Basic Information | |
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IMG/M Taxon OID | 3300029912 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133355 | Gp0289635 | Ga0247050 |
Sample Name | Cryconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-A3a |
Sequencing Status | Permanent Draft |
Sequencing Center | DMAC, Technical University of Denmark |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 295863540 |
Sequencing Scaffolds | 23 |
Novel Protein Genes | 23 |
Associated Families | 19 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella | 1 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum | 2 |
Not Available | 6 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Cryconite Microbial Communities Around The Greenland Ice Sheet |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | aquatic biome → cryoconite hole → cryoconite deposit |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | Greenland: Kangerlussuaq | |||||||
Coordinates | Lat. (o) | 67.09 | Long. (o) | -50.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004608 | Metagenome / Metatranscriptome | 431 | Y |
F007576 | Metagenome / Metatranscriptome | 348 | Y |
F016828 | Metagenome / Metatranscriptome | 244 | Y |
F017369 | Metagenome / Metatranscriptome | 241 | Y |
F019363 | Metagenome / Metatranscriptome | 230 | Y |
F038474 | Metagenome / Metatranscriptome | 166 | Y |
F043059 | Metagenome | 157 | Y |
F044449 | Metagenome / Metatranscriptome | 154 | Y |
F045483 | Metagenome | 152 | N |
F046195 | Metagenome | 151 | Y |
F050165 | Metagenome / Metatranscriptome | 145 | N |
F056237 | Metagenome | 137 | Y |
F058359 | Metagenome / Metatranscriptome | 135 | Y |
F063103 | Metagenome / Metatranscriptome | 130 | Y |
F070459 | Metagenome / Metatranscriptome | 123 | Y |
F074174 | Metagenome / Metatranscriptome | 120 | Y |
F079909 | Metagenome | 115 | Y |
F083559 | Metagenome | 112 | Y |
F100817 | Metagenome / Metatranscriptome | 102 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0247050_1000114 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 23039 | Open in IMG/M |
Ga0247050_1000470 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales | 14781 | Open in IMG/M |
Ga0247050_1004132 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella | 5772 | Open in IMG/M |
Ga0247050_1006148 | All Organisms → cellular organisms → Bacteria | 4707 | Open in IMG/M |
Ga0247050_1007057 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales | 4359 | Open in IMG/M |
Ga0247050_1007435 | All Organisms → cellular organisms → Bacteria | 4243 | Open in IMG/M |
Ga0247050_1011461 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 3338 | Open in IMG/M |
Ga0247050_1017095 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae | 2609 | Open in IMG/M |
Ga0247050_1019923 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 2368 | Open in IMG/M |
Ga0247050_1025848 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae | 1993 | Open in IMG/M |
Ga0247050_1033315 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum | 1671 | Open in IMG/M |
Ga0247050_1038783 | Not Available | 1499 | Open in IMG/M |
Ga0247050_1046229 | Not Available | 1320 | Open in IMG/M |
Ga0247050_1047724 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica | 1288 | Open in IMG/M |
Ga0247050_1050302 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1236 | Open in IMG/M |
Ga0247050_1071302 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 934 | Open in IMG/M |
Ga0247050_1078303 | Not Available | 864 | Open in IMG/M |
Ga0247050_1079479 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium | 854 | Open in IMG/M |
Ga0247050_1094285 | Not Available | 739 | Open in IMG/M |
Ga0247050_1096526 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium | 724 | Open in IMG/M |
Ga0247050_1102415 | Not Available | 688 | Open in IMG/M |
Ga0247050_1107146 | Not Available | 663 | Open in IMG/M |
Ga0247050_1137185 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum | 540 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0247050_1000114 | Ga0247050_10001141 | F058359 | MISASECFHSATLELVRSTPIKQRLICAYRKHLANLTAEQVPT |
Ga0247050_1000470 | Ga0247050_10004701 | F045483 | VTETRRQSAPTAKPRRLVSGLSVLGLSLFVLTGCAVPGGYDVNSLHLQPESALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVLAFFSQTLAADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWREGETTKYWTRISSDE |
Ga0247050_1004132 | Ga0247050_10041322 | F019363 | METGSFGIAPKNMAHFGWSKTETIDQVHGIGPFTSTVIDAVYELNEKGVFLLTSLLLPGIPTTSNPPDCFPLKVGAKARSERGQGIIIGARCSPYNELTQYWIRKPNGDRFWATIQELRT |
Ga0247050_1006148 | Ga0247050_10061485 | F083559 | VNDCAALDSPKSPSNYSSSKPSLIDLSVLPHTVHEFGVEARKVGKAWEAAFNGPIQSWADAETGQTTYGVTVRLSRLKDPVTHELYSTNILFYLPEDAMLGMHNVYDMARRFPFTRIRGPRTPVPHCPPRIGNLWYDANPEGVIMEDVRQSPATLPDGRPGFFVTGQGYRGKVMLPDGLFIHDVGVYGGYLDPQERPSQLELQHLFGGIEFVPGKTGTQEDLFLTELGENVWVKGIVGNAVDELHVESYKNSVRLPSARTDKVLIGARSMSETKLLPYFESADPSGLRGYGLCGFVDGLPPAIGAEVWEHVHRVGLGSNFIPSPELGGHIGLIHVVLERNNPAYPETHDPAYPDIEEQYEGWVVWLDFDENGAPHVKACLRAITPDDVPRCYQGAGELFDTKRVAFPISLYRVGESLRVGYGWGDRALFQAEFDYQTVVRRLAA |
Ga0247050_1007057 | Ga0247050_10070575 | F079909 | RERFPEAARREPSQALYSLAQAFARHDDATEAAVDLLVRECVLPEIEEQLQRTLTYPPLLVLLKTLRETDPQRSVDARRLSAQVLGELSGKRLWAVRKRLVASATRAVLGARPIFDELERGGMKVDRTRAARGFARRLEEAVSELAGTRVLPANLLARLAGAEEEPSQAVPAVAIALPADAPP |
Ga0247050_1007435 | Ga0247050_10074351 | F007576 | MGDNPEDRVAEFESIWYEVVEAVNAGRTSGLVCPECQHPDGLQVEESQGRVSVSCPNCKRLVEVGIATA |
Ga0247050_1011461 | Ga0247050_10114615 | F070459 | MAASSPPGTPAEPELLSVVQGGIAIIGTQYLAGLREAEARQMLDAAEHEFQSLPPPEAQARQAACQQEGTALYRHASSFERMLITRAAERRIRRLRGG |
Ga0247050_1017095 | Ga0247050_10170953 | F044449 | MAEIGEPERVVRRERENEPVITPAQPVTTPELEPAH |
Ga0247050_1019923 | Ga0247050_10199231 | F004608 | ARRHCRFPTTDGPTPMHPTFDQTRPQPSRWDQHGAEYVRSNIDWCARCSRRLVALNPGLMVEQALDLSQELSLDDNLRSKSPELVAEDLHRVDLQTED |
Ga0247050_1025848 | Ga0247050_10258481 | F045483 | AGLVYPGSAGVHTNDYGGSPGNYIGKGAVAATGKSATTVHTQLEVLAYFSQTLAADGWTQTAADDTATTPEGFRAKDISWVKNSLHLSYLVEVWTVGETTQYLTQLNANE |
Ga0247050_1033315 | Ga0247050_10333151 | F050165 | MNQTFERALWASTPALRCLAPLDAILAPALALYWIKTLPASGGLVGAVLGVFCLWIGAKRAYRALFEFEAYRWMTLRLAKLAIATWVVMAMVKLVWFIQGS |
Ga0247050_1038783 | Ga0247050_10387832 | F083559 | EEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNASEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN |
Ga0247050_1046229 | Ga0247050_10462292 | F074174 | MIDLSERTRRISGSRLLDILQQYDAKSVIDPFMGYPTHLNFLKRHGISVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDMFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYQDDMADIPPSELAWHYIRETERLVTQNALRNTVRRGDFNATLAATTADAVFIAPPGRNAHKKADARIWMWEAWWQGDPYLDIERYYRDTIFVQRTNEDSSYDRALGAVFAAAESAPLIILQTTLQNAAHFKALMHDFRPHIEIISPHADETYVVGRR |
Ga0247050_1047724 | Ga0247050_10477241 | F017369 | ALKFRLSMPLFDKPFPCPAVSTGSGAVCDAQMDVFGDHALCCHNTSSLGFRHNNIRDILGHSARAAGLAAVAIEKKNQIDGSNARPGDITVQQYHRGFASTAFDITITHPLQKKFIEIAMEEAGVVAQEAHDRKLKKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL |
Ga0247050_1050302 | Ga0247050_10503023 | F100817 | MDEVVWLASAHMIATLPSQQRIDEIATELAPDVVRIRSNVAPDWSEHPAIYIRVLLADDASLGDRLADVTGRIGTKLFEELGLASLDHIPYFRFRSQSEQARLKDAA |
Ga0247050_1071302 | Ga0247050_10713021 | F043059 | CANVIQPAEPIGPNNPAALAAIRAAYIKAGEQKYFRARMTSESAGKISESTVEFAAPASMHMVMKTDNVEQIVINGTHYLKTDGKWMRLPISSGNLIEQMRKDPAAIAAFEKTISGAQIIGPEPVNNKPAMAYRYYQAATVGGGLASSAGWVKFWVGANGLPLKLESDTVGRVLGFSSQSKSTIYYTDYGVSVRVVAPI |
Ga0247050_1078303 | Ga0247050_10783031 | F056237 | MAHNDRALCRCSIRIPSARNRCPAFAKDKYLESMIGDVGQARTKAAMLLLPIATTSSRTCTKPTVVCCFICV |
Ga0247050_1079479 | Ga0247050_10794792 | F063103 | MRWFFGTFAVVTAVLFLSFVAWIATRVMHADAANYVVGQIMIYDLCAIAVILAYSGFVGAWHLWEKLTGRMEAERDETGPNS |
Ga0247050_1094285 | Ga0247050_10942851 | F016828 | YKREMEKTAEQTYTDLLRQLASPSATLPQVLADTFRDIERMHSMGHITDWQLKNAREAYAATIEREPRQGAPRSPETRADERG |
Ga0247050_1096526 | Ga0247050_10965261 | F045483 | MANPRRLFSGLSVLGLSLFVLTGCVVPGGYDVNSLHLLPEAALVYPGSTDVHTNDYGGSPGNYVSKGAVAVTGKSAITTHTQLEVLAYFSRTLAADGWKQTQENVRAATPEGLPAHWVAWDKPKLHLSYFVEVWTVGEATKYYTQFGSNE |
Ga0247050_1102415 | Ga0247050_11024151 | F045483 | RLFSGLSVLGLSLLLLTGCVVPGGYDVNSLHLLPESALVYPGSTGVHVNNYGGSPGNYVSKGAVAVTGKSATTVHTQQEVLAYFSKTLAADGWTKIGEDDRGTTPEGIPSKGIAWVKDSLHLSYLVTVWTVGETTQYLTQLSANE |
Ga0247050_1107146 | Ga0247050_11071462 | F038474 | YTECACVVTGAVEGASYCSDICRDRDGQSEEMEVGCECGHPPCDTD |
Ga0247050_1137185 | Ga0247050_11371851 | F046195 | MKVSRRWIEWAHGPGAEDGQPLATSLCELASAPGSGSILVGDHALIAELVDVAELYVNPCRGDALHEMGPWWMGQPRRIIFEGRASLRAASSAAKSPTVDGQPE |
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