| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300030561 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131206 | Gp0296511 | Ga0257200 |
| Sample Name | Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-2W (Eukaryote Community Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 69126819 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 16 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Hordeinae → Hordeum → Hordeum vulgare → Hordeum vulgare subsp. vulgare | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia | 2 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1 |
| Not Available | 6 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 1 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Montana | |||||||
| Coordinates | Lat. (o) | 46.9233 | Long. (o) | -110.8694 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000358 | Metagenome / Metatranscriptome | 1237 | Y |
| F001623 | Metagenome / Metatranscriptome | 661 | Y |
| F006461 | Metagenome / Metatranscriptome | 372 | Y |
| F012845 | Metagenome / Metatranscriptome | 276 | Y |
| F024234 | Metagenome / Metatranscriptome | 206 | Y |
| F041620 | Metagenome / Metatranscriptome | 159 | Y |
| F043718 | Metagenome / Metatranscriptome | 155 | Y |
| F044225 | Metagenome / Metatranscriptome | 154 | Y |
| F052994 | Metagenome / Metatranscriptome | 141 | Y |
| F056224 | Metagenome / Metatranscriptome | 137 | Y |
| F061214 | Metagenome / Metatranscriptome | 132 | Y |
| F064332 | Metagenome / Metatranscriptome | 128 | Y |
| F064333 | Metagenome / Metatranscriptome | 128 | Y |
| F076785 | Metagenome / Metatranscriptome | 117 | Y |
| F079571 | Metagenome / Metatranscriptome | 115 | Y |
| F085035 | Metagenome / Metatranscriptome | 111 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0257200_1011216 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 927 | Open in IMG/M |
| Ga0257200_1012595 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Hordeinae → Hordeum → Hordeum vulgare → Hordeum vulgare subsp. vulgare | 891 | Open in IMG/M |
| Ga0257200_1014368 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia | 850 | Open in IMG/M |
| Ga0257200_1017181 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 795 | Open in IMG/M |
| Ga0257200_1017289 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia | 793 | Open in IMG/M |
| Ga0257200_1017854 | All Organisms → cellular organisms → Eukaryota → Opisthokonta | 783 | Open in IMG/M |
| Ga0257200_1018687 | Not Available | 770 | Open in IMG/M |
| Ga0257200_1023806 | Not Available | 699 | Open in IMG/M |
| Ga0257200_1026297 | Not Available | 671 | Open in IMG/M |
| Ga0257200_1028598 | Not Available | 648 | Open in IMG/M |
| Ga0257200_1031362 | Not Available | 623 | Open in IMG/M |
| Ga0257200_1033343 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 606 | Open in IMG/M |
| Ga0257200_1040070 | All Organisms → cellular organisms → Eukaryota | 558 | Open in IMG/M |
| Ga0257200_1040766 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum | 553 | Open in IMG/M |
| Ga0257200_1046193 | All Organisms → cellular organisms → Eukaryota | 521 | Open in IMG/M |
| Ga0257200_1049667 | Not Available | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0257200_1011216 | Ga0257200_10112161 | F041620 | AMRRMQEIAHAMSKEWIANLAQNIKQKSHEAAENYGREQHKAGVIAAQGKPFFAALTTCLEEDVNEIKRQLQGDVTASGTNIQTVKLTEVKITRSRFPWFDARVTHQDSIIVLEYSKGLGVAGDASLDRKIFNFTFHVADDDTLSVQEAFGDNPRQFNQPDELAAHILQLLFSV |
| Ga0257200_1012595 | Ga0257200_10125951 | F079571 | AVIVPIMVDHFDNTPLPDYHGYDSNALGKFDYTLSGIRIGSTGLVPSKVKVEFRYKAEANPSQLKMERQRMLMYIEASDIQVAFKDVKWVYNRHTIPRFTDNGTIDLATAGKGITLKLKAEMHDYQAPEHAHNITELLSDQKERKMFTVVRAECTIDDFHVRISDTGASNVFYEMLAGIWGTKIKHQLENLIEVKINLLADKFDKQLYDVVRRATQPTLAEETKDALISAGKSAAEKVKDAAEEAKKSLQSM |
| Ga0257200_1012707 | Ga0257200_10127071 | F064332 | CLKPAAGSGDGKNLAWALNIFNQTTAALSGNTSPKRGGKPTIFFSFGGQSQGGATWDHLLSSAATATTFGQNAAKLVTTVYKLIGNKTYVGFDLDVEETATNLPNLPSFVKAFRSLASYDEFPLQLCSLSGLASPTSAEHFKVAIMQQVGPAQQGINFLNMMVNNVDSSCAVMSTFWRDPALDFIPAGNKILGVWGEIISAWILHGPGCTDGADPLFPWVKRNGVGIGIWQWWTGGTAEITALINQVRSG |
| Ga0257200_1014368 | Ga0257200_10143681 | F064333 | AYADAINIFDEKISQWNPNGRPYEETFRNLVYLGRSYWELHKALHKVDEMYEPLWLLREIFTDIYPWSLIWKGHDSVYRHVDSAVYTWEQEMLKNRRDDLAEPIKRDVIIKYRHDTDIAVMRYYAKILRLIILPPFEAAVHPVTKHIIEPLAESIPAPLREFIDIKQMFEDLYKGIVADSINVVLRADGPDDAFRSVTIGN |
| Ga0257200_1017181 | Ga0257200_10171811 | F001623 | LNHSLKTNETKMSLDPLIRRMSMIAGIFAFIGVIVGVVALATNYWTMGNMVSPGMPVTSPNGTMMMNEKVDWTWNGLFYWCTTRENSGCQTRFWTTTFILCLLGLIFLLVGGIFSIWEMFQTSDRRFAIPMLFFVACVLMTAGLFDYGSWDRLNSHSSRAMISAIVFGYAALPISAFIAGRYSAYERYMNNGHVHNGQKYVPASTNGN |
| Ga0257200_1017289 | Ga0257200_10172891 | F064333 | TPHLGKVVGIIKSPMREAYADAINLFDDKISKWTPTDPMEKSFRDLDYFARSYWQLHPALRKVDDMYEPLWLLREIFPDIWPWSLIWKGHDSVYKHVDNAVYTWEQAMLKQGKTDLAEHIKRDVIIKYRHDTDISVMRYYTKILKLIIMPPFEAVVHPVTKHIIDPIAEMIPEPFREFIDIKQMFEDLYTGIIEDSIQVVLRADGPDDAFRSVAIGH |
| Ga0257200_1017854 | Ga0257200_10178541 | F061214 | RLVNGFAEITICLALKETPINGGLTYEGPKVAEYLGR |
| Ga0257200_1018687 | Ga0257200_10186871 | F056224 | NANMSKVAYVAEEENDSERTATQLPSPQSSSEYNYDLTNTISYNEDESLFFTQMQRCGSFLMPVIENDHHVDDAINQVANYFVESQNNGVQSDIDGFFGNFECKDAKLEQLNQRKAYLEMALANTLNEINYL |
| Ga0257200_1023806 | Ga0257200_10238061 | F052994 | WITMILSVLFVQFVLEFAGVDRLFSYLVITNILGSLAPNLVTLYSQNFGGELQFQQINGECIISPPSEFTWVLIIPFGTLLTVSCFLTLKVYLVFRNLETSLGNIEYKQLFSYPAVLVLLNVPISVNYAMMKSPNFXLTFASMIMYKSIGMINALQFRRASNTKAKWMKESQQDCILRTMSQEGDSSYT |
| Ga0257200_1026297 | Ga0257200_10262971 | F024234 | ILVSNKVTRDRERTSQMAQYLAQAEQLLGAHKTALEVGVAAVAVTAAAGGAFALYEHHETDQQKHAKHRLHIILISGKELHHDGKKQIYVVFHQGHLGIKSTPVEDQDPDFGNQEFELGILDKHKNLNVEVHEHGAVHDAGLGKGHVELKELTDQPQDFHVHLQKHGHLKLQLWLTEN |
| Ga0257200_1028598 | Ga0257200_10285981 | F044225 | DQRSYATQAADYIHDKVDEVVGGVKSKVGLAGEAVRHKKEELSEEARHAAAVAAEEAKHAATEAKYSDHTGTAKEKLHDAKRTIKQKAAEFADNHL |
| Ga0257200_1031362 | Ga0257200_10313621 | F012845 | KATELYKKDINHMPRVLYSRYRKVLTFKEKKTKGLPISQIEEGLNLDVEGEDLKQKIEERFEDASRMDCYLFYVYGKIYEKIDENIERAIEWYQKGVDVDTDSCLKNHLLCNEAWRMKCKRRLHKLQARKGLQILNFNKNRED |
| Ga0257200_1033343 | Ga0257200_10333431 | F000358 | GGSNTKGLWLCEQIYPPDDGRTCIPPEKLEKAYQKNLIQRPTAGGDEDLDEDMDSKIDKSIKEVWAYYDKKGKGFLTKSEAETFFKDAFEIMALRKGRKPKELLPPNISQGQAVSQSIQKLAKGSDRVDFSSFEEFINMSDLDEALGIFIGQTGPIDVKNKVQMVDTQQLSAQARAENGPKPIYRDYPDD |
| Ga0257200_1040070 | Ga0257200_10400701 | F006461 | SLLLTVFLLSLLFVATTDGFRVEIINKVAPCPGRNYCTTKMFWANYAQQDLCEGSSKNFTDDMIPPTGLGIQENGMYCRCCGNENGCTNPDNAGMQLIINNGNCGSYSLNAPFYCGAHPPNAESVINVQMSGSWPYCVATLTRKSNAPGCNNSC |
| Ga0257200_1040766 | Ga0257200_10407661 | F085035 | WVNKFAPKGAEEDLFVFVMPHFAKMEKITLAYELSRANLEAPKNWVFVNATNVLEKNLPFLDKIQLDHIYSHLYGVAPQRLHRADADTKTVKECLAKVFPDSERFKDAIFLEMSQENNKF |
| Ga0257200_1046193 | Ga0257200_10461931 | F076785 | FFFIPFFLFVRQVHKVNENVFFFLKCLHGNLNSLDFLEDGLTVDFGQVSGLDFHSDSDKLLSDGVLGGSVEHLRLDLGAVGGPNDEEDLVSLTTFGVVFKVIDGISTVVGRKVFHEVVIARAGGSSKVDDDFFLISRKLEKSISKRVSKLEFLVLVQNIIRNGDSGRHGDLMT |
| Ga0257200_1049667 | Ga0257200_10496671 | F043718 | DGVLGNVEDVLNGLTSPVSQLLQTVVQILNIPSGTNPLTFIQDLITKLEDVLAQLLGGVGSGVDDLTSGLETDVNQILAQLTQILNIPQGTNVIGFVQQLLAQLEPILQQVLTLVSQVLEALLGKNNLVGDLLGSLNDLKFAVLLQKLVGTLTQIVDGLTKTGGI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |