Sample 3300030680

Basic Information
IMG/M Taxon OID	3300030680 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128996 \| Gp0213240 \| Ga0187748
Sample Name	Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 24_T1F_2612KB8 (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 24_T1F_2612KB8 (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	96721750
Sequencing Scaffolds	19
Novel Protein Genes	22
Associated Families	17

Dataset Contents

Total Genome Size

96721750

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	8
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
Not Available	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales

Ecosystem Assignment (GOLD)
Name	Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Ecosystem Assignment (GOLD)

Name

Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Pennsylvania
Coordinates	Lat. (^o)	40.7982	Long. (^o)	-77.8599	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Pennsylvania

Coordinates

Lat. (^o)

40.7982

Long. (^o)

-77.8599

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000076	Metatranscriptome	2620	Y
F000085	Metagenome / Metatranscriptome	2467	Y
F001154	Metatranscriptome	763	Y
F001767	Metagenome / Metatranscriptome	638	Y
F009535	Metagenome / Metatranscriptome	316	Y
F015603	Metagenome / Metatranscriptome	253	Y
F031106	Metatranscriptome	183	Y
F036711	Metagenome / Metatranscriptome	169	Y
F045108	Metatranscriptome	153	Y
F048099	Metatranscriptome	148	N
F057101	Metagenome / Metatranscriptome	136	Y
F064392	Metatranscriptome	128	Y
F070138	Metatranscriptome	123	Y
F080873	Metagenome / Metatranscriptome	114	N
F083686	Metagenome / Metatranscriptome	112	Y
F086596	Metatranscriptome	110	Y
F098651	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0187748_1001003	All Organisms → cellular organisms → Eukaryota → Sar	1166	Open in IMG/M
Ga0187748_1012014	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1451	Open in IMG/M
Ga0187748_1021637	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1314	Open in IMG/M
Ga0187748_1021770	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	515	Open in IMG/M
Ga0187748_1021863	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1822	Open in IMG/M
Ga0187748_1022833	All Organisms → cellular organisms → Eukaryota → Sar	537	Open in IMG/M
Ga0187748_1024634	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1095	Open in IMG/M
Ga0187748_1031987	Not Available	640	Open in IMG/M
Ga0187748_1042295	All Organisms → cellular organisms → Eukaryota → Sar	574	Open in IMG/M
Ga0187748_1043612	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	592	Open in IMG/M
Ga0187748_1046692	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	599	Open in IMG/M
Ga0187748_1052710	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	522	Open in IMG/M
Ga0187748_1061773	All Organisms → Viruses → Predicted Viral	1200	Open in IMG/M
Ga0187748_1063717	All Organisms → cellular organisms → Eukaryota → Sar	939	Open in IMG/M
Ga0187748_1075187	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1589	Open in IMG/M
Ga0187748_1075693	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	565	Open in IMG/M
Ga0187748_1095019	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	637	Open in IMG/M
Ga0187748_1096048	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	618	Open in IMG/M
Ga0187748_1098647	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1310	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187748_1001003	Ga0187748_10010031	F015603	MKALAGAVLLLHWATAQNLAPACPHEDDPNVGPSFEIPEGSPVYRDIKANQTHRWLYRNENNLTVMNQPDQYRKLIINLEPCHGVVFLLVRKTSRCFPNPYSCIDITPGQEQREASTCQWTHFLSEIDGSRDGSPTFFEVPLSATKYFISVYAPVNSAYTLTVLSDIGAFPRPGENGRLTARQLTEMQVQISWDAAGYFPTGISETKQYWIYSAMLLDADNRTNMAVFLRPDKIMNTVCGLQNNTDRQYTIIPATQCSNGKCNATIDGVITNKRYVFNVVAESYRGNKMAYAGLIMRTDWEVIRQAASDRTLRVVGAVSGSVLGMVILIYFVMLKLYG
Ga0187748_1012014	Ga0187748_10120141	F001767	MASSEPLIQTKAGHSKASIFYGADEYLEELKKKYEKDHEIAALKMAQPDEGDPHAPAMKASKEKMLMTEKNDQNRSLKTGRLFPIPNKPDPMPQNLAFLFTKITPEQMVYMWNVLTAIFTVQCLMIVSYCLALASFPEHYWTCTLCFGIPFAYICIQQIYIDHDVMHGVTFPPYEFQKYLTHPFSDFMSLPWEEFVLEHARHHASTVDLLIQGEFGWDPEEFHYALQQWAGEMGPNWYKYLLTVPWIPVIHFFGLNDTGALFAIEWWMSFPEEGAGGKCNKEFWSKWFPRRVKHNCVVWSLWLCVWLLGTWPLGRPFSEGWKFVLPVTCAARVGFSLAWMFITNFTHSLPWNKFLASDPGRNRPILHNLMALAVGGKHRWNEMLFHDVHHAFPNALGTLSQRGRFHGWKKVHDASVEVLYRGLWKPNGDEETEMQKQQKKRSLLMRQGQ
Ga0187748_1017264	Ga0187748_10172641	F000076	SFCLGSTVWEDDCCSIAMAEEEGQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTLGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0187748_1021061	Ga0187748_10210611	F070138	MTAAEAKFYRDGYTHRTVLFDGLQSAKAEHPGSLNFSAYRQGRDRQYLGVNGKNYYAKPWGNDSSNVQAVINGPAYWKRVYYRENIAARFAREDAEAAERKAMAEQAEAMATGTAAVRRTQSDTALHKKNPETVKDAYAHIKENMKPFVEKQGKPKIRPIGPGERLTFFNTLQNKYHMKAGGKNMSWDVSKQTHRSTKNELTWILSNYFRTDSQAILNGAGSDDK
Ga0187748_1021637	Ga0187748_10216371	F080873	GSEDSAMKRVACLVACLILQVAVGIGSSNFLGSQKDHALMAEPEPIAEAAPNKPTKPLFGPEAYVLGIIAPGSFLLGFGAVVALRYHERYNPSSDGEVVERQPENLDEDVYGSGVATLVRDSFSLVDGKGDLALRISRLSSSLLLMVFVIALQVFVILQMQSLVASRAVTEIRQIYGRYEYVMYGAEMSHVYLTPNGFPRGLDKQYFDPSNFGRLTEDEQASACRIPFSQPQLLLPILFLWTLTIIADLRRCGDLFVRLILATPTITSMRDAVVESDGECEIIVGLTRPLKALLMSTCILPRYFIDVYLLWLGCRWLAATPSFGDLLLNAVALEFILLLKDTLYAGVVPDRNKRATQNTLIQPWQKTEPANYRVFLSSFLLILATVAWVLYYVYRFQAVLPDYKWDVAKVCASYVKAITSGKSS
Ga0187748_1021770	Ga0187748_10217701	F001154	SRIGPSVNGKRWPRRCPWCASRTLEIMVKVTVGKAEDPWCEIELTEEDVEDWKKGVDITEEKFKEVIQLPPITLENCHEREDGDLQWDEITFEEEVNGKYWHAVIMALHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0187748_1021863	Ga0187748_10218631	F001767	ICCTSQSHFPLFPFCKLRFNMATKAPLLGGGKKGGHSKASIFYGADEYLEELKKKYAHDHEIAALKNLLPGEGDPNAAGVAASQDKMLKVEKNNENRSLKTNRLFPTANKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFVTQVLMVIGYSAALATFPEHWWTCTLLFGIPFSYIAIQQIYIDHDVMHGATFPVYDFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPFSTNWYKYILTVPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKDFWNKWVPRRLKHNGFVLSLWACVWLLGTYPLGRPLSEGWRFMFTVSFFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQNK
Ga0187748_1022833	Ga0187748_10228331	F031106	EVRKEKLLEMYREFAIELHTGMYLTQLTSNRDYADIHVQLMEDLTTLKLDQSNGRIIEFPLTNVSKVYRIVKNDDKWYAAGTPLPNASPHAEQIVVVEFMRRKLAFVFKELQVSQRFLICMELLIRRAQQKQAMRSLTPTFPPHHTQSRQCPTPRLVHDAMQRPIPSPPER
Ga0187748_1024634	Ga0187748_10246341	F083686	APRSNLTRSYDYYLRANKNPVAPMTPQPEQMQIVVASSCYCFASVGMLLFNKFAVQDFPLECCLVWAQLFFAASCLSLFAFPYIHVGSALDLFRWCMVVPFYCGMLLTSILALKTAPMSLVIVLRNTSPLGTLVIERFYPEPLRISSFMLGSIFLMIAGGVMYVTQLPQENWQGIGWVFLNSGIAVVDRLLQRLLLSKEQCPVDISKTGITLINNLVGMLPVGIAAYATGEIEKLPLVYGTLSHWDKFYICMTCIIGLTISYTSIWAQSLISATSFLVMINANKFLIIGIEAFGMHSKALNHIQIFGASLTILGGVLYGRSRQAIELEAEERKSLLPRK
Ga0187748_1031987	Ga0187748_10319871	F057101	KKRQDTKAEDLEKLYETLERARSPTGLLTVKIGEMESGRFIGKVKPDKEVERLARKFRLDDPVASRFTELIHRRKKDGEIDRMHKDLNTIEQHLRHCKRANALATLLVGKLLEGEVDELPDLTEAEQIMEKYRLDEDAKSKLREIIEKRAEDKNEILVRVRKHLDNCTNPSSMLCKIARPLIDNENLPDPPERPQGKGEKGGGKGKDRHDRD
Ga0187748_1042295	Ga0187748_10422951	F036711	RFARGLCAMPVWQNVNLKQKAIFEIIQREDARNLPYDLQDEELDFFIRGLACGPHAKTYLPQLVEREKNPISIARGYAPPTYSRVVKLRFYGPDPLMRDAGSNWPSGCEGEIMEYIVGWRWLYAYWDGPLVDEVEDAWKTTQWPDIARKDWTWESLRIVSPPYWVPEDGRPWREAKADATRLRVAKGKGKG
Ga0187748_1043612	Ga0187748_10436121	F086596	ILAQAHLSLKKIDLIRRDSIHRNSQMMRTFGLVLPFLAVGTSNLRGDGGNYVDMVQCTGSGTLPTQPVCFSGSVLMQTFDIEVVSFDGKIGTVNLKAEGALNAECEGAQFEDQDNAITIENDKGCGLGMYDYNVRYCPDQDSLIVNLVKPLNVRVVLNSKLCPVAGEV
Ga0187748_1046692	Ga0187748_10466921	F086596	FSLERVDTNKTPTKKLGAGIAMFRVLFLVFPCLVAGSSNLRGDGGNYVDTVQCTGSGTLPTQPVCFSGSILLETFDIEVVSYDGQIGTVNLKAEGSQNAQCDGAQFENQDNAITIENDKGCGLGKYDYNVRYCPDQDSLIVNLVKPFNVRVVLNSKSCSGEV
Ga0187748_1052710	Ga0187748_10527101	F086596	VKSRAAKTCSHHRCCQTRPAMFRLAVAALPFLAFGSSSLRGDGGSNYVDTVQCTGSGTLPTQPVCFSGSVLLESFDIEVVSYDGKLGTVNLKAEGSQNAQCDGAQFENQDNAITIENDQGCGLSKYDYTVRYCPDQDSLIVNLVKPFNVRVVLNSKSCSGEI
