NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300031110

3300031110: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLW.R2



Overview

Basic Information
IMG/M Taxon OID3300031110 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133512 | Gp0324021 | Ga0308165
Sample NamePhyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLW.R2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size835863546
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria2
Not Available6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLeaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034190Metagenome / Metatranscriptome175Y
F036230Metagenome / Metatranscriptome170Y
F041209Metagenome / Metatranscriptome160Y
F051903Metagenome / Metatranscriptome143Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0308165_1032606All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales3057Open in IMG/M
Ga0308165_1058458All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria1989Open in IMG/M
Ga0308165_1064309All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria1854Open in IMG/M
Ga0308165_1071351Not Available1714Open in IMG/M
Ga0308165_1073154Not Available1683Open in IMG/M
Ga0308165_1140078Not Available1024Open in IMG/M
Ga0308165_1163894Not Available906Open in IMG/M
Ga0308165_1227980Not Available697Open in IMG/M
Ga0308165_1303852Not Available556Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0308165_1032606Ga0308165_10326066F036230MTQVNDIVQVNPDRETFGACMVVVTEVKSWGIQGYVQSAGVDGQQYIRLKSGDFEPTGGKAVWVAP
Ga0308165_1058458Ga0308165_10584581F041209MRRKLQKIATARILFLDETALRLNAAPNHTLVLPGEQPFIETTDTSSYAARYDMIAVCTGVETLLPKVFTPAERKGAEVRGVNSAVLQQFIDDTLAQAVEGLDRYPLTLVLDQASIHKNVDAIRQAFHDRGSQAIKDILLMPPNAAKRMSPLDNALFHDWKEICRQRCPVTKRTIQRVMADAWNKLPARLLHAHYKKCGLVRGQDPYFDCPDPAGHQHAS
Ga0308165_1064309Ga0308165_10643092F041209VSPGLCDQIASLRRKLQKIASSRIIFLDETALRLSAGPNNTLVLPGEHANVLATETSSYAARYDMIAVCTGSETFLPKVFTPVERRGAQVKGINSAMLLQFIDDTLAQAVEGVNRYPMTLVLDRASIHLNIDAIREAFHDRGSQSIKDILLMPANAAKRMSPLDNALFHDWKELCRKRCPVTKRTIEQVMADSWNRLKPKLLHAHFRHCGLMRGQDPYFDCPDPAGHQHGNRD
Ga0308165_1071351Ga0308165_10713511F051903MCERHACSCVEQRSLTLSTCALLISVSADMCEQIATVRRKFQRIGTRRILVLDETHRRIGDVTDRTIVLPGEPSTIETSATSHYAPRYDMIACCTSKEVMPPMIYSPKERGRGVDTEMLLQYIRNLLAQSAGALDRYPLFLLLDKATIHNERKIIEIFHDWGCQELVEIIKMPTAAAKRLSPLDNSLFNVFRQRVLHGPPLTRANIKQRMSDAWNSITERDLRPQYRHCGLMRHQNVYFDCPNPAVHRHGS
Ga0308165_1073154Ga0308165_10731541F051903VRRKLQRIGTQHILFLDETHKRDGDVQNYTIVLEGEAPYIESTNTSSYAPRYDMIACCSGTTALPPVIYDQTERERGVTQQMLLQHIRDLLAQAAGALDVYPLVLVVDRSAIHQPDNMLQEFHDWGCQEMTEVLLMPPAAAKRLSPLDNSLFNLWRQRVLSEGGLTKSNIRRRMSDAWNSITAEDIHAQFRNCGLMRHQDVYFDCPNPAVHKHRS
Ga0308165_1140078Ga0308165_11400781F034190LNGDWCFINAVLGLMAPSATHPCPICIISSSSFLHSARYRSPGDRHSIHPDQPALLTILPERIVPTPLHLFLGISNRIILDAFSELLGKERVQAALTTITTVHSAGCGGKSDLYDLNGPEISKWIKKECSASVLAAAASSSALPAAITASHSILSRWLQQLHHCLLRSDDWTAADIDAWRSVVSDIHQHWRAEAKSEPFPKLHMLHHAVDFAERHRFLGRASEAQIESFHASFNALFHKQHRNQSGNTEQRLRRSLADATLRAVQPSLNL
Ga0308165_1163894Ga0308165_11638942F051903PGEPHLIESSCTSKYATRFDMIACCSGKVALPPIIYSPKERAKGIDKAMLLAHIRNVLAQAAGALDTFPLLLVLDRASIHNEEKILQEFHDWGCQELTEVIKMPPAAAKRLSPLDNSLFNVWRQRVLKDGPLTKRNIKARMSDAWNSLTAADIHAQYRHCGLLRHQDVYFDCPSPAVHRHDR
Ga0308165_1227980Ga0308165_12279801F034190AVLGLMSPSATHPCPICIISSSSFLRSARYRTQRDRHSIHPDQSALLTILPERIVPTPLHLFLGISNRIILDAFSELLGKERVETALKSITTVHSAGCGGKSDLYDLNGPEISKWIKKQCSASVLAAATASSSVPAATTASHSILSRWLQQLHHCLLRSDDWTAADIDAWRSVVSDIHQHWRAEAKSEPFPKLHMLHHAVDFAERHRFLGRASEAQIESFHASFNALFHKQH
Ga0308165_1303852Ga0308165_13038521F051903GDVDSYSIFLPGQPPLIESSSTSRYAARYDMIACCSGKAVLPPVIYAPKERQRGIDTAMLLSHIRDLLAQAAGALDEYPLLLVLDRASIHHEDKILQEFHDWGCQELTEVIKMPPAAAKRLSPLDNSLFNLWRQRVLADGALTKSNIKQRMSDAWNSITSAQLCAQYRNCGLLRHQDVYFDCPD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.