NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030719

3300030719: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300030719 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0135150 | Gp0323847 | Ga0307926
Sample NameMetatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size51523379
Sequencing Scaffolds6
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Risofladan, Vaasa, Finland
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036088Metagenome / Metatranscriptome170Y
F037999Metagenome / Metatranscriptome167Y
F057772Metagenome / Metatranscriptome136Y
F059653Metagenome / Metatranscriptome133Y
F069660Metagenome / Metatranscriptome123Y
F088271Metagenome / Metatranscriptome109Y
F091298Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307926_102168Not Available2268Open in IMG/M
Ga0307926_102347All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2185Open in IMG/M
Ga0307926_104380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1608Open in IMG/M
Ga0307926_126526Not Available578Open in IMG/M
Ga0307926_131958All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon516Open in IMG/M
Ga0307926_132950All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307926_102168Ga0307926_1021681F059653MNNKEALQSQTEYSNDNLLEKLLLDRGLDAGGTYAAANAKDIDLAAASLYFTLAAHPDLREGSFAVKYNGAQLIALAKTILRKYDLETMPT
Ga0307926_102347Ga0307926_1023473F091298ELAVYDSGWGMSSAAKLRVASSAQVLEYLSIGEPVQDTRVTGLLDLDPLVVSRWLCGEDLRGIYQPIVVRHSVLDGLDLEGRTFYEIVELVGCHVATAHFKHAYFYSSLLVEDCVFEGDFDGRGMQSDGRVVFHNTVFAGWADFSALSVRGRADLVDVSFPGGTNLLRILANGSHALLGREVNLSGCRFRPADIPAGLEATRCGILPFGERSPGGAERQWGELVGREEGDPVDVVGGPLFASHQSGTVDDDDVRTALVLASGCDVK
Ga0307926_104279Ga0307926_1042791F057772MPLLYQRPGTKRLASGAEAGAAVLHQDPLDGAAADGAGFASPMSNLKIEMSCAQLALGADVGIHTGAFATDGCPENSADALI
Ga0307926_104380Ga0307926_1043803F091298LMLSAAMLRVTSPMQVLQYLSIGESIQDTRVTGLLDLDPLVVSRWLCGEDMRGIYQPVVLRHCILDGLDLEGRTCYEMVELVDCTVSTAHFKQAYFYSSLLIEACIFGGDFEGRGIQSDGRVVVHNTIFNGWADFSGIHLRGRADLMNVSFPGGTNLLYVLANGAHKSLGRDIQFNGCRFRAADVPTDLDVARLGITPLGQGDLSGLEG
Ga0307926_116208Ga0307926_1162081F037999TLGAVLENVLSPEAAPDLFVFGKFNEMPMAERVKLMMTDPAELIDYVRRESHVVWKAVEAFIRRENDEGRDALIEGVAVLPELMSQLGNIPHRVVFIGNQGDNHKENIKKSAEENEHDWMRDVSDQYIGAFAMFVKRMSAYVEQEAKKYGFEYIEMDKELFGDVTEAVVKSLGLSAR
Ga0307926_126526Ga0307926_1265261F069660RQMTAILKLLGLIGGIVPIILTLITAFETPGFGAEKKKVILDAINLFYDKVAEGNVMPITKEKLSGIASGFIDIAVAFFNLVGWFKHNSPTVST
Ga0307926_131958Ga0307926_1319582F088271MEKAEIKRIADYIKDLEEGLVEWDYRGITTQGHLTKLYGIIERLMKATYETKDQELKPLLATLEMKARKCKQCIEARTGVRN
Ga0307926_132950Ga0307926_1329501F036088MGLVGLAFLGVVLGAAGTEFLRAKRPDIIEKIEDAARRFVDSVCPSESNDEKTQ
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