NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030645

3300030645: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 32_T1E_2612EL1 (Eukaryote Community Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300030645 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128996 | Gp0213248 | Ga0187756
Sample NameMetatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 32_T1E_2612EL1 (Eukaryote Community Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71053071
Sequencing Scaffolds18
Novel Protein Genes27
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP25922
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium4
Not Available3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP24561

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Pennsylvania
CoordinatesLat. (o)40.7982Long. (o)-77.8599Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000023Metagenome / Metatranscriptome5736Y
F000085Metagenome / Metatranscriptome2467Y
F000241Metagenome / Metatranscriptome1481Y
F001051Metatranscriptome792Y
F001767Metagenome / Metatranscriptome638Y
F002609Metagenome / Metatranscriptome543Y
F003025Metagenome / Metatranscriptome512Y
F004604Metagenome / Metatranscriptome431Y
F004725Metagenome / Metatranscriptome426Y
F004926Metagenome / Metatranscriptome418Y
F013530Metagenome / Metatranscriptome270Y
F016275Metagenome / Metatranscriptome248Y
F016665Metatranscriptome245Y
F018723Metagenome / Metatranscriptome233Y
F020176Metatranscriptome225Y
F048097Metatranscriptome148Y
F057101Metagenome / Metatranscriptome136Y
F058692Metagenome / Metatranscriptome134N
F060930Metatranscriptome132Y
F070138Metatranscriptome123Y
F085084Metatranscriptome111Y
F098651Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0187756_100417All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1146Open in IMG/M
Ga0187756_114188All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP25921220Open in IMG/M
Ga0187756_119616All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae752Open in IMG/M
Ga0187756_125685All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium683Open in IMG/M
Ga0187756_128028Not Available605Open in IMG/M
Ga0187756_128834All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans700Open in IMG/M
Ga0187756_138444All Organisms → cellular organisms → Eukaryota569Open in IMG/M
Ga0187756_141926All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans1005Open in IMG/M
Ga0187756_151039All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans543Open in IMG/M
Ga0187756_157743All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum570Open in IMG/M
Ga0187756_162105All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae614Open in IMG/M
Ga0187756_166771All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456679Open in IMG/M
Ga0187756_174180Not Available615Open in IMG/M
Ga0187756_188909All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium855Open in IMG/M
Ga0187756_190669Not Available612Open in IMG/M
Ga0187756_193331All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium567Open in IMG/M
Ga0187756_194196All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium737Open in IMG/M
Ga0187756_195635All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592604Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0187756_100417Ga0187756_1004171F002609CTLCFGVPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWSSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMQQGK
Ga0187756_100791Ga0187756_1007911F085084KGPPVASPVPLKATMARRPDDTRGSLIFQEGKCIEGDYYIVAVYDDPATCTISFSAYELENDCTYTYPLTYSQFDALFQYDSELMNPSNQDGRFHWVIERLDFVQDKRGQKVLCLGEEATAEVDDEADLVQEKPKATSAVPANVGGKIDGATRAKLLKELDTQDDAKLHAALVKSEGARKRFIAELHAKRNLEQLKASQRLQKA
Ga0187756_112823Ga0187756_1128231F020176DNEKVLGCGVRRMLLKRADCVYDGIYRFHVERRDLSQMMFDFRDAYDDPYHHYKDKSFEHDVDTALRAAILPHLVQFKELHCKDSQMELVSHISGTALPWEKAVVQHFPVTFRVLLDSFMNENQIALENIKLEFREDHGYKIKDPELLDRWRLFHRSHAQYRIISTDEAMEQEHL
Ga0187756_114188Ga0187756_1141881F001767MATSAPLLGKEGKKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDFWWTCTLCFGIPFAYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRIKHNAFVLALWTCVWMLGTYPLGRPLSEGWRFMFTVSFFARVGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHH
Ga0187756_119275Ga0187756_1192751F000023DEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDAVRKMEKQRNMDEQNW
Ga0187756_119616Ga0187756_1196161F003025ALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMQQGK
Ga0187756_119772Ga0187756_1197721F000241SFLTPAASSCSRPAHFAMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRDCSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187756_125685Ga0187756_1256851F001051MGNTLATDTIPVLCTMVDVHNPKAQDMFYFCNVSSGGAATKVIGRSQTLSVEVGITTVLSFTVYECPEPVFTPETARCLGLLRVPVERLAERYSSGIFQQWFNLDTTTDPRMPAGDLQSLVSRFEQSYADAVADVYQPKICLSVIGTAFEVQRGTRQTCSIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEEIRRFNV
Ga0187756_128028Ga0187756_1280281F004604AAAGLAVGAHAGLAVAFRARAARRAETKPAEKSKYVETVADQRLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187756_128834Ga0187756_1288341F013530TAIRAKMNAEAKTADQFFEEINSGSALTEDVFASFLNGLDGLELLDGHAEKLFSNMAGEAGEISKEGFKELVRVFYKCVKATVMSEEMSIKSKTIRRLEVGEVLEALEGPTMEEATKVKRLRCLATQDECMGWVTLAGNQGTSFLEAGGNFYTCVKETLITDGLCVQDSKTVRRLAKGEVVEVLEFQKKDATADVRRIKGKAKQDGAIGWITIASNAGTTFLEPC
Ga0187756_132950Ga0187756_1329501F000023RGCRKRSAYLEFMTVTLEELEKRLAAIEKSLEADGEGGVLPSRKTGGDAQIMKKVATRLQDFESQITAQLANLQTDFDKKLSHVNRGAAATKPVDGAGGAAGLDTMAEDLDELKYDVGELKDLLGNNKGEVNHIRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLD
Ga0187756_138444Ga0187756_1384441F004926HDFNGTAAHVGAELFRKAQKANFSTLVIDAAPRKNGTHNDNTVLLDPLNLSVEEHAALAEYNHNQQLIENILCRFDSRTSQMTPWDSDWAGGTEGSDIRIAKEYSLDVRKINHAKEVASEVFPLERAVTPFSEYKLRLGIAIMIEPGIEPKTADAVRQWVNKGGKLKVGGDVLVGLKRWETLVPKTPEV
Ga0187756_141926Ga0187756_1419261F048097QLGERSPRNAMAHGNLSDLIFLALVGVTVQWLAYPATLFEDLGPLKAQFKAQSPDMEALIKFGAGLLLFLGMTFSAVSWNPVNGKMAGFGAFVTMGYFIYSVFKADSEVFLPRLFYAYAGVILLGALHIFAFPSNPLPPKSPEVKNNHGNFSDLIAISLLGVALSWYFYPEHLFQDLGPLKAQFRSHSADLATLIKFVAGLMVILSLMLSGVKWNPINGKLSGLGGFVAAGYTAYSTYSADKEVFVPRLFYAYSLVIFLGALHIFAFPSNPIVKKGKKEKKEGKKE
Ga0187756_151039Ga0187756_1510391F016275GDTDQFGPYYIRPPPYLINFWGISSLNLFWTSDASVEKVGVRDIYALEFQIFKNPLWSFFYIFSVFIFMYHACVGWKKVTPVLGIPRGHIWRVELIGYGIMIVMGLVYISFPLYVMATKPFGGYESSIQIPGRVE
Ga0187756_157743Ga0187756_1577431F004725LWKSRSQTDLLQFSVAIVPMATSAPLLGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNDENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFP
Ga0187756_160425Ga0187756_1604251F057101DIEKLYEVLEKARSPTGLLTVQIGKMECGQFVGKIKPDKDVERMARKFKLDDHVTSRVTELKVWRKRNGEEDRAAKDLERIEYHLRFAKRPNALCTLLVGRLLEGEIDELPDLTNAEKIMTDFKLDEDACSKLREIIEKRSPDEERVLTSVRKHLKSASNASSMLC
Ga0187756_162105Ga0187756_1621051F018723WALRPLRRAREGHGAMTAEKTGDGKGNPAAKKGGKEPFVQQFELKDVYPHFCDRKTKLLPLADVPYVLRAMGLTIYSEEEKSIREQVEKVDGMGKPVSMKTMQGWIEEHGSKYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKAETFDKIMKGGDSAVGTAIKGDSCPLDEFLNFLQK
Ga0187756_162580Ga0187756_1625801F000085HRQTFGTTGYSAGVMLRSLPRLMYIGIVAAQNWPGCQEQNTVIRNAGQALFTNLQGYGATIGCFLDDCMSSDKFVASEIESCAKVCFSLPDCKFWVWGTEEGEQKCWFRTGEAGREAGEGWVSGSKACAPPGTTVMPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0187756_166771Ga0187756_1667711F001051MGSALATDTIPVLVTMVDVHNAKSQDMFYFCNVGSGGAATKVIGRSQTLSVEVGITTVLTLIVYECPEPVFTPETARCLGVLRVPVERLAERYSSGIFQQWFNLDTKTDPRMPAGDLQSLVTKFEQSYADSVNDIYQPKVCLSVIGSSFEVQQGSRSTFGIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRLNTPS
Ga0187756_174180Ga0187756_1741801F003025LEWWMHFPDEGPGGKCNKEFWSKWVPRRVKHNSFVLCLWALVWLLGTYPLGRPLSEGWRFVFTVSFFARVGFSAAWVFITNFTHSLPWNEFLAQDPGRTWPVLHNIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGSRAL
Ga0187756_182226Ga0187756_1822261F070138GLGQLPPDTMTAAEAKFYRDGYTHRTVLFDSMQDAKAEYGGALNFSAYRQGRDRQYLGVNGKNYYAKPWGNDSSNIQAVINGPSYWKRVYYRENIAARFAREDAEAAERKAQAEIAEALSTGAGEAPPRRSQSESALQKPKTLDAKDTYAPIKENMKPFVEKQGKPRIRAMEAGERLHFFNTLHNKYHMKAGGKNLEWNVSKQTHRSTKNELNWILSNYFRTDSHAVLKGAGHD
Ga0187756_188909Ga0187756_1889091F058692MSKPYSTFQGAYARQSQSAGISPRMDPESMSSFGFGKRKRLNVVSILINVLTPWLVFCGVFASMSFSTHHESPVLAWLAVVAGLAVAGGAGVMARRTKMQDQDPTWYTFAALALGLATVSAAVLGDMNYWYNMQPYYDIENINTYPSVNPAREKGQQLMDAGRVYFEDGTGLDTSKAMAFRNLDRYCVAPIVFGQEPLASYDFWAVGVNCCSGTTADFRCGEFDNPKARSGLRLMREDQRPFFRLAVQQAEAAYNIKANHPLFFYWMQD
Ga0187756_189985Ga0187756_1899851F000085LELLRAISLFRRCFRQGRPHGKARLPGSGSGSFAMVRALALALACSVARAQNWPACQEQNTVIRNAGKALFTNLQGYGAVIGCFLDDCMSSDKFVANEIESCAKVCFSLPECTHWVWGTEEGEQKCWFRTGDDGREAGEGWISGSKSCYPPGTTVLPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0187756_190669Ga0187756_1906691F016665MESMKRSPTFLVGTVQQKDILGEFQKREQHYTEEYSKNKPLCFSARAFQQPHPAKVRMGYKDADATLTSPMLLGVCDGVSQLEEFQMDPSLLPNELLRTCEELAMLQLMPDTNIAPQDQYRGPISLLKEAYQETTSYGSTTVLLAALDNSTRIHGKLHPMIAVLSIGDCELLMLRRTNGRQSELEAVF
Ga0187756_193331Ga0187756_1933311F004604ETKPAEKKYVETVADQRLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187756_194196Ga0187756_1941961F060930ETKNAQLAMNQKSPGSIPSVHPSWKPFGPGFGIHVFRNVIATAGLRMFCTPCTTAIEKATGNSNSMTTLAGDFAGNVCAACLSAPVHQLYGYTVTTPELRTLPAAEQRERMVSFLKNQYLDTSNGRTRLSGLVPRDLFMRSMYVAVAYTMYSTVERTLVANWPQ
Ga0187756_195635Ga0187756_1956351F098651GEMPAVRARASRKHLTEYQGWPKGIYPMSDGWVPPCYPKEEELIEYEEKMKARKKATLVKRHLCVKEPQLQRLSKRAFAQKSEYSMLAYAIAEGEYSGEGDDRSYFVIVFYEPAKKSKVERAFKSVGAALADYEQVVVDPDSKMEQEEKFMFAHGAGDPGECILGEYEYQVVPKGSPEYDDPWGPTHPEGKFWE

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