| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031001 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0068071 | Gp0115370 | Ga0074017 |
| Sample Name | Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 5 (Eukaryote Community Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 149417677 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 11 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 8 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → forest floor → wood |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Dalarna County | |||||||
| Coordinates | Lat. (o) | 60.97 | Long. (o) | 15.87 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008027 | Metagenome / Metatranscriptome | 340 | Y |
| F014218 | Metagenome / Metatranscriptome | 264 | Y |
| F022330 | Metagenome / Metatranscriptome | 214 | Y |
| F033676 | Metagenome / Metatranscriptome | 176 | N |
| F033678 | Metagenome / Metatranscriptome | 176 | N |
| F033679 | Metagenome / Metatranscriptome | 176 | N |
| F044225 | Metagenome / Metatranscriptome | 154 | Y |
| F052339 | Metagenome / Metatranscriptome | 142 | N |
| F079432 | Metagenome / Metatranscriptome | 115 | Y |
| F079514 | Metagenome / Metatranscriptome | 115 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0074017_1001109 | Not Available | 592 | Open in IMG/M |
| Ga0074017_1003573 | Not Available | 707 | Open in IMG/M |
| Ga0074017_1323521 | Not Available | 590 | Open in IMG/M |
| Ga0074017_1325582 | Not Available | 608 | Open in IMG/M |
| Ga0074017_1360209 | Not Available | 500 | Open in IMG/M |
| Ga0074017_1363771 | Not Available | 586 | Open in IMG/M |
| Ga0074017_1367430 | Not Available | 503 | Open in IMG/M |
| Ga0074017_1394950 | Not Available | 632 | Open in IMG/M |
| Ga0074017_1396938 | All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1027 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0074017_1001109 | Ga0074017_10011091 | F079432 | GSTTKMINRNFFNLVNSFSSRTPMIAMRVLNRPAASFSSFLNANDSSVLEPEERPNYYNCYDDDEIFETPTPERNFDSSIETENRQTTPSEEPSSGVFNSTFDDEVL |
| Ga0074017_1003573 | Ga0074017_10035731 | F044225 | DYIHDKVDELVDGVKSKVGLAGEAVKHKKEELSEEARHAAAVAAEEARHAAKEATLGDHTGTAKEKLHDAKRDLKQKAAKFADDHL |
| Ga0074017_1323521 | Ga0074017_13235211 | F033676 | DKDYEWLIFDDLRLCMDEKLLPEQIKLHFENYTDLSVRSEDPSTSTTRVSFSVANLKPKFENFYFSMKKISTPAIQDEGRMSARVKGSGLSIRGRFVLSRDPKTGAILSDHKINVHIDRLQIDILQAKHDVLLTLGTMFFGNYIKQKTEEVVKEALTTTILGYGDVLNAQVFSKLPTMEGLAQQGIEAVKSGIPV |
| Ga0074017_1325582 | Ga0074017_13255821 | F033679 | SLVILAVFAAIVSAQTKPNWPPQFSSSVFVRGWGPRDSREDHFFRWFYDSVKNKDRLDGEQRWLGERYRAVTIYDHAAKLEWHVYHQEGLVSCYYGKLNHSLPRPNFNNARFIGKAELNYRVVDHWEERDQTNRVVSQIYDRADNQKIVRIDLADPRGAITWDFHEIDNAPIDADLFDIPADIKAVCNPF |
| Ga0074017_1360209 | Ga0074017_13602091 | F008027 | RLAMPHGIKILVANYGGKDVTNIAKQQHKSNAHFVASNSYFGDPMPGTPKFLHVIYSFHGVLGSVSIPENQQFHPHPPKLVILGALYGSADVTEKVKGLVPYGADHGHFQVENAHFGDPNPGIFKNFSIAYVRNGELKQVAAKEHDSIHLN |
| Ga0074017_1363771 | Ga0074017_13637711 | F022330 | MNFDYQITRRILLLLDGGEVHLHFVVHDQDEGSTSTSEDVGESSLEEGLATFILVDLGETVKSTVVQDFLSTRLHHQSSSNGIEGIRKETRERSNDLGNEELEEDGGLGVRQEGSLGSIVTTEIAGSVGYDTEDGDTESLVESLNTIN |
| Ga0074017_1367430 | Ga0074017_13674301 | F079514 | IALAVAGLIGLAAGFTLRPALAGLFFFVLAAAWLCSLALLIINACFLNRNMNSQCARTGNAQLSSGCENIRMYHTILYTVFGPLVGLFVPTLLVAAGYLWRTTSLYRKQEYDAYANQAGPVPVGSSRM |
| Ga0074017_1381260 | Ga0074017_13812601 | F052339 | YHYHSHTMGILKKLFNKKKGTESVSLTEECGYYEFEVQQWTKFGNLVKNKNSELRTLIINPEGISVINMHSREVILTIPFFDMKWFELHPAKSQWLVKIAGEDKGVIYFSSRQAAAIHKIAVKCLKTLIRTRRLRLQEHSQSPDLRSVMADMYDDCQDKIDLDVIAPDSPQLKKLNFQAMASPLRPVC |
| Ga0074017_1394950 | Ga0074017_13949501 | F033678 | AVFAAVALAQSAKPTWPAEFSASIFSRGWGPRGDDRDHHFRWFFSTSRNASRIDGIQHWLGESYWASTIFDHRNDVEWHVFHQGGLAVCFYSKLNHTMITPNFTRAIYIGKAEIDYRVVDQWLERDERGQNVLRVYDRVDNQKIVRMDISEHERNSRRERARSFQFHELDVAPQDPDLFNLPQQIKVICNPLPSIQNHHQY |
| Ga0074017_1396938 | Ga0074017_13969382 | F014218 | MGLETMDLDGLGVKLQTLLLVGEELLNIFALITLKLDHLSHLTIDHDGAIA |
| Ga0074017_1398579 | Ga0074017_13985791 | F052339 | TPPLASMGILKKLFNNKKKSASESMSLTEESGYYEFEVKQWTKFGQTMRDKSSEIRMLIINPEGISVVNVYSKETILSIPFFDMKWFELHPAKNEWLVKTAGEDKGIVYFSSKDAAAIHKVAVKALKTLIRSRRLRLNEASTDNTDIRSVIAEMADDCEDKIDLDVLAPDSPQLRKLNFAAKSSPMGRAQA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |