NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029899

3300029899: Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2a



Overview

Basic Information
IMG/M Taxon OID3300029899 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133355 | Gp0289632 | Ga0247047
Sample NameCryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2a
Sequencing StatusPermanent Draft
Sequencing CenterDMAC, Technical University of Denmark
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size255335083
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Mycetocola → Mycetocola zhujimingii1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → unclassified Sphingosinicellaceae → Sphingosinicellaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCryconite Microbial Communities Around The Greenland Ice Sheet
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomecryoconite holecryoconite deposit
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationGreenland: Tasiilaq
CoordinatesLat. (o)65.41Long. (o)-38.51Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012906Metagenome / Metatranscriptome276Y
F014178Metagenome / Metatranscriptome265Y
F045048Metagenome / Metatranscriptome153Y
F045483Metagenome152N
F069295Metagenome124Y
F069623Metagenome / Metatranscriptome123Y
F083559Metagenome112Y
F085031Metagenome111Y
F086028Metagenome / Metatranscriptome111Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247047_1004353All Organisms → cellular organisms → Bacteria6267Open in IMG/M
Ga0247047_1006031All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus5157Open in IMG/M
Ga0247047_1010161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia3671Open in IMG/M
Ga0247047_1010358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis3629Open in IMG/M
Ga0247047_1014387All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2865Open in IMG/M
Ga0247047_1018962Not Available2302Open in IMG/M
Ga0247047_1025856Not Available1783Open in IMG/M
Ga0247047_1031372All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1525Open in IMG/M
Ga0247047_1035576Not Available1364Open in IMG/M
Ga0247047_1038039Not Available1289Open in IMG/M
Ga0247047_1039715All Organisms → cellular organisms → Bacteria → Proteobacteria1243Open in IMG/M
Ga0247047_1049537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Mycetocola → Mycetocola zhujimingii1028Open in IMG/M
Ga0247047_1077927All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis700Open in IMG/M
Ga0247047_1091684All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis615Open in IMG/M
Ga0247047_1096466All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → unclassified Sphingosinicellaceae → Sphingosinicellaceae bacterium590Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247047_1004353Ga0247047_10043532F083559MAIIPHTVREFGVEARKEGRAWEAAFNGPIQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARSGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPKQLELQHLFGGIEFGAMTDDRLLTELGDGVWVRGIAESAEGSPHVESYKNSVRLPSVDSHRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECTELGGYIGLIHVVLEKNNPEFPETLDPVHPGIDEQYEGWVVWLTLDEDGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRIGNALQVGYGWGDRALFQAEFEYGVVIDQLFRRSLR
Ga0247047_1006031Ga0247047_10060312F012906MNIEIHKPDLAHRVRAQMQSDHFKDADELIEKALDALDEQASLTVPEAATGAVVLAALQASPYRDIDLTPPRVRLANARDVVL
