Basic Information | |
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IMG/M Taxon OID | 3300029899 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133355 | Gp0289632 | Ga0247047 |
Sample Name | Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2a |
Sequencing Status | Permanent Draft |
Sequencing Center | DMAC, Technical University of Denmark |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 255335083 |
Sequencing Scaffolds | 15 |
Novel Protein Genes | 15 |
Associated Families | 9 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Mycetocola → Mycetocola zhujimingii | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → unclassified Sphingosinicellaceae → Sphingosinicellaceae bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Cryconite Microbial Communities Around The Greenland Ice Sheet |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | aquatic biome → cryoconite hole → cryoconite deposit |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | Greenland: Tasiilaq | |||||||
Coordinates | Lat. (o) | 65.41 | Long. (o) | -38.51 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012906 | Metagenome / Metatranscriptome | 276 | Y |
F014178 | Metagenome / Metatranscriptome | 265 | Y |
F045048 | Metagenome / Metatranscriptome | 153 | Y |
F045483 | Metagenome | 152 | N |
F069295 | Metagenome | 124 | Y |
F069623 | Metagenome / Metatranscriptome | 123 | Y |
F083559 | Metagenome | 112 | Y |
F085031 | Metagenome | 111 | Y |
F086028 | Metagenome / Metatranscriptome | 111 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0247047_1004353 | All Organisms → cellular organisms → Bacteria | 6267 | Open in IMG/M |
Ga0247047_1006031 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus | 5157 | Open in IMG/M |
Ga0247047_1010161 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia | 3671 | Open in IMG/M |
Ga0247047_1010358 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis | 3629 | Open in IMG/M |
Ga0247047_1014387 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2865 | Open in IMG/M |
Ga0247047_1018962 | Not Available | 2302 | Open in IMG/M |
Ga0247047_1025856 | Not Available | 1783 | Open in IMG/M |
Ga0247047_1031372 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1525 | Open in IMG/M |
Ga0247047_1035576 | Not Available | 1364 | Open in IMG/M |
Ga0247047_1038039 | Not Available | 1289 | Open in IMG/M |
Ga0247047_1039715 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1243 | Open in IMG/M |
Ga0247047_1049537 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Mycetocola → Mycetocola zhujimingii | 1028 | Open in IMG/M |
Ga0247047_1077927 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis | 700 | Open in IMG/M |
Ga0247047_1091684 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis | 615 | Open in IMG/M |
Ga0247047_1096466 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → unclassified Sphingosinicellaceae → Sphingosinicellaceae bacterium | 590 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0247047_1004353 | Ga0247047_10043532 | F083559 | MAIIPHTVREFGVEARKEGRAWEAAFNGPIQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARSGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPKQLELQHLFGGIEFGAMTDDRLLTELGDGVWVRGIAESAEGSPHVESYKNSVRLPSVDSHRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECTELGGYIGLIHVVLEKNNPEFPETLDPVHPGIDEQYEGWVVWLTLDEDGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRIGNALQVGYGWGDRALFQAEFEYGVVIDQLFRRSLR |
