NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029912

3300029912: Cryconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-A3a



Overview

Basic Information
IMG/M Taxon OID3300029912 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133355 | Gp0289635 | Ga0247050
Sample NameCryconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-A3a
Sequencing StatusPermanent Draft
Sequencing CenterDMAC, Technical University of Denmark
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size295863540
Sequencing Scaffolds23
Novel Protein Genes23
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum2
Not Available6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCryconite Microbial Communities Around The Greenland Ice Sheet
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomecryoconite holecryoconite deposit
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationGreenland: Kangerlussuaq
CoordinatesLat. (o)67.09Long. (o)-50.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004608Metagenome / Metatranscriptome431Y
F007576Metagenome / Metatranscriptome348Y
F016828Metagenome / Metatranscriptome244Y
F017369Metagenome / Metatranscriptome241Y
F019363Metagenome / Metatranscriptome230Y
F038474Metagenome / Metatranscriptome166Y
F043059Metagenome157Y
F044449Metagenome / Metatranscriptome154Y
F045483Metagenome152N
F046195Metagenome151Y
F050165Metagenome / Metatranscriptome145N
F056237Metagenome137Y
F058359Metagenome / Metatranscriptome135Y
F063103Metagenome / Metatranscriptome130Y
F070459Metagenome / Metatranscriptome123Y
F074174Metagenome / Metatranscriptome120Y
F079909Metagenome115Y
F083559Metagenome112Y
F100817Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247050_1000114All Organisms → cellular organisms → Bacteria → Proteobacteria23039Open in IMG/M
Ga0247050_1000470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales14781Open in IMG/M
Ga0247050_1004132All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella5772Open in IMG/M
Ga0247050_1006148All Organisms → cellular organisms → Bacteria4707Open in IMG/M
Ga0247050_1007057All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales4359Open in IMG/M
Ga0247050_1007435All Organisms → cellular organisms → Bacteria4243Open in IMG/M
Ga0247050_1011461All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales3338Open in IMG/M
Ga0247050_1017095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae2609Open in IMG/M
Ga0247050_1019923All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2368Open in IMG/M
Ga0247050_1025848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae1993Open in IMG/M
Ga0247050_1033315All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum1671Open in IMG/M
Ga0247050_1038783Not Available1499Open in IMG/M
Ga0247050_1046229Not Available1320Open in IMG/M
Ga0247050_1047724All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica1288Open in IMG/M
Ga0247050_1050302All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41236Open in IMG/M
Ga0247050_1071302All Organisms → cellular organisms → Bacteria → Proteobacteria934Open in IMG/M
Ga0247050_1078303Not Available864Open in IMG/M
Ga0247050_1079479All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium854Open in IMG/M
Ga0247050_1094285Not Available739Open in IMG/M
Ga0247050_1096526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium724Open in IMG/M
Ga0247050_1102415Not Available688Open in IMG/M
Ga0247050_1107146Not Available663Open in IMG/M
Ga0247050_1137185All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum540Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247050_1000114Ga0247050_10001141F058359MISASECFHSATLELVRSTPIKQRLICAYRKHLANLTAEQVPT
Ga0247050_1000470Ga0247050_10004701F045483VTETRRQSAPTAKPRRLVSGLSVLGLSLFVLTGCAVPGGYDVNSLHLQPESALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVLAFFSQTLAADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWREGETTKYWTRISSDE
Ga0247050_1004132Ga0247050_10041322F019363METGSFGIAPKNMAHFGWSKTETIDQVHGIGPFTSTVIDAVYELNEKGVFLLTSLLLPGIPTTSNPPDCFPLKVGAKARSERGQGIIIGARCSPYNELTQYWIRKPNGDRFWATIQELRT
Ga0247050_1006148Ga0247050_10061485F083559VNDCAALDSPKSPSNYSSSKPSLIDLSVLPHTVHEFGVEARKVGKAWEAAFNGPIQSWADAETGQTTYGVTVRLSRLKDPVTHELYSTNILFYLPEDAMLGMHNVYDMARRFPFTRIRGPRTPVPHCPPRIGNLWYDANPEGVIMEDVRQSPATLPDGRPGFFVTGQGYRGKVMLPDGLFIHDVGVYGGYLDPQERPSQLELQHLFGGIEFVPGKTGTQEDLFLTELGENVWVKGIVGNAVDELHVESYKNSVRLPSARTDKVLIGARSMSETKLLPYFESADPSGLRGYGLCGFVDGLPPAIGAEVWEHVHRVGLGSNFIPSPELGGHIGLIHVVLERNNPAYPETHDPAYPDIEEQYEGWVVWLDFDENGAPHVKACLRAITPDDVPRCYQGAGELFDTKRVAFPISLYRVGESLRVGYGWGDRALFQAEFDYQTVVRRLAA
Ga0247050_1007057Ga0247050_10070575F079909RERFPEAARREPSQALYSLAQAFARHDDATEAAVDLLVRECVLPEIEEQLQRTLTYPPLLVLLKTLRETDPQRSVDARRLSAQVLGELSGKRLWAVRKRLVASATRAVLGARPIFDELERGGMKVDRTRAARGFARRLEEAVSELAGTRVLPANLLARLAGAEEEPSQAVPAVAIALPADAPP
Ga0247050_1007435Ga0247050_10074351F007576MGDNPEDRVAEFESIWYEVVEAVNAGRTSGLVCPECQHPDGLQVEESQGRVSVSCPNCKRLVEVGIATA
Ga0247050_1011461Ga0247050_10114615F070459MAASSPPGTPAEPELLSVVQGGIAIIGTQYLAGLREAEARQMLDAAEHEFQSLPPPEAQARQAACQQEGTALYRHASSFERMLITRAAERRIRRLRGG
Ga0247050_1017095Ga0247050_10170953F044449MAEIGEPERVVRRERENEPVITPAQPVTTPELEPAH
Ga0247050_1019923Ga0247050_10199231F004608ARRHCRFPTTDGPTPMHPTFDQTRPQPSRWDQHGAEYVRSNIDWCARCSRRLVALNPGLMVEQALDLSQELSLDDNLRSKSPELVAEDLHRVDLQTED
Ga0247050_1025848Ga0247050_10258481F045483AGLVYPGSAGVHTNDYGGSPGNYIGKGAVAATGKSATTVHTQLEVLAYFSQTLAADGWTQTAADDTATTPEGFRAKDISWVKNSLHLSYLVEVWTVGETTQYLTQLNANE
Ga0247050_1033315Ga0247050_10333151F050165MNQTFERALWASTPALRCLAPLDAILAPALALYWIKTLPASGGLVGAVLGVFCLWIGAKRAYRALFEFEAYRWMTLRLAKLAIATWVVMAMVKLVWFIQGS
Ga0247050_1038783Ga0247050_10387832F083559EEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNASEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN
Ga0247050_1046229Ga0247050_10462292F074174MIDLSERTRRISGSRLLDILQQYDAKSVIDPFMGYPTHLNFLKRHGISVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDMFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYQDDMADIPPSELAWHYIRETERLVTQNALRNTVRRGDFNATLAATTADAVFIAPPGRNAHKKADARIWMWEAWWQGDPYLDIERYYRDTIFVQRTNEDSSYDRALGAVFAAAESAPLIILQTTLQNAAHFKALMHDFRPHIEIISPHADETYVVGRR
Ga0247050_1047724Ga0247050_10477241F017369ALKFRLSMPLFDKPFPCPAVSTGSGAVCDAQMDVFGDHALCCHNTSSLGFRHNNIRDILGHSARAAGLAAVAIEKKNQIDGSNARPGDITVQQYHRGFASTAFDITITHPLQKKFIEIAMEEAGVVAQEAHDRKLKKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL
Ga0247050_1050302Ga0247050_10503023F100817MDEVVWLASAHMIATLPSQQRIDEIATELAPDVVRIRSNVAPDWSEHPAIYIRVLLADDASLGDRLADVTGRIGTKLFEELGLASLDHIPYFRFRSQSEQARLKDAA
Ga0247050_1071302Ga0247050_10713021F043059CANVIQPAEPIGPNNPAALAAIRAAYIKAGEQKYFRARMTSESAGKISESTVEFAAPASMHMVMKTDNVEQIVINGTHYLKTDGKWMRLPISSGNLIEQMRKDPAAIAAFEKTISGAQIIGPEPVNNKPAMAYRYYQAATVGGGLASSAGWVKFWVGANGLPLKLESDTVGRVLGFSSQSKSTIYYTDYGVSVRVVAPI
Ga0247050_1078303Ga0247050_10783031F056237MAHNDRALCRCSIRIPSARNRCPAFAKDKYLESMIGDVGQARTKAAMLLLPIATTSSRTCTKPTVVCCFICV
Ga0247050_1079479Ga0247050_10794792F063103MRWFFGTFAVVTAVLFLSFVAWIATRVMHADAANYVVGQIMIYDLCAIAVILAYSGFVGAWHLWEKLTGRMEAERDETGPNS
Ga0247050_1094285Ga0247050_10942851F016828YKREMEKTAEQTYTDLLRQLASPSATLPQVLADTFRDIERMHSMGHITDWQLKNAREAYAATIEREPRQGAPRSPETRADERG
Ga0247050_1096526Ga0247050_10965261F045483MANPRRLFSGLSVLGLSLFVLTGCVVPGGYDVNSLHLLPEAALVYPGSTDVHTNDYGGSPGNYVSKGAVAVTGKSAITTHTQLEVLAYFSRTLAADGWKQTQENVRAATPEGLPAHWVAWDKPKLHLSYFVEVWTVGEATKYYTQFGSNE
Ga0247050_1102415Ga0247050_11024151F045483RLFSGLSVLGLSLLLLTGCVVPGGYDVNSLHLLPESALVYPGSTGVHVNNYGGSPGNYVSKGAVAVTGKSATTVHTQQEVLAYFSKTLAADGWTKIGEDDRGTTPEGIPSKGIAWVKDSLHLSYLVTVWTVGETTQYLTQLSANE
Ga0247050_1107146Ga0247050_11071462F038474YTECACVVTGAVEGASYCSDICRDRDGQSEEMEVGCECGHPPCDTD
Ga0247050_1137185Ga0247050_11371851F046195MKVSRRWIEWAHGPGAEDGQPLATSLCELASAPGSGSILVGDHALIAELVDVAELYVNPCRGDALHEMGPWWMGQPRRIIFEGRASLRAASSAAKSPTVDGQPE

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