Ga0247047_1010161Ga0247047_10101612F083559MNSVVQPEIMLEPHGSHKMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADPLTGQMLYGVTVRLSRLKDPVSRELYSTNLLFYMSETEMCGMHNVYEMARRFPFTRIRGPRTILPHCPQRVGRLWYDANPEGVIMEDLRLTPATLPDGRSGFFVTGQGYRGKVMFPDGRFVHDVGVYGGYLDPQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNVAEEMRVESYKNSVKLPCLDGRKTLIGARSMSETKQITYFESLSADGLSGFRMGGVIDGLNRALGLEIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPAFPETLDAVHPGINEQYEGWVVWLKFDADGKPVIKACVRAITPDDVPVGYEGAGELFDTKRVAFPMSLYRIGESLSVGYGWGDRALFQADFDYATVMARLSSHGQN
Ga0247047_1010358Ga0247047_10103586F083559VRLSRMKDTLTRELYSTNILFYLAEKDMAGMHNIYDMAKTLPFTRIRGPRTPVPHCPPRPGRLWYDANPEGVIMEDVRLAPATLPDGRAGFFATGQGYRGKVMLPDGLFVHDVGVYGGYLDPEARPSQLELTHLFGGIEFGAEKTGGQEDLFLTELGENIWVKGIIGSVTEELHVESYKNSVRLPSPLPERTLIGARSMSETKLLPYFGTSDPASLRGYSLRGFIDGLPGAIGSEVWERVVRVGLGSNFIACPEEGGYLGLIHVVLERNEPAHPETLDPSYPKIEEQYEGWMVRLDFDADDRPLFKSCVRAITPNDVPHCYNGLGELFDTKRVAFPISLYRTGDTLAAAYGWGDRALFQAEFDYRDVVRRLAA
Ga0247047_1014387Ga0247047_10143872F083559MNNAVQHQEVFEERLESNGSRGMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADAEAGQTLYGVTVRLSRLKDPVSRELYSTNLLFYMPEEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNAAEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN
Ga0247047_1018962Ga0247047_10189624F069295MALSFLHLAFTRILQLVRLGQRDGDELAIEIVMLCHEVAVLRRQV
Ga0247047_1025856Ga0247047_10258562F083559AKRVMDVIPHTVREFGVEARKPGKAWEAAFNGPIQSWTDPKTGGLTYGVTVRLSRLKDPVTRELYSTNILFYLPEDQMQGMHNVYEMAQRFPFTRIRGPRTLAPPCPPRVGNLSYDPNPEGVIMEDLRLTPATLPDGRPGFFVTGQGYRGKVVFSDGRVIHDVGVYGGYLDPQEHPGQLELQHLFGGVKFTDPPTGAEEDRLLTEIGDGVWVKGILGMESDAPHVESYKNSVKLPSLDGHKTLIGARSMSETKQIAFFESLSEDGLSGFRLAGVIDGLHRALGIEVWDRVHRVGLGSNFVECSELGGYIGLIHVVLEKNNPDFPETLDPAHPGINEQYEGWVVWLAFDENGAPIIKACVRAITPDDVPLSYEGAGELFDTKRVAFPMSLYRVGECLSVGYGWGDRALFQADFDYQTVTNQLSLHNRN
Ga0247047_1031372Ga0247047_10313721F086028MSESFDLELAAAQLRADSADVRILVKVLVDQLSDALGPRLQVERSGGRFRKSEKIKAITITMEDDQFDAVVDGSALRCTIGHSSGGIRIRSEKVDMDAWLNRLIAVLKSEADHSQAVRQALENIVIGGNA
Ga0247047_1035576Ga0247047_10355763F045048GLTACIPLGGHWAPNSTVGDNALWKKAQNIPRKNKASDTINKATPMFIPL
Ga0247047_1038039Ga0247047_10380391F083559RALCWESESVLNLETTIMNTAAATTEFSSPISEPFYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEEPVTGQSAYAVTVRLSRLKDPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRLGFFVTGQGYRGKVTSPDGRFTHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVSSYKNSVRLPSQDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPMIKACVRAITPDDVPLGYCGAGELFDTKRVAFPMSLYRR
Ga0247047_1039715Ga0247047_10397151F014178MKDEIYIGGWTLPRLREKSQTERYEVWRRARALHSAEGNHLARAIERLGLPYAEPEALDGEHPLLDRLSEIVASKEARSAAIEATLDGLPAMAGVDVLLHEKLGEDYRLNPAAVPTAQGLVAELMESLGWERSGKKTLPLRCVAREGVFWKRG
Ga0247047_1049537Ga0247047_10495371F045483VLGLSLLVLTGCVVPGGYDVNTLHVQPEAGLVYPGSTGVHTNDYNGSPGNYVSKGAVAATGKSGTTTHTQLEVLAYFSKTLAADGWKQTQEEVRAITPEGLPAHWIAWDKPKLHLSYLVEVWTVGEATKCYTQFGSNE
Ga0247047_1077927Ga0247047_10779271F069623MKTTMEMNTKQSVFALQHIDSGEYICLLQEGVDYLACFSDGDSALEFRSLLGLHEHVDLCSTTMDRSPFSHFWLDGESVNLLHVPEL
Ga0247047_1091684Ga0247047_10916841F069623MESALEATRDVDTTQRVFALQHLDTGEYICLMQEGTDYLACFSDGDSALEFRALLGLQEHVDLRSTTLDGSPFRHFWLDGENIALRQEAVH
Ga0247047_1096466Ga0247047_10964661F085031MSESEKPVREQMTDAMATIRKQLDLLHAGPSIGGPFDDRSVIADLEAEFQALKEGRDNLGSAGRE

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