Ga0247047_1006031 | Ga0247047_10060312 | F012906 | MNIEIHKPDLAHRVRAQMQSDHFKDADELIEKALDALDEQASLTVPEAATGAVVLAALQASPYRDIDLTPPRVRLANARDVVL |
Ga0247047_1010161 | Ga0247047_10101612 | F083559 | MNSVVQPEIMLEPHGSHKMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADPLTGQMLYGVTVRLSRLKDPVSRELYSTNLLFYMSETEMCGMHNVYEMARRFPFTRIRGPRTILPHCPQRVGRLWYDANPEGVIMEDLRLTPATLPDGRSGFFVTGQGYRGKVMFPDGRFVHDVGVYGGYLDPQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNVAEEMRVESYKNSVKLPCLDGRKTLIGARSMSETKQITYFESLSADGLSGFRMGGVIDGLNRALGLEIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPAFPETLDAVHPGINEQYEGWVVWLKFDADGKPVIKACVRAITPDDVPVGYEGAGELFDTKRVAFPMSLYRIGESLSVGYGWGDRALFQADFDYATVMARLSSHGQN |
Ga0247047_1010358 | Ga0247047_10103586 | F083559 | VRLSRMKDTLTRELYSTNILFYLAEKDMAGMHNIYDMAKTLPFTRIRGPRTPVPHCPPRPGRLWYDANPEGVIMEDVRLAPATLPDGRAGFFATGQGYRGKVMLPDGLFVHDVGVYGGYLDPEARPSQLELTHLFGGIEFGAEKTGGQEDLFLTELGENIWVKGIIGSVTEELHVESYKNSVRLPSPLPERTLIGARSMSETKLLPYFGTSDPASLRGYSLRGFIDGLPGAIGSEVWERVVRVGLGSNFIACPEEGGYLGLIHVVLERNEPAHPETLDPSYPKIEEQYEGWMVRLDFDADDRPLFKSCVRAITPNDVPHCYNGLGELFDTKRVAFPISLYRTGDTLAAAYGWGDRALFQAEFDYRDVVRRLAA |
Ga0247047_1014387 | Ga0247047_10143872 | F083559 | MNNAVQHQEVFEERLESNGSRGMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADAEAGQTLYGVTVRLSRLKDPVSRELYSTNLLFYMPEEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNAAEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN |
Ga0247047_1018962 | Ga0247047_10189624 | F069295 | MALSFLHLAFTRILQLVRLGQRDGDELAIEIVMLCHEVAVLRRQV |
Ga0247047_1025856 | Ga0247047_10258562 | F083559 | AKRVMDVIPHTVREFGVEARKPGKAWEAAFNGPIQSWTDPKTGGLTYGVTVRLSRLKDPVTRELYSTNILFYLPEDQMQGMHNVYEMAQRFPFTRIRGPRTLAPPCPPRVGNLSYDPNPEGVIMEDLRLTPATLPDGRPGFFVTGQGYRGKVVFSDGRVIHDVGVYGGYLDPQEHPGQLELQHLFGGVKFTDPPTGAEEDRLLTEIGDGVWVKGILGMESDAPHVESYKNSVKLPSLDGHKTLIGARSMSETKQIAFFESLSEDGLSGFRLAGVIDGLHRALGIEVWDRVHRVGLGSNFVECSELGGYIGLIHVVLEKNNPDFPETLDPAHPGINEQYEGWVVWLAFDENGAPIIKACVRAITPDDVPLSYEGAGELFDTKRVAFPMSLYRVGECLSVGYGWGDRALFQADFDYQTVTNQLSLHNRN |
Ga0247047_1031372 | Ga0247047_10313721 | F086028 | MSESFDLELAAAQLRADSADVRILVKVLVDQLSDALGPRLQVERSGGRFRKSEKIKAITITMEDDQFDAVVDGSALRCTIGHSSGGIRIRSEKVDMDAWLNRLIAVLKSEADHSQAVRQALENIVIGGNA |
Ga0247047_1035576 | Ga0247047_10355763 | F045048 | GLTACIPLGGHWAPNSTVGDNALWKKAQNIPRKNKASDTINKATPMFIPL |
Ga0247047_1038039 | Ga0247047_10380391 | F083559 | RALCWESESVLNLETTIMNTAAATTEFSSPISEPFYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEEPVTGQSAYAVTVRLSRLKDPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRLGFFVTGQGYRGKVTSPDGRFTHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVSSYKNSVRLPSQDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPMIKACVRAITPDDVPLGYCGAGELFDTKRVAFPMSLYRR |
Ga0247047_1039715 | Ga0247047_10397151 | F014178 | MKDEIYIGGWTLPRLREKSQTERYEVWRRARALHSAEGNHLARAIERLGLPYAEPEALDGEHPLLDRLSEIVASKEARSAAIEATLDGLPAMAGVDVLLHEKLGEDYRLNPAAVPTAQGLVAELMESLGWERSGKKTLPLRCVAREGVFWKRG |
Ga0247047_1049537 | Ga0247047_10495371 | F045483 | VLGLSLLVLTGCVVPGGYDVNTLHVQPEAGLVYPGSTGVHTNDYNGSPGNYVSKGAVAATGKSGTTTHTQLEVLAYFSKTLAADGWKQTQEEVRAITPEGLPAHWIAWDKPKLHLSYLVEVWTVGEATKCYTQFGSNE |
Ga0247047_1077927 | Ga0247047_10779271 | F069623 | MKTTMEMNTKQSVFALQHIDSGEYICLLQEGVDYLACFSDGDSALEFRSLLGLHEHVDLCSTTMDRSPFSHFWLDGESVNLLHVPEL |
Ga0247047_1091684 | Ga0247047_10916841 | F069623 | MESALEATRDVDTTQRVFALQHLDTGEYICLMQEGTDYLACFSDGDSALEFRALLGLQEHVDLRSTTLDGSPFRHFWLDGENIALRQEAVH |
Ga0247047_1096466 | Ga0247047_10964661 | F085031 | MSESEKPVREQMTDAMATIRKQLDLLHAGPSIGGPFDDRSVIADLEAEFQALKEGRDNLGSAGRE |
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