Ga0187748_1061773	Ga0187748_10617731	F015603	LNFPFSKSEATEMSIKAFAGAVSLLHWAVAQDLSAACPHEDDINVEKHQEIRDGVSVYRDIRFNNTDRWYYMNENNVTVMNQPDQYRKLIINLEPCRGVVYLFVRKTRRCYPNPYSCIDLVPGQERREASGCQWRPDSWTHFLSEIDGSRDGSPTFFEVPLSATKYFISVYAPENSAYTLTVLSDIGAFPRPGANGRLTARQLSELQVQISWDAAGYIPTGISETKQYWVYSSMLKESDNRTNMAVFLRPDKIMNTVCGLQNNTDRQYTIIPASQCSNGKCNATIDGVITDKRYVFNVVAESYRGHKMAYSGLIMRTDWEVIRQAANDRTLRVVGAVSGSVLGMVIIIYFLMLKLYG
Ga0187748_1063717	Ga0187748_10637171	F009535	FFFPKRLCNRTLIPIMARGSLLPFLVAATLAVFAIRDLLSVVTFVGVPSSARGAGASSIPRSVGVDYLLRNGPKDADPPLINPASAAGPAHEVTFKKRPFGIARYAPGATGTGAVVMEVTPKSRYPGDPQGQAFVAGVQPGWVVKAVNGQDVTGVPFEGIMESLDDEVLDPVAALSLNLKESGTVTNFDSSTTADKSYGAVGESTFEFGGGQKAELPITVTYVEQR
Ga0187748_1067686	Ga0187748_10676861	F000085	QEVILCQRIRIIMARYFASLISVGLVHAQNWPTCQEDNVVMRNAGRALFTNLQGFGATVGCFQDDCQNTDKFVASSIESCTKVCQSLPECEFWVWGQEEGEQKCWFRLGDDGREAGEGWISGSRSCHPPGQQAIVMGNFDCWIDGFNYDTCCDPKFGPSGNSQCWDGVFNYDRCCFPKEE
Ga0187748_1075187	Ga0187748_10751871	F064392	GVFSWLCFDLNVFRFASFFADFFMDFLDFVVKASGTPSSRRMVEPDDPLVVNVVGRHKERENQDLQGEYHMIGMVHGRPAYRKPGTRTVIRYWPVADRWLIDREGVQESDVCNAYAEQGGARHPAVEELVWRVWESQHRQHIRDPEFLVTAAPGTIQVLGRASGKENWALNGEYKLIGLHQGKVAYQKAGKFKHAIRYWRVGDRWLIDLEGLRDVDICNAYADAQSTSYPGEIRLSWHIWDSTRQRHILDSSLCTLVTPSCIEVVGRESPKENMAMNGSYHLVGLHAGQPAYMKEDGSGHAIRYWPREERWLIDLDGLRDTEICNAYAEAGGTGAHMHPGHLNLVWHVWETSRGRHLTDPAVRSFVAPHSVRISGRDPYKENSTINGDYELVKIVEGKPSYKKVENDHVLRFWPAEERWIIDLEAGFHGGDVANAFADAKGAEHPGNSELLWYVWETSRGRHVPDEDVIADAIWLPQVDWSKVPGLD
Ga0187748_1075693	Ga0187748_10756931	F086596	AQGNPRTPGQNPTLRAHSVQFLGAMLRSIVALLPLSLAAGSSNLRGDGNYVDTVQCTGSGTLPMQPVCFTGSILLETFNIEVVSYDGKVGTVNLKAEGSQNAECDGAQFENQDNAITIENDKGCGLSKYDYTVRYCPDQDSLIVNLVKPFNVRVVLNSKSCAGEV
Ga0187748_1095019	Ga0187748_10950191	F098651	GLLRLVSMPAVRGRVGRKPLTEYQGWPKGIYPMSDGWVPPCYPKEEELIAYEERMNARKKATLVKRHLCMKEPQLQQLRKREFAQKSEYSMVAYGIAEGEYSGEGDDRSYFAIVFYEPSKKSKVERAFKSTGLELADYEQVVVDPDSKMEQEEKFMYAHGAGDVGECILGEYEYQVVPKGSPEYDDPWGPTHPEGRFWE
Ga0187748_1096048	Ga0187748_10960482	F048099	VLFPPYKGRGSNAMSFAANLTKIVAGKKSEIADREKIAQSWKEKEATLLDEAVNLFKSRCVKEAELQKTEATISFEVITREVPDFPKRILTDSTYFVDSWPMGTTAESWFYATRGVNSSWSPGAPILFAEVLQAMLPKFVDRVKDLGFLDCNHEAGTWKVAVSWPTPEDSSEKKKRRRD
Ga0187748_1098647	Ga0187748_10986471	F045108	MALAFVGPAVGSGPVVPERITSSRSSERSFSETPRGTSVVSVTLGALLARRCTRSVLKSRTLQRATPSRGVQVSTGLEVPEEIQDISVAGRDVDTPHWSQRPMEDAKGGLTLAQLDWPNVHGISCGASGILFLYELVRFCLGQPPSELECYAAALIYAVIYASRFDGIRTLAPHFRVTFYATTGWCIYYIAHLLAATNPAFFGHWVYPTGIVFLASSIYFYKHWIERMYRHFVEDRFRPYYVPGLVGLMYFHWLDTVDMMNQWLDPQYWEHVVVDLPDQAWTIADVRLTGLFMSSMALFMITLHNKGVLTGGKNTLITVLFTIFVPALFLTGTHATLQASFP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300030680: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 24_T1F_2612KB8 (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences