| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029838 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321335 | Ga0307348 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 42987975 |
| Sequencing Scaffolds | 18 |
| Novel Protein Genes | 21 |
| Associated Families | 16 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 5 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 2 |
| Not Available | 7 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012026 | Metagenome / Metatranscriptome | 284 | Y |
| F015738 | Metagenome / Metatranscriptome | 252 | Y |
| F022205 | Metatranscriptome | 215 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F029922 | Metagenome / Metatranscriptome | 187 | Y |
| F030486 | Metagenome / Metatranscriptome | 185 | Y |
| F035532 | Metagenome / Metatranscriptome | 172 | N |
| F037746 | Metagenome / Metatranscriptome | 167 | N |
| F053881 | Metagenome / Metatranscriptome | 140 | N |
| F054063 | Metagenome / Metatranscriptome | 140 | N |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F070633 | Metagenome / Metatranscriptome | 123 | N |
| F082734 | Metagenome / Metatranscriptome | 113 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F095527 | Metagenome / Metatranscriptome | 105 | N |
| F098758 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307348_104014 | All Organisms → cellular organisms → Bacteria | 1581 | Open in IMG/M |
| Ga0307348_105024 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 1407 | Open in IMG/M |
| Ga0307348_105078 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 1399 | Open in IMG/M |
| Ga0307348_105160 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 1387 | Open in IMG/M |
| Ga0307348_105329 | Not Available | 1364 | Open in IMG/M |
| Ga0307348_107775 | All Organisms → Viruses → Predicted Viral | 1108 | Open in IMG/M |
| Ga0307348_109318 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 993 | Open in IMG/M |
| Ga0307348_110202 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 938 | Open in IMG/M |
| Ga0307348_113854 | Not Available | 775 | Open in IMG/M |
| Ga0307348_114257 | Not Available | 761 | Open in IMG/M |
| Ga0307348_116591 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 691 | Open in IMG/M |
| Ga0307348_117021 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 680 | Open in IMG/M |
| Ga0307348_118145 | Not Available | 653 | Open in IMG/M |
| Ga0307348_120197 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 611 | Open in IMG/M |
| Ga0307348_120628 | Not Available | 602 | Open in IMG/M |
| Ga0307348_121175 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 593 | Open in IMG/M |
| Ga0307348_122519 | Not Available | 569 | Open in IMG/M |
| Ga0307348_127162 | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307348_101535 | Ga0307348_1015351 | F035532 | NIERIFAAYNGLTVVKTWSRPTKLTTAVESPEVNIDLIAASVDSVSLSQPHKKTSFYVRFTIFEEQTTSTSQMDTIYQGIIGAVAANPTLKDSNNAATCDYFGTFNGREISWDLAATERNGISVNAMKIDVPCEVRDT |
| Ga0307348_101823 | Ga0307348_1018232 | F035532 | MTFGPIAFLANIERIFAAYNGLTVVKTWSRPTKLTTSVASPEINIDYVVASVDSVSLSQPHKKISFYVRFTIFEEQTTSSSQMDTLYQGILGAVAANPTLEDINKVATCDYFGTFNGREISWDFVATERNGISVNAMKIDVPCEVRDT |
| Ga0307348_104014 | Ga0307348_1040141 | F030486 | RYVALAQSRGGACFCTRGAMQGYAVITLLSRWQKP |
| Ga0307348_105024 | Ga0307348_1050241 | F054063 | IMNAWLYGVESTSNLFFERPKLFYRKWGTLAIHPFIESWGELGMEFQKGLSPYNTVKMFIDALVAAHFFNPDDFEFGGDDNNFTFKAIKCPYKSHCKKLVDSKNEIACLRAITLLGSLDYNVEGESLKYKYNFDFNENAPCNVVFERFKD |
| Ga0307348_105078 | Ga0307348_1050782 | F037746 | MLKKLSPWARWRKKMTIDIEKAKAEDIVGQEFDANYIAGTTDKDMEEARAVMSKLLKKYGSRQALEADQIDWEKYQKAMYVVASRSKDAMIAATKAREDHIKRKNLLSEFFEENPKVLFGLSEWQRINIRKYTDFGLLVGQELLWDLLKEEGEEGTIAHLANVANYIYNDTGFMGGVREDYSALLKGPIRSIYYRPSCKTHETVKPDCGCECED |
| Ga0307348_105160 | Ga0307348_1051601 | F053881 | LGEKERKLYSKLYRHIIESFEIDEIAADQISLALVCQRCILLPRLLSGEDVDINQVSESIREWLSEYRLTPKSREKEKEVTINLSAIIEEIHRERENPN |
| Ga0307348_105160 | Ga0307348_1051602 | F070633 | LGGRDTGLRDRAKNRLVLDVSHSQGDEGFIYSVRQHLPLGPKKCTGGFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKIQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG |
| Ga0307348_105329 | Ga0307348_1053292 | F082734 | SHRHLFGGQTITWQAFDEEEAKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSDRLKLTQKEEKDAQTN |
| Ga0307348_107775 | Ga0307348_1077752 | F012026 | MNLKEVQAQTAALIGKRAEAINILHRLEKVEDRYNPKIIAEINGYKQAIEELSKELNRLEVEKGALLEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAARRAREILMTKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD |
| Ga0307348_109318 | Ga0307348_1093182 | F095527 | GILSEDYNTATTSAISYLEGIDPENPYLLLAKDTTITNPKMSINFALKGIIESEKGNKEDNLNKALEIMNSLKLIPEERKDMFNVLILEYNLTRSQKYIEDSAKTSNLRYLANSEEYLKQANEDLNEINGNGLEETETKLKKIAETYLNQSSNYSNLYKEMALMSYGENRYLATTLFSIYAKNDKQSFDEPLDVILTRFGNVWNSFFGSGTYKDSPFSPDSLKELQRKAINYRGEGNEDFANVISDYIKFQAISYTEFINAIEEGGL |
| Ga0307348_110202 | Ga0307348_1102021 | F094051 | MANTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMR |
| Ga0307348_113854 | Ga0307348_1138541 | F025291 | NKQPNQRRGGYRPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307348_114257 | Ga0307348_1142571 | F025291 | NGKNKHYMVNLNRQINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK |
| Ga0307348_116591 | Ga0307348_1165911 | F054063 | FSKVNLMDINVKLKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTIAIGPFIESWKDLDMEFQKGLSPYNTAKMFIEALVKAEFFNSADFEMAGDDNNFTFKAINCPYKSHCSRLIDEGKEIACLRAITFLGAMEFNKEGESLKYMYKFEFNKETPCLVSFEKFKD |
| Ga0307348_117021 | Ga0307348_1170212 | F015738 | MPEIERPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPPSGLEGCAWCLHFDRPIDHRLVKEDRPACIEERNGCGNCPESTYRVRRGPDR |
| Ga0307348_118145 | Ga0307348_1181451 | F059033 | MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVIAQKGAPTAYRSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDT |
| Ga0307348_120197 | Ga0307348_1201971 | F098758 | TAIFTVITLIWILILSSGCNKPNEEKPPVINKDLCDNIECPNVCKGEDLWSQKCLDGNCVDFVRVESCSEKCGCIVDLCQRIKCSDQCRNEDLWTYKCVDGLCTPDTIKEKCSIQCGCAPKFFYKLNPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEPMKGYE |
| Ga0307348_120628 | Ga0307348_1206281 | F022205 | NLRTMRNRNKRFLLPYNKFHNATDQTSSITTNVFGFPLSRPLRPHAVEVRYAHSAPIGVRFRIYAGNGEEVYVSPALVAGPAPQVFKASLPANTDFAMYGPSQIVMDFAGTATWAIRLIMAHKENTA |
| Ga0307348_121175 | Ga0307348_1211751 | F098758 | CNKPNEEKPPVINKDLCDNIECPNVCKGEDLWSQKCLEGNCVDFVRIESCSEKCGCIVDLCQRVKCNDQCRNEDLWTYKCVDGLCIPDTIKEKCSVQCGCAPKFFYKLNPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEPMKGYELKIDKSGTYMIG |
| Ga0307348_122519 | Ga0307348_1225191 | F029922 | LAKSVDVFEKRHMDVLPMLSREELYSLHIFDLSEMIISIEHAIRYTEGYRFLLLCFGNEGSSDKAKTIMKGLEDYLQIVKDVYRFKVNEKKRKENFFMGEIC |
| Ga0307348_127162 | Ga0307348_1271621 | F029922 | MDVLPMLSREELYSLHIFDLSEMIISIEHAIRYTEGYRFLLLCFGSDGSSDKAKAVIKGMEDYLGLVKDVYRFKVNEKKRKMAFLKGDIY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |