNLLDNAKVTLKRSWSW
Ga0228590_102373	Ga0228590_1023731	F009117	ARCGCDKYRAVEQIKVGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228590_103248	Ga0228590_1032481	F043744	ANATNTAQVRAQRQDGKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSG
Ga0228590_104178	Ga0228590_1041782	F079587	WTVLDFSRTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228590_104854	Ga0228590_1048541	F069666	PGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228590_105537	Ga0228590_1055371	F042134	RVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDKTLRECILPK
Ga0228590_105679	Ga0228590_1056791	F090311	MRKAIKSWSEFAKEALQSVRCATAALRMSETRGAFGTWHEHVCSESERDAAMRRAAASMLQSSMRASLNTWMSYAEEHAEASRVLAGALSSLQPEGRAMRSALNTWTGVMMQRRSMVVAVASLIRGEQLWGLRVWSAHAALVRRQRERVEETARQAIKSMSLQSLRAAMNTWVAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDRQVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRSTLSSLSPAKRSMRKAIKSWSEFAKEALQSVRCATAALRMSETRGAFGTWHE
Ga0228590_106020	Ga0228590_1060201	F010978	SNPLERTSVQLMLVVAGIALFANSAVDRTDDGLPWEVTLAGFCVFAVVFCAIYAKKTEVALSIVTMIAIVMPTYYVHNYEVPASNWELGSMFPLKTSKEEVLRGCFKAAPNASRFDKMLPFDLSLAHFSVLPPGLALRVNTSEIYHSGLKLDDPLTKERTHDYLLFSSPRKVKEKTESLVLLARVPSKFEVWPKNIEDYSFSLQTASNIVAPPTMFGEVTKLDKGPAIEILQRKHHLRPFMLDVYRVEYVYE
Ga0228590_106348	Ga0228590_1063481	F042124	PAGGRPSRSPSRSDVAKAASLAEEPLIPPVVRVKNSAKAGRPFSNYQKHQAKTQALKGHTIHITSVGPYISRPEQRNLDDQGLRYRSIHKEAFKPAGLWDKYEPPLGGWGFAAAGFVLPDDLPETAKRFGSFYNTHLHQFRATAPKGNIYM
Ga0228590_107409	Ga0228590_1074091	F068493	KSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRMVNRKLAFGFDRWITAFAPRDDPMSKALLYLLNRELARGWTAWYETWEVLKAKRESMRKSLGHLLHRGLSRGWGAWLEMLEERAAFLQLLSKGVRFMLNRKLAFGFVSWAQAIDRTLRQTEGSGHMSRAFLYFKNRHLARGWTAWHAEWADSVAARTIMRKSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRMVNRKLAFGFDRWIAAFAPR
Ga0228590_107729	Ga0228590_1077291	F095000	AAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLART
Ga0228590_107915	Ga0228590_1079151	F035605	EQVITAATYITAERFSPGTSPPKGVAAENHKEWLTTWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEAGLITDLYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADKFDEVPLPGCLSDMLTKLVLPNARRETHAQEFLEKIWPMSEVSSALDAQKEAIATFYEMVSAGRPFLELSQWFDALAGKLLFSDVTID
Ga0228590_107973	Ga0228590_1079731	F104622	ITVYGCEFLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKMFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGPFEEVQPLEGDAALLA
Ga0228590_108757	Ga0228590_1087571	F100254	PQWGSKYNKRELTPVPESVQLLLDECILPKAKRDTSYEFKKLLACDGPTQAVLAEYREQLQNWVRPILHRARRPDNPNPQMTYKMWVALMDGPDPETREITGPKPPCPKMVGEWTLTQESQITGDERTAKKNVLEFKCELSIPKCRWNFLRSQTVDQMGADEAAEGENSDFATLDFSEMLECIARCGVDKYSLCMKPGMLYRIMLACSYPHPPARLVSRAAAPPPKVALL
Ga0228590_108954	Ga0228590_1089541	F022338	LIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228590_109420	Ga0228590_1094201	F008291	RSATRRAAEANGLRMANIPDLRSVQIASASLANDVNNLRRAVAKVEVIPEEDAKVWSFQGASGRRVLVDRRAPAPMPYGNARYTASSWKVGARSTEVHPITGQHTYDTGNLYRTVHWKDEGFGLNGRFTDAIALAGMWRNDGLNTAATRSKAVSDPTGWGTPKDNISFM
Ga0228590_109964	Ga0228590_1099641	F007922	GAAAATYTFEQMKEQFSRADKSGKGLAGPAANAELVLYEFLNVVTRVSFYRLNPEFGELTMEHQESLLPVPQCLEQTLRECILLKAHRDDAAEFRVKTMQMPEVVQALNEARPRLQAWYASIPLDDNQKVGMSQWIGALEKLNVIGTFTCMQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNGQKEVGGGEDVSLDFEELLECIARCGVDKY
Ga0228590_110029	Ga0228590_1100291	F086559	NNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0228590_111630	Ga0228590_1116301	F046205	ACKTKYMWRLSMPQIKMAFVDSQPQDSLQAAQSSANDESNVLDFDEFLECLARCGIDKYRAVKEVSPARAVKGFIQNLLNEMSADSVVVEATYIHAERYDAEKETKPLKGESQKDLEKWLACWERMEIMDVHLWPTWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031154: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_8mM_3 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences